Wall clock time and date at job start Tue Mar 31 2020 07:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09007 * 109.46903 * 2 1 4 4 C 1.52995 * 109.47257 * 120.00087 * 2 1 3 5 5 C 1.50703 * 109.47130 * 294.99919 * 4 2 1 6 6 H 1.07999 * 120.00271 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00252 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00358 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99751 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47285 * 90.00237 * 9 7 5 11 11 H 1.48503 * 109.47054 * 210.00182 * 9 7 5 12 12 H 1.48497 * 109.47026 * 330.00019 * 9 7 5 13 13 C 1.53000 * 109.46951 * 240.00355 * 2 1 3 14 14 N 1.46497 * 109.47391 * 64.99847 * 13 2 1 15 15 C 1.39927 * 120.00130 * 180.02562 * 14 13 2 16 16 C 1.38866 * 120.01965 * 359.97438 * 15 14 13 17 17 C 1.38130 * 119.94756 * 179.88064 * 16 15 14 18 18 C 1.38766 * 120.30695 * 0.04125 * 17 16 15 19 19 C 1.38974 * 119.98756 * 0.13061 * 18 17 16 20 20 C 1.38637 * 120.02272 * 179.97438 * 15 14 13 21 21 N 1.39848 * 121.87312 * 179.69501 * 19 18 17 22 22 C 1.46894 * 111.00075 * 144.72713 * 21 19 18 23 23 C 1.46754 * 112.14567 * 19.93408 * 21 19 18 24 24 C 1.53428 * 108.58955 * 309.74144 * 23 21 19 25 25 O 1.36275 * 118.66378 * 180.17810 * 18 17 16 26 26 H 1.09004 * 109.46591 * 299.99906 * 1 2 3 27 27 H 1.08997 * 109.47207 * 59.99726 * 1 2 3 28 28 H 1.08994 * 109.46576 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47600 * 55.00010 * 4 2 1 30 30 H 1.09001 * 109.47318 * 175.00408 * 4 2 1 31 31 H 0.97001 * 120.00217 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.46890 * 304.99563 * 13 2 1 33 33 H 1.08999 * 109.46746 * 185.00080 * 13 2 1 34 34 H 0.96995 * 119.99944 * 359.97438 * 14 13 2 35 35 H 1.08003 * 120.02339 * 359.86707 * 16 15 14 36 36 H 1.08006 * 119.84281 * 180.02562 * 17 16 15 37 37 H 1.08001 * 119.90523 * 0.02562 * 20 15 14 38 38 H 1.09002 * 109.47400 * 301.80816 * 22 21 19 39 39 H 1.09009 * 109.46762 * 61.80644 * 22 21 19 40 40 H 1.09005 * 109.47534 * 181.80612 * 22 21 19 41 41 H 1.09004 * 109.61777 * 69.47544 * 23 21 19 42 42 H 1.09000 * 109.61801 * 190.00938 * 23 21 19 43 43 H 1.09000 * 109.77487 * 182.90622 * 24 23 21 44 44 H 1.08992 * 109.77844 * 303.71307 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6414 0.0571 2.4766 6 1 1.0808 0.9746 2.3757 7 6 1.9934 -0.4016 3.7282 8 7 1.6450 0.2773 4.7994 9 14 2.9637 -1.9883 3.9027 10 1 4.4172 -1.6849 3.8779 11 1 2.6164 -2.6419 5.1901 12 1 2.6289 -2.8994 2.7789 13 6 2.0400 -0.7212 -1.2493 14 7 1.6524 0.0354 -2.4424 15 6 2.0086 -0.4307 -3.7128 16 6 2.7300 -1.6101 -3.8430 17 6 3.0787 -2.0701 -5.0979 18 6 2.7122 -1.3584 -6.2314 19 6 1.9934 -0.1756 -6.1067 20 6 1.6416 0.2847 -4.8422 21 7 1.6092 0.5761 -7.2217 22 6 0.2961 1.1994 -7.0093 23 6 1.6207 -0.2187 -8.4553 24 6 2.9700 -0.9417 -8.5588 25 8 3.0707 -1.8448 -7.4529 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3632 -1.0276 0.0005 29 1 1.6055 -1.7198 1.2952 30 1 3.1264 -0.7994 1.2056 31 1 1.8923 -0.0457 5.6800 32 1 1.6054 -1.7198 -1.2952 33 1 3.1263 -0.7994 -1.2056 34 1 1.1483 0.8591 -2.3518 35 1 3.0183 -2.1671 -2.9638 36 1 3.6394 -2.9878 -5.1973 37 1 1.0810 1.2021 -4.7399 38 1 -0.4443 0.4261 -6.8046 39 1 0.3513 1.8831 -6.1621 40 1 0.0070 1.7516 -7.9036 41 1 0.8141 -0.9513 -8.4262 42 1 1.4907 0.4385 -9.3152 43 1 3.0195 -1.4978 -9.4950 44 1 3.7817 -0.2155 -8.5171 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877159193.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:26 Heat of formation + Delta-G solvation = -28.563354 kcal Electronic energy + Delta-G solvation = -22739.270126 eV Core-core repulsion = 19462.594227 eV Total energy + Delta-G solvation = -3276.675899 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.89129 -39.43024 -37.82264 -37.40806 -35.19022 -33.87183 -31.59922 -30.75124 -29.75161 -28.92106 -27.14619 -26.01696 -24.99166 -23.83207 -23.05031 -20.91931 -20.71348 -19.12694 -18.92952 -18.04011 -17.80547 -16.72614 -16.46501 -15.96585 -15.89253 -15.66100 -15.47793 -15.22313 -14.97278 -14.92789 -14.40311 -14.19528 -14.10553 -13.90003 -13.56146 -13.30974 -13.07941 -12.86916 -12.74071 -12.60543 -12.43756 -12.12474 -12.05617 -11.80222 -11.57683 -11.51731 -11.35429 -11.09520 -10.96441 -10.72972 -10.25225 -8.93205 -8.25642 -7.95888 -6.28213 0.40800 0.68519 1.38083 1.39566 1.50883 2.38579 2.40018 2.47310 2.79275 3.00320 3.10175 3.65179 3.77788 4.02921 4.09912 4.13247 4.17582 4.28022 4.31648 4.40270 4.47553 4.51364 4.53353 4.70385 4.74377 4.75469 4.77733 4.88647 4.92117 4.94600 5.03446 5.08335 5.20344 5.26197 5.35929 5.45675 5.49174 5.54203 5.66853 5.70930 5.91956 6.04014 6.31017 6.40205 6.61093 6.79547 6.91952 7.35595 8.90884 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.033481 B = 0.002865 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.092006 B = 9772.454540 C =10458.988543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.080 4.080 3 H 0.058 0.942 4 C -0.006 4.006 5 C -0.518 4.518 6 H 0.036 0.964 7 C 0.001 3.999 8 N -0.954 5.954 9 Si 0.946 3.054 10 H -0.269 1.269 11 H -0.288 1.288 12 H -0.244 1.244 13 C 0.140 3.860 14 N -0.739 5.739 15 C 0.212 3.788 16 C -0.201 4.201 17 C -0.080 4.080 18 C 0.004 3.996 19 C 0.085 3.915 20 C -0.213 4.213 21 N -0.502 5.502 22 C 0.025 3.975 23 C 0.014 3.986 24 C 0.053 3.947 25 O -0.335 6.335 26 H 0.037 0.963 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.023 0.977 30 H 0.019 0.981 31 H 0.264 0.736 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.402 0.598 35 H 0.131 0.869 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.036 0.964 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.053 0.947 42 H 0.126 0.874 43 H 0.141 0.859 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.242 -2.548 -29.797 29.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.099 4.099 3 H 0.077 0.923 4 C -0.044 4.044 5 C -0.556 4.556 6 H 0.055 0.945 7 C -0.195 4.195 8 N -0.595 5.595 9 Si 0.770 3.230 10 H -0.194 1.194 11 H -0.214 1.214 12 H -0.167 1.167 13 C 0.015 3.985 14 N -0.369 5.369 15 C 0.107 3.893 16 C -0.225 4.225 17 C -0.100 4.100 18 C -0.044 4.044 19 C -0.014 4.014 20 C -0.239 4.239 21 N -0.218 5.218 22 C -0.120 4.120 23 C -0.112 4.112 24 C -0.022 4.022 25 O -0.251 6.251 26 H 0.056 0.944 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.041 0.959 30 H 0.037 0.963 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.238 0.762 35 H 0.149 0.851 36 H 0.157 0.843 37 H 0.155 0.845 38 H 0.055 0.945 39 H 0.098 0.902 40 H 0.116 0.884 41 H 0.072 0.928 42 H 0.144 0.856 43 H 0.158 0.842 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.192 -2.449 -29.653 29.755 hybrid contribution -0.367 -0.284 1.043 1.141 sum -0.175 -2.733 -28.610 28.741 Atomic orbital electron populations 1.21640 0.94883 1.01310 1.00573 1.21063 0.96439 0.99203 0.93203 0.92307 1.19527 0.96115 0.96015 0.92719 1.21429 1.34408 1.08665 0.91142 0.94525 1.25985 0.97051 1.00866 0.95579 1.70066 1.49106 1.41620 0.98737 0.85722 0.79178 0.80049 0.78089 1.19408 1.21432 1.16700 1.21316 0.98895 0.94991 0.83283 1.44722 1.62069 1.28223 1.01885 1.17701 0.93388 0.92866 0.85317 1.20558 1.06204 0.98242 0.97447 1.20353 0.99873 1.00403 0.89375 1.18542 1.04777 0.95098 0.85932 1.18703 0.99199 0.92057 0.91443 1.20331 1.10670 1.03475 0.89406 1.58805 1.29684 1.31542 1.01757 1.22585 0.85904 0.99174 1.04326 1.22940 0.98198 0.97358 0.92699 1.23347 0.96584 0.93079 0.89236 1.86188 1.84339 1.40181 1.14362 0.94426 0.91892 0.93189 0.95909 0.96280 0.92709 0.92118 0.92535 0.76207 0.85068 0.84314 0.84464 0.94539 0.90189 0.88389 0.92830 0.85580 0.84174 0.91398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 8.88 71.98 0.64 -3.71 16 2 C -0.08 -2.88 2.37 -10.79 -0.03 -2.91 16 3 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 4 C -0.01 -0.26 3.52 29.85 0.10 -0.16 16 5 C -0.52 -29.02 8.96 25.60 0.23 -28.79 16 6 H 0.04 2.26 7.30 -2.91 -0.02 2.23 16 7 C 0.00 0.08 5.47 84.65 0.46 0.54 16 8 N -0.95 -59.73 13.96 21.45 0.30 -59.43 16 9 Si 0.95 43.88 27.47 68.60 1.88 45.77 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 12 H -0.24 -10.37 6.54 99.48 0.65 -9.72 16 13 C 0.14 4.10 4.30 86.38 0.37 4.47 16 14 N -0.74 -19.33 5.47 -339.47 -1.86 -21.19 16 15 C 0.21 5.58 6.65 38.09 0.25 5.83 16 16 C -0.20 -5.26 9.31 22.39 0.21 -5.05 16 17 C -0.08 -2.03 9.93 22.37 0.22 -1.81 16 18 C 0.00 0.11 6.47 22.57 0.15 0.26 16 19 C 0.09 2.06 5.82 38.24 0.22 2.28 16 20 C -0.21 -5.18 8.91 22.57 0.20 -4.98 16 21 N -0.50 -9.44 4.89 -719.18 -3.51 -12.95 16 22 C 0.03 0.36 8.89 127.69 1.14 1.49 16 23 C 0.01 0.20 5.71 86.47 0.49 0.69 16 24 C 0.05 0.78 7.26 72.13 0.52 1.30 16 25 O -0.34 -7.80 10.41 -96.70 -1.01 -8.80 16 26 H 0.04 1.51 6.95 -2.39 -0.02 1.49 16 27 H 0.06 1.76 7.18 -2.39 -0.02 1.74 16 28 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.02 1.00 7.20 -2.39 -0.02 0.98 16 30 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 31 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 32 H 0.06 1.74 7.95 -2.39 -0.02 1.72 16 33 H 0.06 1.67 7.95 -2.39 -0.02 1.65 16 34 H 0.40 9.68 7.67 -92.71 -0.71 8.97 16 35 H 0.13 3.26 6.73 -2.91 -0.02 3.24 16 36 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 37 H 0.14 2.88 6.07 -2.91 -0.02 2.87 16 38 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.08 1.13 6.27 -2.38 -0.01 1.11 16 40 H 0.10 0.90 8.11 -2.38 -0.02 0.88 16 41 H 0.05 0.78 8.13 -2.39 -0.02 0.76 16 42 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -68.35 345.69 1.22 -67.13 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.22 Total: 20.00 kcal Atomic # 6 Polarization: -35.73 SS G_CDS: 5.19 Total: -30.54 kcal Atomic # 7 Polarization: -88.49 SS G_CDS: -5.07 Total: -93.56 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: -1.01 Total: -8.80 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.88 Total: 45.77 kcal Total: -68.35 1.22 -67.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877159193.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.570 kcal (2) G-P(sol) polarization free energy of solvation -68.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds