Wall clock time and date at job start Tue Mar 31 2020 07:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46970 * 2 1 4 4 C 1.52997 * 109.47404 * 240.00049 * 2 1 3 5 5 C 1.50701 * 109.47212 * 174.99684 * 4 2 1 6 6 C 1.38674 * 120.41757 * 90.00021 * 5 4 2 7 7 C 1.38621 * 118.42130 * 179.97438 * 6 5 4 8 8 C 1.38227 * 119.16178 * 0.02562 * 7 6 5 9 9 N 1.31855 * 120.76380 * 359.97438 * 8 7 6 10 10 C 1.31884 * 121.72115 * 359.70717 * 9 8 7 11 11 N 1.46504 * 109.47145 * 119.99584 * 2 1 3 12 12 C 1.34776 * 120.00219 * 275.00364 * 11 2 1 13 13 O 1.21274 * 120.00173 * 359.97438 * 12 11 2 14 14 C 1.50705 * 119.99786 * 180.02562 * 12 11 2 15 15 C 1.53004 * 109.46879 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.46987 * 179.97438 * 15 14 12 17 17 C 1.52997 * 109.47111 * 180.02562 * 16 15 14 18 18 C 1.50695 * 109.47310 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99750 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00488 * 180.02562 * 18 17 16 21 21 N 1.31522 * 119.99733 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00397 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47151 * 60.00058 * 22 20 18 24 24 H 1.48505 * 109.46960 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47212 * 299.99783 * 22 20 18 26 26 H 1.09000 * 109.47476 * 60.00038 * 1 2 3 27 27 H 1.09008 * 109.46970 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47654 * 299.99762 * 1 2 3 29 29 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 30 30 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 31 31 H 1.08004 * 120.78805 * 359.97438 * 6 5 4 32 32 H 1.08009 * 120.42155 * 180.02562 * 7 6 5 33 33 H 1.08001 * 119.61799 * 179.97438 * 8 7 6 34 34 H 1.08007 * 119.61602 * 180.31062 * 10 9 8 35 35 H 0.97006 * 119.99491 * 95.00433 * 11 2 1 36 36 H 1.08995 * 109.47237 * 299.99994 * 14 12 11 37 37 H 1.08997 * 109.46884 * 59.99911 * 14 12 11 38 38 H 1.08995 * 109.47352 * 300.00133 * 15 14 12 39 39 H 1.09001 * 109.46997 * 59.99922 * 15 14 12 40 40 H 1.09003 * 109.47081 * 300.00498 * 16 15 14 41 41 H 1.08997 * 109.46804 * 60.00103 * 16 15 14 42 42 H 1.09006 * 109.47129 * 300.00567 * 17 16 15 43 43 H 1.09001 * 109.47116 * 59.99806 * 17 16 15 44 44 H 0.96998 * 120.00136 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3127 6 6 4.3400 -1.5795 -0.7165 7 6 5.7167 -1.4410 -0.8006 8 6 6.2445 -0.3533 -1.4706 9 7 5.4549 0.5450 -2.0258 10 6 4.1412 0.4420 -1.9709 11 7 2.0183 -0.6905 1.1962 12 6 2.1470 -0.0182 2.3572 13 8 1.8589 1.1586 2.4116 14 6 2.6499 -0.7285 3.5875 15 6 2.7018 0.2548 4.7586 16 6 3.2117 -0.4664 6.0079 17 6 3.2630 0.5166 7.1791 18 6 3.7659 -0.1935 8.4094 19 1 4.0228 -1.2414 8.3609 20 6 3.8970 0.4941 9.5972 21 7 3.5837 1.7701 9.6564 22 14 4.5197 -0.3864 11.1224 23 1 5.8813 -0.9201 10.8647 24 1 4.5696 0.5679 12.2592 25 1 3.6038 -1.5067 11.4558 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.6054 -0.2617 -2.1370 30 1 1.7517 -1.7715 -1.2055 31 1 3.8993 -2.4189 -0.1990 32 1 6.3687 -2.1737 -0.3482 33 1 7.3161 -0.2379 -1.5403 34 1 3.5267 1.1950 -2.4420 35 1 2.2490 -1.6317 1.1527 36 1 1.9778 -1.5508 3.8326 37 1 3.6492 -1.1202 3.3979 38 1 3.3741 1.0769 4.5134 39 1 1.7026 0.6470 4.9483 40 1 2.5390 -1.2883 6.2530 41 1 4.2108 -0.8588 5.8184 42 1 3.9355 1.3389 6.9342 43 1 2.2637 0.9088 7.3684 44 1 3.6756 2.2538 10.4922 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889672137.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:17 Heat of formation + Delta-G solvation = -39.798928 kcal Electronic energy + Delta-G solvation = -22159.567806 eV Core-core repulsion = 18882.404696 eV Total energy + Delta-G solvation = -3277.163110 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 9.11 seconds Orbital eigenvalues (eV) -40.66098 -39.67545 -36.64071 -34.83509 -33.21134 -32.64604 -32.27625 -31.00998 -29.40762 -27.16236 -25.66988 -23.91664 -23.17788 -22.35292 -21.10512 -20.29659 -19.94714 -17.43399 -16.96461 -16.75714 -16.24325 -16.03406 -15.76945 -15.43309 -14.49449 -14.39165 -14.20523 -13.95085 -13.79263 -13.41314 -13.30285 -12.96294 -12.62148 -12.59857 -12.34591 -12.14103 -11.66945 -11.64925 -11.56410 -11.35129 -10.95870 -10.52853 -10.51301 -10.39602 -10.09745 -9.79528 -9.73640 -9.60025 -9.34459 -9.20848 -9.11661 -8.97410 -8.29144 -5.93991 -3.96688 0.78370 0.96767 2.75418 3.10067 3.35798 3.40176 3.42354 3.48233 4.09376 4.33142 4.42657 4.49415 4.51170 4.61157 4.67960 4.93214 4.93606 4.98782 5.15600 5.28132 5.33367 5.37472 5.38588 5.41365 5.43454 5.46939 5.70551 5.78600 5.86722 5.93523 5.96692 6.15157 6.31675 6.37699 6.38712 6.56343 6.85411 7.03512 7.21287 7.44099 7.67541 7.75033 7.91547 8.07463 8.29359 8.49083 9.10873 9.66812 11.17341 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.019766 B = 0.002665 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.212383 B =10504.171069 C =11330.451583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.145 3.855 3 H 0.089 0.911 4 C -0.084 4.084 5 C -0.132 4.132 6 C -0.070 4.070 7 C -0.168 4.168 8 C 0.093 3.907 9 N -0.483 5.483 10 C 0.101 3.899 11 N -0.733 5.733 12 C 0.513 3.487 13 O -0.534 6.534 14 C -0.139 4.139 15 C -0.103 4.103 16 C -0.110 4.110 17 C 0.020 3.980 18 C -0.521 4.521 19 H 0.053 0.947 20 C 0.055 3.945 21 N -0.895 5.895 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.131 0.869 32 H 0.136 0.864 33 H 0.155 0.845 34 H 0.153 0.847 35 H 0.396 0.604 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.015 0.985 43 H 0.016 0.984 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.961 -9.546 -26.948 28.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.041 3.959 3 H 0.107 0.893 4 C -0.122 4.122 5 C -0.134 4.134 6 C -0.096 4.096 7 C -0.188 4.188 8 C -0.064 4.064 9 N -0.191 5.191 10 C -0.056 4.056 11 N -0.387 5.387 12 C 0.301 3.699 13 O -0.409 6.409 14 C -0.179 4.179 15 C -0.141 4.141 16 C -0.148 4.148 17 C -0.017 4.017 18 C -0.560 4.560 19 H 0.072 0.928 20 C -0.146 4.146 21 N -0.535 5.535 22 Si 0.719 3.281 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.110 0.890 30 H 0.099 0.901 31 H 0.149 0.851 32 H 0.154 0.846 33 H 0.172 0.828 34 H 0.171 0.829 35 H 0.229 0.771 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.797 -7.797 -27.217 28.369 hybrid contribution 0.134 -1.679 1.361 2.165 sum -1.663 -9.476 -25.856 27.588 Atomic orbital electron populations 1.22184 0.94880 1.02206 1.02914 1.20891 0.93966 0.97667 0.83416 0.89294 1.20888 0.90523 1.02222 0.98612 1.20819 0.96772 0.96471 0.99355 1.21453 0.93621 0.98098 0.96471 1.22176 0.95937 0.99964 1.00728 1.22793 1.00160 0.90016 0.93411 1.67689 1.05532 1.27692 1.18164 1.22679 0.90944 0.96008 0.95931 1.46174 1.68898 1.13787 1.09808 1.21070 0.76810 0.87499 0.84547 1.90703 1.49142 1.16179 1.84896 1.21792 1.02340 1.00459 0.93292 1.21443 1.02432 0.97231 0.92980 1.21647 0.99114 0.99244 0.94750 1.19087 0.97202 0.94119 0.91270 1.21248 1.43688 0.96288 0.94732 0.92826 1.25042 0.95681 0.94870 0.98960 1.69967 1.48714 1.08184 1.26611 0.86670 0.79377 0.79386 0.82617 1.20288 1.21306 1.20290 0.91631 0.92410 0.91600 0.88984 0.90091 0.85096 0.84645 0.82798 0.82941 0.77052 0.89224 0.89360 0.91880 0.91825 0.93511 0.93544 0.96620 0.96606 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.48 37.15 0.35 -0.92 16 2 C 0.15 1.21 2.56 -67.93 -0.17 1.04 16 3 H 0.09 0.98 7.58 -51.92 -0.39 0.59 16 4 C -0.08 -0.47 4.92 -27.88 -0.14 -0.61 16 5 C -0.13 -1.01 4.96 -104.48 -0.52 -1.52 16 6 C -0.07 -0.50 9.27 -39.28 -0.36 -0.87 16 7 C -0.17 -1.28 10.11 -39.44 -0.40 -1.67 16 8 C 0.09 0.84 11.18 -17.55 -0.20 0.64 16 9 N -0.48 -5.23 10.36 -13.25 -0.14 -5.37 16 10 C 0.10 0.93 10.86 -17.55 -0.19 0.74 16 11 N -0.73 -6.78 4.54 -53.80 -0.24 -7.03 16 12 C 0.51 7.00 7.79 -10.98 -0.09 6.91 16 13 O -0.53 -9.67 15.64 5.56 0.09 -9.58 16 14 C -0.14 -1.84 5.70 -27.88 -0.16 -2.00 16 15 C -0.10 -1.87 4.50 -26.73 -0.12 -1.99 16 16 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 17 C 0.02 0.54 4.97 -27.89 -0.14 0.41 16 18 C -0.52 -15.15 9.11 -34.44 -0.31 -15.47 16 19 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 21 N -0.90 -27.75 13.29 55.43 0.74 -27.02 16 22 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.09 0.38 8.09 -51.93 -0.42 -0.04 16 30 H 0.08 0.33 8.10 -51.93 -0.42 -0.09 16 31 H 0.13 0.62 7.64 -52.48 -0.40 0.22 16 32 H 0.14 0.73 8.06 -52.48 -0.42 0.30 16 33 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.15 1.10 8.06 -52.48 -0.42 0.68 16 35 H 0.40 2.53 7.90 -40.82 -0.32 2.21 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 39 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 369.74 15.07 5.57 5.57 Total: -1.00 -35.79 369.74 -9.10 -44.89 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -7.41 Total: -2.27 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -2.68 Total: -16.20 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.35 Total: -39.41 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.79 -9.10 -44.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889672137.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.092 kcal (2) G-P(sol) polarization free energy of solvation -35.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.12 seconds