Wall clock time and date at job start Tue Mar 31 2020 07:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46970 * 2 1 4 4 C 1.52997 * 109.47404 * 240.00049 * 2 1 3 5 5 C 1.50701 * 109.47212 * 174.99684 * 4 2 1 6 6 C 1.38674 * 120.41757 * 90.00021 * 5 4 2 7 7 C 1.38621 * 118.42130 * 179.97438 * 6 5 4 8 8 C 1.38227 * 119.16178 * 0.02562 * 7 6 5 9 9 N 1.31855 * 120.76380 * 359.97438 * 8 7 6 10 10 C 1.31884 * 121.72115 * 359.70717 * 9 8 7 11 11 N 1.46504 * 109.47145 * 119.99584 * 2 1 3 12 12 C 1.34776 * 120.00219 * 275.00364 * 11 2 1 13 13 O 1.21274 * 120.00173 * 359.97438 * 12 11 2 14 14 C 1.50705 * 119.99786 * 180.02562 * 12 11 2 15 15 C 1.53004 * 109.46879 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.46987 * 179.97438 * 15 14 12 17 17 C 1.52997 * 109.47111 * 180.02562 * 16 15 14 18 18 C 1.50695 * 109.47310 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99750 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00488 * 180.02562 * 18 17 16 21 21 N 1.31522 * 119.99733 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00397 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47151 * 60.00058 * 22 20 18 24 24 H 1.48505 * 109.46960 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47212 * 299.99783 * 22 20 18 26 26 H 1.09000 * 109.47476 * 60.00038 * 1 2 3 27 27 H 1.09008 * 109.46970 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47654 * 299.99762 * 1 2 3 29 29 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 30 30 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 31 31 H 1.08004 * 120.78805 * 359.97438 * 6 5 4 32 32 H 1.08009 * 120.42155 * 180.02562 * 7 6 5 33 33 H 1.08001 * 119.61799 * 179.97438 * 8 7 6 34 34 H 1.08007 * 119.61602 * 180.31062 * 10 9 8 35 35 H 0.97006 * 119.99491 * 95.00433 * 11 2 1 36 36 H 1.08995 * 109.47237 * 299.99994 * 14 12 11 37 37 H 1.08997 * 109.46884 * 59.99911 * 14 12 11 38 38 H 1.08995 * 109.47352 * 300.00133 * 15 14 12 39 39 H 1.09001 * 109.46997 * 59.99922 * 15 14 12 40 40 H 1.09003 * 109.47081 * 300.00498 * 16 15 14 41 41 H 1.08997 * 109.46804 * 60.00103 * 16 15 14 42 42 H 1.09006 * 109.47129 * 300.00567 * 17 16 15 43 43 H 1.09001 * 109.47116 * 59.99806 * 17 16 15 44 44 H 0.96998 * 120.00136 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3127 6 6 4.3400 -1.5795 -0.7165 7 6 5.7167 -1.4410 -0.8006 8 6 6.2445 -0.3533 -1.4706 9 7 5.4549 0.5450 -2.0258 10 6 4.1412 0.4420 -1.9709 11 7 2.0183 -0.6905 1.1962 12 6 2.1470 -0.0182 2.3572 13 8 1.8589 1.1586 2.4116 14 6 2.6499 -0.7285 3.5875 15 6 2.7018 0.2548 4.7586 16 6 3.2117 -0.4664 6.0079 17 6 3.2630 0.5166 7.1791 18 6 3.7659 -0.1935 8.4094 19 1 4.0228 -1.2414 8.3609 20 6 3.8970 0.4941 9.5972 21 7 3.5837 1.7701 9.6564 22 14 4.5197 -0.3864 11.1224 23 1 5.8813 -0.9201 10.8647 24 1 4.5696 0.5679 12.2592 25 1 3.6038 -1.5067 11.4558 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.6054 -0.2617 -2.1370 30 1 1.7517 -1.7715 -1.2055 31 1 3.8993 -2.4189 -0.1990 32 1 6.3687 -2.1737 -0.3482 33 1 7.3161 -0.2379 -1.5403 34 1 3.5267 1.1950 -2.4420 35 1 2.2490 -1.6317 1.1527 36 1 1.9778 -1.5508 3.8326 37 1 3.6492 -1.1202 3.3979 38 1 3.3741 1.0769 4.5134 39 1 1.7026 0.6470 4.9483 40 1 2.5390 -1.2883 6.2530 41 1 4.2108 -0.8588 5.8184 42 1 3.9355 1.3389 6.9342 43 1 2.2637 0.9088 7.3684 44 1 3.6756 2.2538 10.4922 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889672137.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:13 Heat of formation + Delta-G solvation = -62.841604 kcal Electronic energy + Delta-G solvation = -22160.567011 eV Core-core repulsion = 18882.404696 eV Total energy + Delta-G solvation = -3278.162315 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.32967 -40.62357 -37.50110 -36.53499 -34.61444 -33.92593 -32.96286 -31.97829 -30.90897 -27.72224 -27.44671 -24.61315 -24.43980 -23.35081 -22.03883 -21.62798 -21.25903 -18.42408 -18.02793 -17.90269 -17.47445 -16.96857 -16.74913 -16.49705 -16.18671 -15.52721 -15.02572 -14.85036 -14.75455 -14.52407 -14.06300 -13.92165 -13.83010 -13.60494 -13.46725 -13.29192 -13.04523 -12.94498 -12.78396 -12.37156 -12.24280 -12.16210 -12.12917 -11.97716 -11.38600 -11.35755 -11.16641 -10.73560 -10.67456 -10.54873 -10.37668 -10.11487 -9.81183 -8.18874 -6.31536 0.19274 0.39418 1.40042 1.44325 1.52187 1.70758 2.25131 2.42104 2.87268 3.13662 3.54862 3.76489 3.85574 3.94337 3.98900 4.06360 4.12552 4.14438 4.16777 4.34904 4.40063 4.59893 4.66291 4.68838 4.76472 4.84027 4.86426 4.86871 4.88930 4.96625 5.10875 5.18539 5.22943 5.31983 5.33181 5.34045 5.37888 5.55484 5.62503 5.77237 5.83357 5.87392 6.24628 6.61695 6.86962 7.06281 7.34938 7.38262 8.93312 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.019766 B = 0.002665 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.212383 B =10504.171069 C =11330.451583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.145 3.855 3 H 0.056 0.944 4 C -0.072 4.072 5 C -0.135 4.135 6 C -0.075 4.075 7 C -0.171 4.171 8 C 0.070 3.930 9 N -0.520 5.520 10 C 0.078 3.922 11 N -0.711 5.711 12 C 0.511 3.489 13 O -0.590 6.590 14 C -0.129 4.129 15 C -0.096 4.096 16 C -0.095 4.095 17 C 0.019 3.981 18 C -0.543 4.543 19 H 0.067 0.933 20 C -0.007 4.007 21 N -0.939 5.939 22 Si 0.970 3.030 23 H -0.264 1.264 24 H -0.285 1.285 25 H -0.263 1.263 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.031 0.969 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.162 0.838 32 H 0.159 0.841 33 H 0.166 0.834 34 H 0.160 0.840 35 H 0.415 0.585 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.037 0.963 39 H 0.041 0.959 40 H 0.062 0.938 41 H 0.060 0.940 42 H -0.018 1.018 43 H -0.016 1.016 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.921 -13.331 -27.493 30.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.040 3.960 3 H 0.074 0.926 4 C -0.110 4.110 5 C -0.137 4.137 6 C -0.101 4.101 7 C -0.191 4.191 8 C -0.086 4.086 9 N -0.229 5.229 10 C -0.078 4.078 11 N -0.364 5.364 12 C 0.299 3.701 13 O -0.470 6.470 14 C -0.168 4.168 15 C -0.134 4.134 16 C -0.132 4.132 17 C -0.018 4.018 18 C -0.581 4.581 19 H 0.085 0.915 20 C -0.204 4.204 21 N -0.579 5.579 22 Si 0.794 3.206 23 H -0.189 1.189 24 H -0.211 1.211 25 H -0.188 1.188 26 H 0.101 0.899 27 H 0.097 0.903 28 H 0.050 0.950 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.180 0.820 32 H 0.176 0.824 33 H 0.183 0.817 34 H 0.177 0.823 35 H 0.252 0.748 36 H 0.138 0.862 37 H 0.133 0.867 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.000 1.000 43 H 0.002 0.998 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.754 -11.644 -27.810 30.201 hybrid contribution 0.117 -0.456 1.486 1.559 sum -1.637 -12.100 -26.324 29.018 Atomic orbital electron populations 1.22137 0.94149 1.03269 1.02131 1.20937 0.94459 0.96459 0.84101 0.92578 1.20868 0.89001 1.03635 0.97471 1.21030 0.97930 0.95954 0.98742 1.21888 0.93507 0.98667 0.96006 1.22485 0.96796 0.99738 1.00047 1.23144 1.00853 0.90600 0.93996 1.67641 1.06593 1.29044 1.19574 1.22974 0.90807 0.97147 0.96919 1.45976 1.67169 1.14523 1.08772 1.21140 0.76392 0.86814 0.85782 1.90696 1.51873 1.18626 1.85817 1.21670 1.04769 0.99456 0.90930 1.21234 1.00289 0.97649 0.94231 1.21443 1.00501 0.98029 0.93252 1.19049 0.94348 0.94605 0.93811 1.21735 1.43676 0.97077 0.95617 0.91462 1.26114 0.95703 0.95628 1.02995 1.70134 1.49915 1.10167 1.27714 0.85424 0.79331 0.78214 0.77617 1.18860 1.21104 1.18792 0.89907 0.90314 0.94982 0.87238 0.87235 0.82016 0.82354 0.81696 0.82279 0.74776 0.86177 0.86654 0.94376 0.93979 0.91903 0.92120 0.99958 0.99791 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.48 71.98 0.68 -1.51 16 2 C 0.15 2.17 2.56 44.99 0.12 2.29 16 3 H 0.06 1.25 7.58 -2.38 -0.02 1.24 16 4 C -0.07 -0.57 4.92 29.85 0.15 -0.42 16 5 C -0.13 -1.77 4.96 -19.77 -0.10 -1.87 16 6 C -0.07 -0.84 9.27 22.47 0.21 -0.63 16 7 C -0.17 -2.24 10.11 22.36 0.23 -2.01 16 8 C 0.07 1.24 11.18 84.69 0.95 2.18 16 9 N -0.52 -11.42 10.36 -195.84 -2.03 -13.45 16 10 C 0.08 1.41 10.86 84.67 0.92 2.33 16 11 N -0.71 -11.39 4.54 -442.53 -2.01 -13.40 16 12 C 0.51 13.42 7.79 87.66 0.68 14.10 16 13 O -0.59 -22.13 15.64 -3.01 -0.05 -22.18 16 14 C -0.13 -3.11 5.70 29.85 0.17 -2.94 16 15 C -0.10 -3.52 4.50 30.60 0.14 -3.38 16 16 C -0.09 -3.90 5.15 30.59 0.16 -3.74 16 17 C 0.02 1.06 4.97 29.85 0.15 1.21 16 18 C -0.54 -31.72 9.11 25.60 0.23 -31.49 16 19 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 20 C -0.01 -0.43 5.46 84.65 0.46 0.03 16 21 N -0.94 -59.68 13.29 21.45 0.28 -59.40 16 22 Si 0.97 44.92 29.54 68.60 2.03 46.94 16 23 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 24 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 25 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 26 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.11 0.56 8.09 -2.39 -0.02 0.54 16 30 H 0.11 0.32 8.10 -2.39 -0.02 0.30 16 31 H 0.16 0.72 7.64 -2.91 -0.02 0.70 16 32 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 33 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 34 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 35 H 0.41 3.48 7.90 -92.70 -0.73 2.75 16 36 H 0.12 2.22 8.14 -2.39 -0.02 2.21 16 37 H 0.12 2.21 8.14 -2.39 -0.02 2.20 16 38 H 0.04 1.56 8.10 -2.39 -0.02 1.54 16 39 H 0.04 1.69 8.10 -2.39 -0.02 1.68 16 40 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 42 H -0.02 -1.10 8.14 -2.38 -0.02 -1.12 16 43 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 44 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -82.79 369.74 3.60 -79.19 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 0.23 Total: 8.14 kcal Atomic # 6 Polarization: -30.99 SS G_CDS: 5.14 Total: -25.85 kcal Atomic # 7 Polarization: -82.49 SS G_CDS: -3.75 Total: -86.25 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.05 Total: -22.18 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -82.79 3.60 -79.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889672137.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.347 kcal (2) G-P(sol) polarization free energy of solvation -82.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds