Wall clock time and date at job start Tue Mar 31 2020 08:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47134 * 2 1 4 4 C 1.50700 * 109.47177 * 119.99628 * 2 1 3 5 5 H 1.08004 * 119.99888 * 119.99840 * 4 2 1 6 6 C 1.37868 * 120.00215 * 300.00008 * 4 2 1 7 7 N 1.31519 * 120.00107 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00361 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47252 * 89.99661 * 8 6 4 10 10 H 1.48495 * 109.47468 * 210.00357 * 8 6 4 11 11 H 1.48508 * 109.46725 * 330.00072 * 8 6 4 12 12 C 1.50697 * 109.47199 * 239.99744 * 2 1 3 13 13 O 1.21269 * 120.00584 * 246.03305 * 12 2 1 14 14 N 1.34782 * 119.99591 * 66.03050 * 12 2 1 15 15 C 1.46509 * 119.99546 * 184.67808 * 14 12 2 16 16 C 1.53000 * 109.46998 * 264.28968 * 15 14 12 17 17 C 1.52998 * 109.47166 * 55.30827 * 16 15 14 18 18 C 1.52997 * 109.46710 * 175.30657 * 16 15 14 19 19 C 1.52993 * 109.47306 * 295.30766 * 16 15 14 20 20 C 1.39399 * 120.00547 * 4.68176 * 14 12 2 21 21 C 1.39034 * 119.70265 * 193.75641 * 20 14 12 22 22 C 1.38361 * 119.10600 * 179.74409 * 21 20 14 23 23 C 1.38834 * 118.49216 * 0.49836 * 22 21 20 24 24 C 1.38075 * 119.31181 * 359.47970 * 23 22 21 25 25 N 1.31939 * 120.84927 * 0.27599 * 24 23 22 26 26 H 1.08997 * 109.47340 * 186.98143 * 1 2 3 27 27 H 1.08997 * 109.47368 * 306.97867 * 1 2 3 28 28 H 1.09003 * 109.47549 * 66.98213 * 1 2 3 29 29 H 0.96995 * 119.99924 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.46995 * 24.29612 * 15 14 12 31 31 H 1.08996 * 109.46531 * 144.29148 * 15 14 12 32 32 H 1.09008 * 109.47149 * 59.91092 * 17 16 15 33 33 H 1.08998 * 109.47193 * 179.91144 * 17 16 15 34 34 H 1.08994 * 109.47134 * 299.91181 * 17 16 15 35 35 H 1.08997 * 109.47178 * 60.00491 * 18 16 15 36 36 H 1.09004 * 109.47294 * 180.02562 * 18 16 15 37 37 H 1.08997 * 109.47513 * 300.00006 * 18 16 15 38 38 H 1.09001 * 109.47203 * 59.99940 * 19 16 15 39 39 H 1.09001 * 109.47428 * 179.97438 * 19 16 15 40 40 H 1.09002 * 109.47706 * 300.00202 * 19 16 15 41 41 H 1.08006 * 120.44475 * 0.02562 * 21 20 14 42 42 H 1.07998 * 120.75203 * 180.25910 * 22 21 20 43 43 H 1.07994 * 120.34766 * 179.75751 * 23 22 21 44 44 H 1.07998 * 119.57881 * 180.25253 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9427 0.8298 2.6034 8 14 2.3225 -1.1193 4.0080 9 1 3.6305 -0.5438 4.4118 10 1 1.3445 -0.9488 5.1123 11 1 2.4881 -2.5652 3.7123 12 6 2.0323 -0.7104 -1.2304 13 8 2.6366 -1.7563 -1.1226 14 7 1.8098 -0.1835 -2.4508 15 6 2.2070 -0.9231 -3.6515 16 6 3.5841 -0.4429 -4.1140 17 6 4.5839 -0.5769 -2.9636 18 6 4.0503 -1.2942 -5.2967 19 6 3.4952 1.0226 -4.5443 20 6 1.2019 1.0653 -2.5707 21 6 0.7155 1.4790 -3.8057 22 6 0.1096 2.7185 -3.9095 23 6 0.0201 3.5093 -2.7719 24 6 0.5246 3.0348 -1.5774 25 7 1.0927 1.8460 -1.5075 26 1 -0.3634 -1.0200 0.1249 27 1 -0.3634 0.6181 0.8209 28 1 -0.3634 0.4018 -0.9458 29 1 0.7088 1.1614 3.4843 30 1 2.2510 -1.9882 -3.4242 31 1 1.4774 -0.7502 -4.4425 32 1 4.6461 -1.6209 -2.6561 33 1 5.5653 -0.2363 -3.2936 34 1 4.2525 0.0308 -2.1217 35 1 3.3381 -1.1987 -6.1162 36 1 5.0316 -0.9525 -5.6260 37 1 4.1137 -2.3383 -4.9902 38 1 3.1630 1.6292 -3.7017 39 1 4.4764 1.3649 -4.8733 40 1 2.7830 1.1183 -5.3638 41 1 0.8053 0.8394 -4.6714 42 1 -0.2813 3.0647 -4.8548 43 1 -0.4434 4.4836 -2.8197 44 1 0.4535 3.6446 -0.6889 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891490510.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:51 Heat of formation + Delta-G solvation = 21.276526 kcal Electronic energy + Delta-G solvation = -24996.182903 eV Core-core repulsion = 21721.668224 eV Total energy + Delta-G solvation = -3274.514679 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -40.90163 -38.68913 -37.04444 -34.39542 -33.60313 -32.17740 -30.13897 -29.80902 -27.20331 -27.06128 -26.40757 -24.98188 -23.65388 -22.72168 -21.73332 -19.37495 -18.80064 -17.15394 -16.30461 -15.75700 -15.71618 -15.54221 -14.92145 -14.71346 -14.45727 -13.95103 -13.65440 -13.50149 -13.38866 -12.93697 -12.82218 -12.45798 -12.11128 -12.08400 -11.61253 -11.51631 -11.45043 -11.33985 -11.06073 -10.88776 -10.67561 -10.61105 -10.58212 -10.46715 -10.10495 -9.85900 -9.80434 -9.40961 -9.18803 -8.59076 -8.37353 -7.98365 -7.63871 -5.86840 -3.88303 1.45630 1.61949 3.20503 3.40475 3.45877 3.53620 3.59567 4.26185 4.56215 4.73119 4.87857 4.90380 4.97910 5.07672 5.27676 5.34703 5.38671 5.45588 5.50365 5.56579 5.63579 5.79475 5.85272 5.87527 5.99255 6.02495 6.13103 6.15287 6.18312 6.26655 6.31604 6.42624 6.50250 6.69867 6.78177 6.93659 6.99595 7.11462 7.27223 7.75722 7.97872 8.06095 8.21529 8.39522 8.57393 9.11511 9.18828 9.73933 11.20344 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.015623 B = 0.006703 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.807422 B = 4175.959090 C = 5510.108388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.032 3.968 3 H 0.102 0.898 4 C -0.505 4.505 5 H 0.067 0.933 6 C 0.061 3.939 7 N -0.892 5.892 8 Si 0.892 3.108 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.275 1.275 12 C 0.526 3.474 13 O -0.522 6.522 14 N -0.556 5.556 15 C 0.115 3.885 16 C -0.084 4.084 17 C -0.136 4.136 18 C -0.136 4.136 19 C -0.141 4.141 20 C 0.384 3.616 21 C -0.220 4.220 22 C -0.052 4.052 23 C -0.221 4.221 24 C 0.140 3.860 25 N -0.476 5.476 26 H 0.017 0.983 27 H 0.087 0.913 28 H 0.007 0.993 29 H 0.257 0.743 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.046 0.954 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.054 0.946 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.305 4.813 -16.650 17.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.012 3.988 3 H 0.119 0.881 4 C -0.544 4.544 5 H 0.085 0.915 6 C -0.139 4.139 7 N -0.531 5.531 8 Si 0.721 3.279 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.200 1.200 12 C 0.320 3.680 13 O -0.395 6.395 14 N -0.281 5.281 15 C -0.008 4.008 16 C -0.085 4.085 17 C -0.193 4.193 18 C -0.194 4.194 19 C -0.198 4.198 20 C 0.154 3.846 21 C -0.243 4.243 22 C -0.078 4.078 23 C -0.242 4.242 24 C -0.019 4.019 25 N -0.190 5.190 26 H 0.036 0.964 27 H 0.105 0.895 28 H 0.026 0.974 29 H 0.067 0.933 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.146 0.854 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.333 3.896 -15.598 16.081 hybrid contribution -0.118 -0.124 -0.005 0.171 sum 0.215 3.773 -15.603 16.054 Atomic orbital electron populations 1.21606 0.96728 0.99215 0.99255 1.19288 0.93919 0.98944 0.86688 0.88054 1.21286 1.30885 1.12498 0.89705 0.91451 1.24869 0.95295 0.95117 0.98667 1.69924 1.37187 1.23057 1.22949 0.86581 0.78415 0.80271 0.82655 1.20833 1.21423 1.19981 1.22742 0.76363 0.84784 0.84075 1.90520 1.39340 1.23853 1.85779 1.46125 1.57745 1.16031 1.08225 1.21694 0.94958 0.97651 0.86500 1.20936 0.95615 0.95840 0.96089 1.21834 0.97142 1.02957 0.97391 1.21792 1.00947 0.99770 0.96901 1.22032 1.01255 0.95471 1.01064 1.18429 0.90224 0.86294 0.89682 1.21514 1.05720 0.99231 0.97880 1.21229 0.95099 0.92958 0.98506 1.21918 1.06277 1.01854 0.94190 1.22755 0.91178 0.90682 0.97251 1.68252 1.17658 1.04741 1.28318 0.96353 0.89471 0.97411 0.93338 0.88926 0.90660 0.91805 0.93499 0.92348 0.92787 0.92476 0.92395 0.92323 0.92999 0.92737 0.85177 0.85405 0.85435 0.82448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.75 8.05 37.16 0.30 -2.45 16 2 C 0.03 0.85 1.74 -92.93 -0.16 0.68 16 3 H 0.10 2.75 5.87 -51.93 -0.30 2.45 16 4 C -0.50 -14.79 8.37 -34.44 -0.29 -15.08 16 5 H 0.07 2.07 6.77 -52.48 -0.36 1.72 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.58 11.40 55.43 0.63 -24.95 16 8 Si 0.89 22.39 29.54 -169.99 -5.02 17.37 16 9 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 11 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 12 C 0.53 12.43 5.52 -10.98 -0.06 12.37 16 13 O -0.52 -13.41 13.63 5.57 0.08 -13.33 16 14 N -0.56 -10.41 2.19 -115.38 -0.25 -10.66 16 15 C 0.11 1.72 4.36 -4.04 -0.02 1.71 16 16 C -0.08 -1.12 0.85 -154.51 -0.13 -1.25 16 17 C -0.14 -2.21 7.23 37.16 0.27 -1.94 16 18 C -0.14 -1.45 8.47 37.16 0.31 -1.13 16 19 C -0.14 -1.74 6.98 37.15 0.26 -1.48 16 20 C 0.38 6.66 4.27 -154.71 -0.66 6.00 16 21 C -0.22 -2.96 7.18 -39.24 -0.28 -3.24 16 22 C -0.05 -0.60 10.17 -39.32 -0.40 -1.00 16 23 C -0.22 -2.70 10.11 -39.42 -0.40 -3.10 16 24 C 0.14 2.16 11.18 -17.57 -0.20 1.97 16 25 N -0.48 -9.03 4.44 -12.37 -0.05 -9.08 16 26 H 0.02 0.46 8.13 -51.93 -0.42 0.03 16 27 H 0.09 2.34 6.29 -51.93 -0.33 2.01 16 28 H 0.01 0.16 5.59 -51.93 -0.29 -0.13 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.09 1.51 7.32 -51.93 -0.38 1.13 16 31 H 0.08 0.92 6.05 -51.93 -0.31 0.60 16 32 H 0.06 1.12 7.65 -51.92 -0.40 0.73 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 1.14 6.54 -51.93 -0.34 0.80 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.86 5.69 -51.93 -0.30 0.57 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.57 7.10 -51.93 -0.37 0.20 16 41 H 0.13 1.47 5.29 -52.48 -0.28 1.20 16 42 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 43 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 44 H 0.16 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 333.77 15.07 5.03 5.03 Total: -1.00 -31.97 333.77 -7.73 -39.70 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -6.59 Total: 2.23 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -1.55 Total: -6.30 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: 0.32 Total: -44.69 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.08 Total: -13.33 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.97 -7.73 -39.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891490510.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.974 kcal (2) G-P(sol) polarization free energy of solvation -31.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds