Wall clock time and date at job start Tue Mar 31 2020 08:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47134 * 2 1 4 4 C 1.50700 * 109.47177 * 119.99628 * 2 1 3 5 5 H 1.08004 * 119.99888 * 119.99840 * 4 2 1 6 6 C 1.37868 * 120.00215 * 300.00008 * 4 2 1 7 7 N 1.31519 * 120.00107 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00361 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47252 * 89.99661 * 8 6 4 10 10 H 1.48495 * 109.47468 * 210.00357 * 8 6 4 11 11 H 1.48508 * 109.46725 * 330.00072 * 8 6 4 12 12 C 1.50697 * 109.47199 * 239.99744 * 2 1 3 13 13 O 1.21269 * 120.00584 * 246.03305 * 12 2 1 14 14 N 1.34782 * 119.99591 * 66.03050 * 12 2 1 15 15 C 1.46509 * 119.99546 * 184.67808 * 14 12 2 16 16 C 1.53000 * 109.46998 * 264.28968 * 15 14 12 17 17 C 1.52998 * 109.47166 * 55.30827 * 16 15 14 18 18 C 1.52997 * 109.46710 * 175.30657 * 16 15 14 19 19 C 1.52993 * 109.47306 * 295.30766 * 16 15 14 20 20 C 1.39399 * 120.00547 * 4.68176 * 14 12 2 21 21 C 1.39034 * 119.70265 * 193.75641 * 20 14 12 22 22 C 1.38361 * 119.10600 * 179.74409 * 21 20 14 23 23 C 1.38834 * 118.49216 * 0.49836 * 22 21 20 24 24 C 1.38075 * 119.31181 * 359.47970 * 23 22 21 25 25 N 1.31939 * 120.84927 * 0.27599 * 24 23 22 26 26 H 1.08997 * 109.47340 * 186.98143 * 1 2 3 27 27 H 1.08997 * 109.47368 * 306.97867 * 1 2 3 28 28 H 1.09003 * 109.47549 * 66.98213 * 1 2 3 29 29 H 0.96995 * 119.99924 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.46995 * 24.29612 * 15 14 12 31 31 H 1.08996 * 109.46531 * 144.29148 * 15 14 12 32 32 H 1.09008 * 109.47149 * 59.91092 * 17 16 15 33 33 H 1.08998 * 109.47193 * 179.91144 * 17 16 15 34 34 H 1.08994 * 109.47134 * 299.91181 * 17 16 15 35 35 H 1.08997 * 109.47178 * 60.00491 * 18 16 15 36 36 H 1.09004 * 109.47294 * 180.02562 * 18 16 15 37 37 H 1.08997 * 109.47513 * 300.00006 * 18 16 15 38 38 H 1.09001 * 109.47203 * 59.99940 * 19 16 15 39 39 H 1.09001 * 109.47428 * 179.97438 * 19 16 15 40 40 H 1.09002 * 109.47706 * 300.00202 * 19 16 15 41 41 H 1.08006 * 120.44475 * 0.02562 * 21 20 14 42 42 H 1.07998 * 120.75203 * 180.25910 * 22 21 20 43 43 H 1.07994 * 120.34766 * 179.75751 * 23 22 21 44 44 H 1.07998 * 119.57881 * 180.25253 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9427 0.8298 2.6034 8 14 2.3225 -1.1193 4.0080 9 1 3.6305 -0.5438 4.4118 10 1 1.3445 -0.9488 5.1123 11 1 2.4881 -2.5652 3.7123 12 6 2.0323 -0.7104 -1.2304 13 8 2.6366 -1.7563 -1.1226 14 7 1.8098 -0.1835 -2.4508 15 6 2.2070 -0.9231 -3.6515 16 6 3.5841 -0.4429 -4.1140 17 6 4.5839 -0.5769 -2.9636 18 6 4.0503 -1.2942 -5.2967 19 6 3.4952 1.0226 -4.5443 20 6 1.2019 1.0653 -2.5707 21 6 0.7155 1.4790 -3.8057 22 6 0.1096 2.7185 -3.9095 23 6 0.0201 3.5093 -2.7719 24 6 0.5246 3.0348 -1.5774 25 7 1.0927 1.8460 -1.5075 26 1 -0.3634 -1.0200 0.1249 27 1 -0.3634 0.6181 0.8209 28 1 -0.3634 0.4018 -0.9458 29 1 0.7088 1.1614 3.4843 30 1 2.2510 -1.9882 -3.4242 31 1 1.4774 -0.7502 -4.4425 32 1 4.6461 -1.6209 -2.6561 33 1 5.5653 -0.2363 -3.2936 34 1 4.2525 0.0308 -2.1217 35 1 3.3381 -1.1987 -6.1162 36 1 5.0316 -0.9525 -5.6260 37 1 4.1137 -2.3383 -4.9902 38 1 3.1630 1.6292 -3.7017 39 1 4.4764 1.3649 -4.8733 40 1 2.7830 1.1183 -5.3638 41 1 0.8053 0.8394 -4.6714 42 1 -0.2813 3.0647 -4.8548 43 1 -0.4434 4.4836 -2.8197 44 1 0.4535 3.6446 -0.6889 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891490510.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:50 Heat of formation + Delta-G solvation = 3.338203 kcal Electronic energy + Delta-G solvation = -24996.960767 eV Core-core repulsion = 21721.668224 eV Total energy + Delta-G solvation = -3275.292543 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.25040 -40.06767 -38.41651 -35.89933 -35.51150 -33.46249 -32.10136 -30.98587 -28.35084 -28.09449 -27.66772 -27.15698 -25.01258 -23.94267 -23.42218 -20.86918 -19.92350 -18.68209 -18.01611 -17.57450 -17.08649 -16.74403 -16.42314 -16.20830 -15.77657 -15.34725 -15.09969 -14.91827 -14.72363 -14.36895 -14.30509 -13.76791 -13.45672 -13.17888 -13.09004 -12.95340 -12.72226 -12.66049 -12.63062 -12.57519 -12.42696 -12.30005 -12.08809 -12.00680 -11.75190 -11.55710 -11.12864 -11.02313 -10.62091 -10.50482 -10.30607 -9.64890 -8.91042 -8.07486 -6.16704 0.30266 0.57448 1.37374 1.37940 1.49628 1.83525 1.93813 2.45505 3.09059 3.19984 3.53293 3.79030 3.85288 3.88545 4.06670 4.15942 4.26799 4.38400 4.46311 4.53701 4.65767 4.67168 4.71811 4.83030 4.88552 4.89590 4.95216 5.00640 5.03164 5.05250 5.14830 5.16134 5.20314 5.28016 5.37658 5.42755 5.48067 5.58447 5.65392 5.85682 5.95676 6.02007 6.22843 6.57909 6.92736 7.14794 7.43612 7.51702 8.97865 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.015623 B = 0.006703 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.807422 B = 4175.959090 C = 5510.108388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.033 3.967 3 H 0.088 0.912 4 C -0.537 4.537 5 H 0.041 0.959 6 C 0.021 3.979 7 N -0.905 5.905 8 Si 0.950 3.050 9 H -0.275 1.275 10 H -0.273 1.273 11 H -0.281 1.281 12 C 0.526 3.474 13 O -0.561 6.561 14 N -0.551 5.551 15 C 0.110 3.890 16 C -0.079 4.079 17 C -0.130 4.130 18 C -0.130 4.130 19 C -0.134 4.134 20 C 0.347 3.653 21 C -0.203 4.203 22 C -0.042 4.042 23 C -0.197 4.197 24 C 0.110 3.890 25 N -0.528 5.528 26 H -0.002 1.002 27 H 0.065 0.935 28 H 0.030 0.970 29 H 0.261 0.739 30 H 0.072 0.928 31 H 0.115 0.885 32 H 0.039 0.961 33 H 0.063 0.937 34 H 0.014 0.986 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.049 0.951 38 H 0.030 0.970 39 H 0.061 0.939 40 H 0.085 0.915 41 H 0.159 0.841 42 H 0.177 0.823 43 H 0.164 0.836 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.314 6.351 -20.052 21.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.012 3.988 3 H 0.105 0.895 4 C -0.575 4.575 5 H 0.059 0.941 6 C -0.178 4.178 7 N -0.544 5.544 8 Si 0.776 3.224 9 H -0.200 1.200 10 H -0.198 1.198 11 H -0.207 1.207 12 C 0.319 3.681 13 O -0.438 6.438 14 N -0.276 5.276 15 C -0.011 4.011 16 C -0.080 4.080 17 C -0.188 4.188 18 C -0.187 4.187 19 C -0.191 4.191 20 C 0.119 3.881 21 C -0.226 4.226 22 C -0.068 4.068 23 C -0.218 4.218 24 C -0.047 4.047 25 N -0.243 5.243 26 H 0.017 0.983 27 H 0.084 0.916 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.133 0.867 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.034 0.966 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.050 0.950 39 H 0.080 0.920 40 H 0.103 0.897 41 H 0.177 0.823 42 H 0.194 0.806 43 H 0.181 0.819 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.703 5.497 -19.036 19.826 hybrid contribution 0.167 -0.447 0.992 1.101 sum -0.537 5.050 -18.044 18.745 Atomic orbital electron populations 1.21315 0.96226 0.97374 0.99511 1.19112 0.94264 0.98078 0.87370 0.89459 1.21480 1.31608 1.12427 0.92024 0.94113 1.25532 0.95372 0.95825 1.01031 1.70013 1.37179 1.23488 1.23734 0.85697 0.78448 0.78719 0.79582 1.20032 1.19813 1.20656 1.22106 0.76273 0.84210 0.85533 1.90482 1.41168 1.25334 1.86801 1.45833 1.57447 1.16864 1.07466 1.21991 0.97054 0.96226 0.85836 1.20936 0.93598 0.97616 0.95837 1.21769 0.99127 1.00449 0.97429 1.21748 1.02284 0.98595 0.96106 1.21971 1.02662 0.93601 1.00850 1.18681 0.92408 0.85840 0.91162 1.21810 1.03928 1.00185 0.96687 1.21790 0.93384 0.91561 1.00025 1.22290 1.03672 1.02987 0.92881 1.22893 0.92606 0.90160 0.99041 1.67902 1.19217 1.06571 1.30571 0.98309 0.91616 0.95123 0.92942 0.90928 0.86734 0.94222 0.91771 0.96628 0.89942 0.91339 0.93161 0.95043 0.92022 0.89660 0.82346 0.80552 0.81852 0.82873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -4.51 8.05 71.98 0.58 -3.94 16 2 C 0.03 1.82 1.74 -12.29 -0.02 1.79 16 3 H 0.09 5.09 5.87 -2.39 -0.01 5.07 16 4 C -0.54 -33.41 8.37 25.60 0.21 -33.19 16 5 H 0.04 2.69 6.77 -2.91 -0.02 2.67 16 6 C 0.02 1.28 5.30 84.65 0.45 1.72 16 7 N -0.90 -53.58 11.40 21.44 0.24 -53.34 16 8 Si 0.95 47.39 29.54 68.60 2.03 49.41 16 9 H -0.27 -13.30 7.11 99.48 0.71 -12.60 16 10 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.28 -14.23 7.11 99.48 0.71 -13.53 16 12 C 0.53 26.37 5.52 87.66 0.48 26.86 16 13 O -0.56 -31.04 13.63 -2.99 -0.04 -31.08 16 14 N -0.55 -21.03 2.19 -637.34 -1.40 -22.42 16 15 C 0.11 3.20 4.36 86.38 0.38 3.58 16 16 C -0.08 -2.00 0.85 -52.19 -0.04 -2.04 16 17 C -0.13 -4.41 7.23 71.98 0.52 -3.89 16 18 C -0.13 -2.37 8.47 71.98 0.61 -1.76 16 19 C -0.13 -2.90 6.98 71.98 0.50 -2.40 16 20 C 0.35 11.82 4.27 132.92 0.57 12.39 16 21 C -0.20 -4.67 7.18 22.49 0.16 -4.51 16 22 C -0.04 -0.74 10.17 22.44 0.23 -0.52 16 23 C -0.20 -4.10 10.11 22.37 0.23 -3.87 16 24 C 0.11 3.36 11.18 84.64 0.95 4.30 16 25 N -0.53 -20.45 4.44 -193.04 -0.86 -21.31 16 26 H 0.00 -0.13 8.13 -2.39 -0.02 -0.14 16 27 H 0.07 3.68 6.29 -2.39 -0.02 3.67 16 28 H 0.03 1.41 5.59 -2.39 -0.01 1.40 16 29 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 30 H 0.07 2.41 7.32 -2.39 -0.02 2.39 16 31 H 0.11 2.37 6.05 -2.39 -0.01 2.35 16 32 H 0.04 1.49 7.65 -2.38 -0.02 1.47 16 33 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.01 0.62 6.54 -2.39 -0.02 0.61 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 37 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.03 0.86 5.69 -2.39 -0.01 0.85 16 39 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.08 1.32 7.10 -2.39 -0.02 1.30 16 41 H 0.16 2.66 5.29 -2.91 -0.02 2.64 16 42 H 0.18 1.55 8.06 -2.91 -0.02 1.53 16 43 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 44 H 0.15 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -76.77 333.77 6.77 -70.00 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.99 Total: 14.20 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: 5.80 Total: -5.47 kcal Atomic # 7 Polarization: -95.06 SS G_CDS: -2.01 Total: -97.07 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -0.04 Total: -31.08 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.41 kcal Total: -76.77 6.77 -70.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891490510.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.341 kcal (2) G-P(sol) polarization free energy of solvation -76.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds