Wall clock time and date at job start Tue Mar 31 2020 07:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.45104 * 2 1 4 4 N 1.46843 * 109.42751 * 119.99457 * 2 1 3 5 5 C 1.46843 * 111.23596 * 58.31487 * 4 2 1 6 6 C 1.53038 * 109.52568 * 61.72136 * 5 4 2 7 7 C 1.53121 * 109.27753 * 300.82428 * 6 5 4 8 8 C 1.53032 * 109.46147 * 240.02507 * 2 1 3 9 9 H 1.09000 * 109.50425 * 179.18343 * 8 2 1 10 10 N 1.46908 * 109.50501 * 59.10606 * 8 2 1 11 11 C 1.46900 * 110.99818 * 155.07761 * 10 8 2 12 12 C 1.50694 * 109.46940 * 180.02562 * 11 10 8 13 13 C 1.38298 * 119.93781 * 89.99461 * 12 11 10 14 14 C 1.38103 * 120.07435 * 179.97438 * 13 12 11 15 15 C 1.38877 * 119.92789 * 0.02562 * 14 13 12 16 16 O 1.35749 * 120.06593 * 179.97438 * 15 14 13 17 17 C 1.34832 * 117.00380 * 5.53672 * 16 15 14 18 18 H 1.08004 * 119.99587 * 354.93716 * 17 16 15 19 19 C 1.38647 * 120.00333 * 174.94646 * 17 16 15 20 20 N 1.31560 * 120.00089 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00198 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47267 * 89.99734 * 21 19 17 23 23 H 1.48499 * 109.47045 * 329.99804 * 21 19 17 24 24 H 1.48501 * 109.47366 * 209.99969 * 21 19 17 25 25 C 1.38880 * 119.86334 * 0.24751 * 15 14 13 26 26 C 1.38102 * 119.92973 * 359.49935 * 25 15 14 27 27 H 1.09001 * 109.47056 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47645 * 299.97418 * 1 2 3 29 29 H 1.08999 * 109.47084 * 59.97774 * 1 2 3 30 30 H 1.00896 * 110.96687 * 182.41050 * 4 2 1 31 31 H 1.09004 * 109.46228 * 301.70617 * 5 4 2 32 32 H 1.09002 * 109.46081 * 181.73657 * 5 4 2 33 33 H 1.08998 * 109.50384 * 180.88553 * 6 5 4 34 34 H 1.08996 * 109.53452 * 60.77985 * 6 5 4 35 35 H 1.09002 * 109.52289 * 297.75076 * 7 6 5 36 36 H 1.08991 * 109.52275 * 177.55887 * 7 6 5 37 37 H 1.00895 * 110.99316 * 31.12470 * 10 8 2 38 38 H 1.08992 * 109.47545 * 60.00021 * 11 10 8 39 39 H 1.09004 * 109.47213 * 299.99561 * 11 10 8 40 40 H 1.07999 * 119.96211 * 0.02562 * 13 12 11 41 41 H 1.07997 * 120.03183 * 179.97438 * 14 13 12 42 42 H 0.97001 * 119.99772 * 359.97438 * 20 19 17 43 43 H 1.07994 * 120.03392 * 179.72644 * 25 15 14 44 44 H 1.08000 * 119.96842 * 180.27175 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 7 2.0185 -0.6923 1.1994 5 6 1.5174 -2.0713 1.2586 6 6 2.0277 -2.8535 0.0463 7 6 1.5452 -2.1699 -1.2361 8 6 2.0399 -0.7209 -1.2499 9 1 3.1298 -0.7086 -1.2579 10 7 1.5329 -0.0410 -2.4494 11 6 2.4105 -0.2832 -3.6023 12 6 1.8599 0.4288 -4.8110 13 6 2.2471 1.7284 -5.0823 14 6 1.7448 2.3834 -6.1895 15 6 0.8494 1.7357 -7.0306 16 8 0.3534 2.3770 -8.1194 17 6 0.8560 3.5980 -8.3924 18 1 1.5580 4.0574 -7.7122 19 6 0.4717 4.2638 -9.5462 20 7 -0.3831 3.7040 -10.3750 21 14 1.1675 5.9557 -9.9242 22 1 2.4134 5.8122 -10.7194 23 1 1.4700 6.6616 -8.6532 24 1 0.1723 6.7382 -10.7003 25 6 0.4580 0.4326 -6.7523 26 6 0.9680 -0.2188 -5.6465 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5134 0.8901 29 1 -0.3633 0.5142 -0.8898 30 1 3.0263 -0.6717 1.2429 31 1 0.4274 -2.0623 1.2524 32 1 1.8713 -2.5473 2.1731 33 1 1.6428 -3.8726 0.0824 34 1 3.1174 -2.8754 0.0590 35 1 0.4557 -2.1830 -1.2680 36 1 1.9423 -2.6988 -2.1024 37 1 1.4186 0.9476 -2.2834 38 1 2.4607 -1.3535 -3.8022 39 1 3.4100 0.0929 -3.3836 40 1 2.9438 2.2314 -4.4281 41 1 2.0473 3.3984 -6.4005 42 1 -0.7442 2.8253 -10.1789 43 1 -0.2415 -0.0722 -7.4021 44 1 0.6675 -1.2337 -5.4320 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925622515.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:51 Heat of formation + Delta-G solvation = -13.637181 kcal Electronic energy + Delta-G solvation = -22692.631916 eV Core-core repulsion = 19416.603265 eV Total energy + Delta-G solvation = -3276.028651 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 3.73 seconds Orbital eigenvalues (eV) -39.92430 -39.10409 -37.03483 -35.04088 -32.38139 -32.29318 -31.04155 -30.23055 -28.84667 -27.13473 -25.20903 -24.29061 -22.73575 -22.26818 -21.92222 -20.52450 -19.24619 -18.38293 -16.99208 -16.57332 -16.03002 -15.46301 -15.15413 -14.99447 -14.59782 -14.36456 -14.00413 -13.73265 -13.61066 -13.30658 -13.22218 -13.04282 -12.70801 -12.36647 -12.20733 -12.14167 -11.90825 -11.56078 -11.27871 -11.16516 -11.11475 -10.94429 -10.75088 -10.59982 -10.48777 -10.32713 -10.28253 -9.41900 -8.83101 -8.70914 -8.34590 -8.23627 -7.26669 -6.78474 -4.07673 2.14939 2.21160 3.22612 3.28369 3.42242 3.86696 4.10297 4.18337 4.47639 4.62072 4.62798 4.72460 4.93101 4.98125 5.06726 5.17289 5.18344 5.24994 5.28797 5.32848 5.39290 5.52530 5.62293 5.66275 5.68664 5.73057 5.78176 5.86097 5.92365 5.95921 6.04884 6.13955 6.24119 6.35653 6.62129 6.69738 6.81502 6.99735 7.05810 7.10163 7.24368 7.28698 7.42379 7.55474 7.72083 8.38912 8.90748 9.59794 10.65666 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.035721 B = 0.002705 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.660050 B =10347.891083 C =10650.393067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.082 3.918 3 H 0.079 0.921 4 N -0.679 5.679 5 C 0.052 3.948 6 C -0.157 4.157 7 C -0.109 4.109 8 C 0.056 3.944 9 H 0.037 0.963 10 N -0.674 5.674 11 C 0.119 3.881 12 C -0.182 4.182 13 C -0.066 4.066 14 C -0.230 4.230 15 C 0.159 3.841 16 O -0.203 6.203 17 C -0.472 4.472 18 H 0.084 0.916 19 C 0.010 3.990 20 N -0.882 5.882 21 Si 1.099 2.901 22 H -0.281 1.281 23 H -0.283 1.283 24 H -0.275 1.275 25 C -0.197 4.197 26 C -0.051 4.051 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.338 0.662 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.342 0.658 38 H 0.069 0.931 39 H 0.026 0.974 40 H 0.103 0.897 41 H 0.127 0.873 42 H 0.282 0.718 43 H 0.114 0.886 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.692 -9.548 20.202 23.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.028 4.028 3 H 0.097 0.903 4 N -0.307 5.307 5 C -0.078 4.078 6 C -0.197 4.197 7 C -0.147 4.147 8 C -0.055 4.055 9 H 0.055 0.945 10 N -0.307 5.307 11 C -0.009 4.009 12 C -0.184 4.184 13 C -0.084 4.084 14 C -0.250 4.250 15 C 0.106 3.894 16 O -0.107 6.107 17 C -0.548 4.548 18 H 0.101 0.899 19 C -0.196 4.196 20 N -0.514 5.514 21 Si 0.923 3.077 22 H -0.207 1.207 23 H -0.208 1.208 24 H -0.200 1.200 25 C -0.216 4.216 26 C -0.070 4.070 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.156 0.844 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.161 0.839 38 H 0.087 0.913 39 H 0.044 0.956 40 H 0.121 0.879 41 H 0.145 0.855 42 H 0.092 0.908 43 H 0.133 0.867 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.523 -8.586 19.143 21.462 hybrid contribution 1.547 -1.149 0.641 2.031 sum 6.070 -9.735 19.784 22.870 Atomic orbital electron populations 1.21838 0.93543 1.02367 1.02106 1.21717 0.97014 0.97145 0.86950 0.90304 1.60733 1.15022 1.15959 1.39007 1.22081 1.01174 0.87678 0.96821 1.22290 1.00819 1.00179 0.96431 1.21593 1.02035 0.94363 0.96726 1.22269 0.96593 0.95486 0.91181 0.94503 1.60580 1.50460 1.16520 1.03095 1.20651 0.92459 0.99382 0.88416 1.19125 1.04827 0.95617 0.98784 1.20599 0.98046 0.93726 0.96073 1.21129 1.04064 1.01774 0.97986 1.19250 0.91367 0.91221 0.87609 1.83666 1.56754 1.31195 1.39065 1.22235 1.29852 0.92051 1.10657 0.89873 1.26541 0.96556 1.05637 0.90843 1.70544 1.26161 1.18021 1.36630 0.83051 0.76098 0.72214 0.76335 1.20714 1.20828 1.20023 1.20206 1.06737 0.93562 1.01134 1.20447 0.95100 0.98379 0.93071 0.92306 0.92618 0.91067 0.84440 0.90311 0.90972 0.91380 0.92363 0.90699 0.92202 0.83883 0.91302 0.95616 0.87875 0.85538 0.90755 0.86746 0.87063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.42 37.16 0.31 -1.03 16 2 C 0.08 0.74 3.07 -67.73 -0.21 0.54 16 3 H 0.08 0.73 8.13 -51.93 -0.42 0.31 16 4 N -0.68 -5.60 6.67 -106.76 -0.71 -6.31 16 5 C 0.05 0.39 6.26 -3.84 -0.02 0.36 16 6 C -0.16 -1.19 6.08 -26.65 -0.16 -1.35 16 7 C -0.11 -1.03 5.19 -26.61 -0.14 -1.17 16 8 C 0.06 0.55 2.33 -67.63 -0.16 0.40 16 9 H 0.04 0.38 7.80 -51.93 -0.41 -0.03 16 10 N -0.67 -7.98 5.56 -107.91 -0.60 -8.58 16 11 C 0.12 1.57 5.61 -4.98 -0.03 1.55 16 12 C -0.18 -3.05 5.40 -104.58 -0.56 -3.62 16 13 C -0.07 -1.19 9.69 -39.61 -0.38 -1.57 16 14 C -0.23 -5.04 9.17 -39.39 -0.36 -5.40 16 15 C 0.16 3.86 6.65 -39.11 -0.26 3.60 16 16 O -0.20 -5.75 9.16 0.04 0.00 -5.75 16 17 C -0.47 -13.34 9.49 30.88 0.29 -13.05 16 18 H 0.08 2.21 5.20 -52.48 -0.27 1.94 16 19 C 0.01 0.27 5.49 -17.52 -0.10 0.17 16 20 N -0.88 -26.44 13.70 55.48 0.76 -25.68 16 21 Si 1.10 23.78 29.92 -169.99 -5.09 18.70 16 22 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 24 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 25 C -0.20 -4.17 9.99 -39.39 -0.39 -4.56 16 26 C -0.05 -0.92 9.69 -39.61 -0.38 -1.30 16 27 H 0.06 0.56 4.80 -51.93 -0.25 0.31 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.75 7.43 -51.93 -0.39 0.36 16 30 H 0.34 2.47 8.86 -39.29 -0.35 2.12 16 31 H 0.08 0.63 6.19 -51.93 -0.32 0.31 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.78 6.56 -51.93 -0.34 0.44 16 36 H 0.06 0.61 7.53 -51.93 -0.39 0.22 16 37 H 0.34 4.11 8.14 -39.29 -0.32 3.79 16 38 H 0.07 0.89 7.44 -51.93 -0.39 0.50 16 39 H 0.03 0.33 8.00 -51.93 -0.42 -0.09 16 40 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.13 2.82 5.64 -52.49 -0.30 2.52 16 42 H 0.28 8.66 7.97 -40.82 -0.33 8.34 16 43 H 0.11 2.32 8.06 -52.49 -0.42 1.90 16 44 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 345.28 15.07 5.20 5.20 Total: -1.00 -29.80 345.28 -9.62 -39.42 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -6.64 Total: 9.44 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: -2.55 Total: -26.44 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: -0.55 Total: -40.57 kcal Atomic # 8 Polarization: -5.75 SS G_CDS: 0.00 Total: -5.75 kcal Atomic # 14 Polarization: 23.78 SS G_CDS: -5.09 Total: 18.70 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.80 -9.62 -39.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925622515.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.784 kcal (2) G-P(sol) polarization free energy of solvation -29.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.73 seconds