Wall clock time and date at job start Tue Mar 31 2020 07:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.45104 * 2 1 4 4 N 1.46843 * 109.42751 * 119.99457 * 2 1 3 5 5 C 1.46843 * 111.23596 * 58.31487 * 4 2 1 6 6 C 1.53038 * 109.52568 * 61.72136 * 5 4 2 7 7 C 1.53121 * 109.27753 * 300.82428 * 6 5 4 8 8 C 1.53032 * 109.46147 * 240.02507 * 2 1 3 9 9 H 1.09000 * 109.50425 * 179.18343 * 8 2 1 10 10 N 1.46908 * 109.50501 * 59.10606 * 8 2 1 11 11 C 1.46900 * 110.99818 * 155.07761 * 10 8 2 12 12 C 1.50694 * 109.46940 * 180.02562 * 11 10 8 13 13 C 1.38298 * 119.93781 * 89.99461 * 12 11 10 14 14 C 1.38103 * 120.07435 * 179.97438 * 13 12 11 15 15 C 1.38877 * 119.92789 * 0.02562 * 14 13 12 16 16 O 1.35749 * 120.06593 * 179.97438 * 15 14 13 17 17 C 1.34832 * 117.00380 * 5.53672 * 16 15 14 18 18 H 1.08004 * 119.99587 * 354.93716 * 17 16 15 19 19 C 1.38647 * 120.00333 * 174.94646 * 17 16 15 20 20 N 1.31560 * 120.00089 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00198 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47267 * 89.99734 * 21 19 17 23 23 H 1.48499 * 109.47045 * 329.99804 * 21 19 17 24 24 H 1.48501 * 109.47366 * 209.99969 * 21 19 17 25 25 C 1.38880 * 119.86334 * 0.24751 * 15 14 13 26 26 C 1.38102 * 119.92973 * 359.49935 * 25 15 14 27 27 H 1.09001 * 109.47056 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47645 * 299.97418 * 1 2 3 29 29 H 1.08999 * 109.47084 * 59.97774 * 1 2 3 30 30 H 1.00896 * 110.96687 * 182.41050 * 4 2 1 31 31 H 1.09004 * 109.46228 * 301.70617 * 5 4 2 32 32 H 1.09002 * 109.46081 * 181.73657 * 5 4 2 33 33 H 1.08998 * 109.50384 * 180.88553 * 6 5 4 34 34 H 1.08996 * 109.53452 * 60.77985 * 6 5 4 35 35 H 1.09002 * 109.52289 * 297.75076 * 7 6 5 36 36 H 1.08991 * 109.52275 * 177.55887 * 7 6 5 37 37 H 1.00895 * 110.99316 * 31.12470 * 10 8 2 38 38 H 1.08992 * 109.47545 * 60.00021 * 11 10 8 39 39 H 1.09004 * 109.47213 * 299.99561 * 11 10 8 40 40 H 1.07999 * 119.96211 * 0.02562 * 13 12 11 41 41 H 1.07997 * 120.03183 * 179.97438 * 14 13 12 42 42 H 0.97001 * 119.99772 * 359.97438 * 20 19 17 43 43 H 1.07994 * 120.03392 * 179.72644 * 25 15 14 44 44 H 1.08000 * 119.96842 * 180.27175 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 7 2.0185 -0.6923 1.1994 5 6 1.5174 -2.0713 1.2586 6 6 2.0277 -2.8535 0.0463 7 6 1.5452 -2.1699 -1.2361 8 6 2.0399 -0.7209 -1.2499 9 1 3.1298 -0.7086 -1.2579 10 7 1.5329 -0.0410 -2.4494 11 6 2.4105 -0.2832 -3.6023 12 6 1.8599 0.4288 -4.8110 13 6 2.2471 1.7284 -5.0823 14 6 1.7448 2.3834 -6.1895 15 6 0.8494 1.7357 -7.0306 16 8 0.3534 2.3770 -8.1194 17 6 0.8560 3.5980 -8.3924 18 1 1.5580 4.0574 -7.7122 19 6 0.4717 4.2638 -9.5462 20 7 -0.3831 3.7040 -10.3750 21 14 1.1675 5.9557 -9.9242 22 1 2.4134 5.8122 -10.7194 23 1 1.4700 6.6616 -8.6532 24 1 0.1723 6.7382 -10.7003 25 6 0.4580 0.4326 -6.7523 26 6 0.9680 -0.2188 -5.6465 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5134 0.8901 29 1 -0.3633 0.5142 -0.8898 30 1 3.0263 -0.6717 1.2429 31 1 0.4274 -2.0623 1.2524 32 1 1.8713 -2.5473 2.1731 33 1 1.6428 -3.8726 0.0824 34 1 3.1174 -2.8754 0.0590 35 1 0.4557 -2.1830 -1.2680 36 1 1.9423 -2.6988 -2.1024 37 1 1.4186 0.9476 -2.2834 38 1 2.4607 -1.3535 -3.8022 39 1 3.4100 0.0929 -3.3836 40 1 2.9438 2.2314 -4.4281 41 1 2.0473 3.3984 -6.4005 42 1 -0.7442 2.8253 -10.1789 43 1 -0.2415 -0.0722 -7.4021 44 1 0.6675 -1.2337 -5.4320 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925622515.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:47 Heat of formation + Delta-G solvation = -34.003894 kcal Electronic energy + Delta-G solvation = -22693.515083 eV Core-core repulsion = 19416.603265 eV Total energy + Delta-G solvation = -3276.911818 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.98637 -40.53344 -38.66702 -36.12370 -34.31853 -32.99858 -32.18893 -31.84458 -30.01366 -27.98754 -27.05508 -25.61602 -23.64429 -23.47614 -23.02446 -22.04953 -20.26999 -19.95927 -18.76626 -17.25546 -17.19377 -16.95492 -16.15417 -15.95342 -15.73364 -15.66279 -15.64614 -15.43240 -15.09618 -14.81212 -14.24733 -14.02136 -13.89805 -13.44068 -13.03289 -12.95120 -12.90175 -12.81357 -12.76469 -12.40585 -12.30057 -12.19004 -12.04395 -11.93001 -11.88440 -11.51140 -11.28636 -11.17977 -10.76885 -9.85839 -9.55033 -9.15112 -9.00357 -8.94354 -6.25593 0.52309 0.59664 1.47880 1.61007 1.76800 2.34928 2.74646 3.05444 3.22697 3.33429 3.50442 3.76208 3.86748 3.98352 4.02663 4.08002 4.14767 4.26066 4.28295 4.39693 4.49285 4.53588 4.59332 4.64240 4.69238 4.75097 4.84143 4.98743 5.00078 5.04562 5.08106 5.18666 5.21445 5.22608 5.26432 5.30266 5.49506 5.52078 5.69457 5.74968 5.97181 6.04919 6.19000 6.28911 6.45001 6.49110 6.85600 7.62013 8.49621 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.035721 B = 0.002705 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.660050 B =10347.891083 C =10650.393067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.087 3.913 3 H 0.079 0.921 4 N -0.682 5.682 5 C 0.053 3.947 6 C -0.150 4.150 7 C -0.108 4.108 8 C 0.063 3.937 9 H 0.042 0.958 10 N -0.681 5.681 11 C 0.124 3.876 12 C -0.152 4.152 13 C -0.062 4.062 14 C -0.240 4.240 15 C 0.116 3.884 16 O -0.254 6.254 17 C -0.487 4.487 18 H 0.091 0.909 19 C -0.046 4.046 20 N -0.918 5.918 21 Si 1.148 2.852 22 H -0.264 1.264 23 H -0.259 1.259 24 H -0.273 1.273 25 C -0.206 4.206 26 C -0.047 4.047 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.346 0.654 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.342 0.658 38 H 0.080 0.920 39 H 0.042 0.958 40 H 0.139 0.861 41 H 0.116 0.884 42 H 0.260 0.740 43 H 0.112 0.888 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.765 -10.391 23.374 26.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.024 4.024 3 H 0.097 0.903 4 N -0.311 5.311 5 C -0.077 4.077 6 C -0.190 4.190 7 C -0.147 4.147 8 C -0.049 4.049 9 H 0.060 0.940 10 N -0.313 5.313 11 C -0.004 4.004 12 C -0.153 4.153 13 C -0.080 4.080 14 C -0.259 4.259 15 C 0.066 3.934 16 O -0.162 6.162 17 C -0.563 4.563 18 H 0.109 0.891 19 C -0.241 4.241 20 N -0.553 5.553 21 Si 0.963 3.037 22 H -0.189 1.189 23 H -0.183 1.183 24 H -0.198 1.198 25 C -0.225 4.225 26 C -0.065 4.065 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.164 0.836 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.161 0.839 38 H 0.098 0.902 39 H 0.060 0.940 40 H 0.157 0.843 41 H 0.134 0.866 42 H 0.068 0.932 43 H 0.130 0.870 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.622 -9.476 22.385 25.194 hybrid contribution 0.980 -1.171 0.009 1.527 sum 7.602 -10.647 22.394 25.936 Atomic orbital electron populations 1.21782 0.94093 1.02110 1.01481 1.21637 0.96485 0.97256 0.87009 0.90256 1.60718 1.15664 1.16428 1.38297 1.22101 1.00825 0.87316 0.97415 1.22233 1.01090 1.00360 0.95333 1.21581 1.01322 0.94213 0.97550 1.22271 0.96744 0.95474 0.90393 0.94009 1.60522 1.50366 1.16792 1.03592 1.20623 0.93075 0.99525 0.87168 1.19636 1.01976 0.94820 0.98907 1.20954 0.97871 0.94219 0.94967 1.21239 1.04026 1.01637 0.99019 1.19825 0.93239 0.92648 0.87667 1.83646 1.59133 1.31824 1.41549 1.22611 1.29968 0.92603 1.11089 0.89133 1.28403 0.96060 1.09144 0.90541 1.70686 1.29062 1.17501 1.38087 0.82541 0.75996 0.67706 0.77420 1.18928 1.18266 1.19794 1.20471 1.06931 0.92796 1.02323 1.20836 0.94423 0.99617 0.91672 0.92385 0.92679 0.92225 0.83592 0.90967 0.89651 0.90608 0.91799 0.91805 0.92764 0.83856 0.90208 0.93996 0.84317 0.86603 0.93168 0.86973 0.83881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 8.42 71.98 0.61 -1.74 16 2 C 0.09 1.33 3.07 44.94 0.14 1.47 16 3 H 0.08 1.23 8.13 -2.39 -0.02 1.21 16 4 N -0.68 -9.22 6.67 -491.69 -3.28 -12.50 16 5 C 0.05 0.63 6.26 86.33 0.54 1.17 16 6 C -0.15 -1.79 6.08 30.65 0.19 -1.61 16 7 C -0.11 -1.72 5.19 30.68 0.16 -1.56 16 8 C 0.06 1.01 2.33 44.96 0.10 1.12 16 9 H 0.04 0.67 7.80 -2.39 -0.02 0.66 16 10 N -0.68 -13.70 5.56 -495.31 -2.76 -16.46 16 11 C 0.12 2.74 5.61 85.56 0.48 3.22 16 12 C -0.15 -4.60 5.40 -19.84 -0.11 -4.70 16 13 C -0.06 -2.07 9.69 22.25 0.22 -1.85 16 14 C -0.24 -10.51 9.17 22.39 0.21 -10.30 16 15 C 0.12 5.81 6.65 22.58 0.15 5.97 16 16 O -0.25 -15.30 9.16 -22.76 -0.21 -15.51 16 17 C -0.49 -28.82 9.49 67.92 0.64 -28.18 16 18 H 0.09 4.99 5.20 -2.91 -0.02 4.98 16 19 C -0.05 -2.65 5.49 84.83 0.47 -2.18 16 20 N -0.92 -58.17 13.70 21.61 0.30 -57.88 16 21 Si 1.15 48.55 29.92 68.60 2.05 50.60 16 22 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 23 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 25 C -0.21 -8.79 9.99 22.39 0.22 -8.57 16 26 C -0.05 -1.58 9.69 22.25 0.22 -1.36 16 27 H 0.06 1.00 4.80 -2.39 -0.01 0.99 16 28 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.06 1.15 7.43 -2.39 -0.02 1.14 16 30 H 0.35 3.90 8.86 -89.70 -0.79 3.10 16 31 H 0.07 0.98 6.19 -2.38 -0.01 0.96 16 32 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.06 1.17 6.56 -2.39 -0.02 1.15 16 36 H 0.05 0.93 7.53 -2.39 -0.02 0.91 16 37 H 0.34 7.04 8.14 -89.70 -0.73 6.31 16 38 H 0.08 1.67 7.44 -2.39 -0.02 1.65 16 39 H 0.04 0.84 8.00 -2.38 -0.02 0.82 16 40 H 0.14 3.70 8.06 -2.91 -0.02 3.67 16 41 H 0.12 5.25 5.64 -2.91 -0.02 5.23 16 42 H 0.26 17.18 7.97 -92.71 -0.74 16.44 16 43 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 44 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -69.00 345.28 -0.14 -69.14 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: -0.48 Total: 31.72 kcal Atomic # 6 Polarization: -53.35 SS G_CDS: 4.23 Total: -49.12 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -5.74 Total: -86.84 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.21 Total: -15.51 kcal Atomic # 14 Polarization: 48.55 SS G_CDS: 2.05 Total: 50.60 kcal Total: -69.00 -0.14 -69.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925622515.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.139 kcal (2) G-P(sol) polarization free energy of solvation -69.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds