Wall clock time and date at job start Tue Mar 31 2020 07:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46273 * 2 1 4 4 N 1.46841 * 109.46405 * 240.02423 * 2 1 3 5 5 C 1.46846 * 111.19848 * 178.23991 * 4 2 1 6 6 C 1.53043 * 109.52109 * 61.74748 * 5 4 2 7 7 C 1.53120 * 109.27357 * 300.81955 * 6 5 4 8 8 C 1.53043 * 109.46183 * 119.97180 * 2 1 3 9 9 H 1.09003 * 109.49926 * 59.25330 * 8 2 1 10 10 N 1.46894 * 109.50543 * 299.14010 * 8 2 1 11 11 C 1.46901 * 111.00160 * 154.99844 * 10 8 2 12 12 C 1.50700 * 109.47202 * 180.02562 * 11 10 8 13 13 C 1.38302 * 119.93195 * 269.72775 * 12 11 10 14 14 C 1.38098 * 120.07178 * 179.72428 * 13 12 11 15 15 C 1.38880 * 119.92748 * 0.54504 * 14 13 12 16 16 O 1.35755 * 120.06810 * 179.74909 * 15 14 13 17 17 C 1.34829 * 117.00026 * 174.44509 * 16 15 14 18 18 H 1.07998 * 119.99826 * 5.05314 * 17 16 15 19 19 C 1.38653 * 120.00076 * 185.05607 * 17 16 15 20 20 N 1.31556 * 119.99719 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99811 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46646 * 90.00256 * 21 19 17 23 23 H 1.48504 * 109.47065 * 210.00126 * 21 19 17 24 24 H 1.48494 * 109.47471 * 330.00360 * 21 19 17 25 25 C 1.38879 * 119.86160 * 359.72997 * 15 14 13 26 26 C 1.38099 * 119.93345 * 359.97438 * 25 15 14 27 27 H 1.09001 * 109.47691 * 300.02704 * 1 2 3 28 28 H 1.09002 * 109.47141 * 60.02998 * 1 2 3 29 29 H 1.09010 * 109.47126 * 180.02562 * 1 2 3 30 30 H 1.00899 * 111.00566 * 302.34497 * 4 2 1 31 31 H 1.09001 * 109.46660 * 181.76145 * 5 4 2 32 32 H 1.08995 * 109.46382 * 301.73878 * 5 4 2 33 33 H 1.08997 * 109.50122 * 60.76391 * 6 5 4 34 34 H 1.09003 * 109.50277 * 180.84186 * 6 5 4 35 35 H 1.09000 * 109.52163 * 297.74713 * 7 6 5 36 36 H 1.09007 * 109.51510 * 177.56220 * 7 6 5 37 37 H 1.00905 * 111.00002 * 31.04725 * 10 8 2 38 38 H 1.08997 * 109.46905 * 299.99792 * 11 10 8 39 39 H 1.08996 * 109.46942 * 60.00110 * 11 10 8 40 40 H 1.08002 * 119.96490 * 0.02562 * 13 12 11 41 41 H 1.07997 * 120.03562 * 180.27185 * 14 13 12 42 42 H 0.97005 * 119.99573 * 179.97438 * 20 19 17 43 43 H 1.08008 * 120.03268 * 179.97438 * 25 15 14 44 44 H 1.07999 * 119.96465 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0193 -0.6917 -1.1993 5 6 3.4865 -0.6776 -1.2590 6 6 4.0548 -1.4188 -0.0466 7 6 3.5708 -0.7360 1.2357 8 6 2.0399 -0.7209 1.2500 9 1 1.6658 -1.7447 1.2577 10 7 1.5676 -0.0165 2.4494 11 6 1.5019 -0.9250 3.6019 12 6 1.0139 -0.1687 4.8106 13 6 1.9219 0.4502 5.6503 14 6 1.4775 1.1488 6.7556 15 6 0.1179 1.2200 7.0297 16 8 -0.3217 1.9017 8.1183 17 6 -1.6562 2.0291 8.2629 18 1 -2.3238 1.5298 7.5765 19 6 -2.1713 2.8013 9.2929 20 7 -3.4733 2.9260 9.4337 21 14 -1.0164 3.6644 10.4806 22 1 -0.6929 5.0175 9.9611 23 1 -1.6720 3.7872 11.8074 24 1 0.2338 2.8749 10.6174 25 6 -0.7910 0.5926 6.1877 26 6 -0.3408 -0.0993 5.0806 27 1 -0.3634 0.5142 0.8897 28 1 -0.3633 0.5134 -0.8903 29 1 -0.3634 -1.0278 0.0005 30 1 1.6647 -1.6354 -1.2426 31 1 3.8176 -1.1698 -2.1735 32 1 3.8403 0.3533 -1.2529 33 1 3.7125 -2.4536 -0.0594 34 1 5.1439 -1.3953 -0.0834 35 1 3.9456 0.2871 1.2673 36 1 3.9379 -1.2863 2.1021 37 1 0.6740 0.4217 2.2830 38 1 0.8137 -1.7412 3.3823 39 1 2.4938 -1.3299 3.8023 40 1 2.9793 0.3912 5.4388 41 1 2.1868 1.6356 7.4085 42 1 -3.8337 3.4659 10.1545 43 1 -1.8490 0.6458 6.3985 44 1 -1.0472 -0.5871 4.4253 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925622516.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:55 Heat of formation + Delta-G solvation = -9.124077 kcal Electronic energy + Delta-G solvation = -22646.462133 eV Core-core repulsion = 19370.629185 eV Total energy + Delta-G solvation = -3275.832948 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -39.75788 -39.13071 -37.05313 -35.05750 -32.94189 -32.42210 -31.10994 -30.24840 -28.79579 -26.98278 -25.61055 -24.25023 -22.54990 -22.06144 -21.70311 -20.53573 -20.29995 -17.90490 -17.33331 -16.19854 -15.89711 -15.48497 -15.10196 -14.79691 -14.70373 -14.42390 -14.02203 -13.79333 -13.60376 -13.30111 -13.21222 -12.77364 -12.69327 -12.57806 -12.26057 -12.22240 -12.11845 -11.81508 -11.37591 -11.31352 -11.12323 -11.02965 -10.95220 -10.76137 -10.66395 -10.54949 -10.15950 -9.39872 -8.90015 -8.73976 -8.34707 -8.25090 -7.33195 -6.42982 -4.09638 2.12417 2.17110 3.21330 3.25221 3.39751 3.86149 4.14899 4.22821 4.47791 4.55324 4.63133 4.69297 4.85636 4.90772 5.01912 5.09685 5.10461 5.21752 5.27415 5.32292 5.38976 5.51641 5.53188 5.63037 5.65865 5.71539 5.74313 5.82486 5.85281 5.92613 6.00724 6.08790 6.12191 6.33396 6.56732 6.66743 6.78061 6.98550 7.06593 7.11000 7.24285 7.27558 7.43888 7.60619 7.78721 8.02678 8.92395 9.54909 10.64679 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.033931 B = 0.002805 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.005090 B = 9979.983644 C =10408.142814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.082 3.918 3 H 0.089 0.911 4 N -0.678 5.678 5 C 0.056 3.944 6 C -0.158 4.158 7 C -0.108 4.108 8 C 0.057 3.943 9 H 0.039 0.961 10 N -0.679 5.679 11 C 0.118 3.882 12 C -0.176 4.176 13 C -0.054 4.054 14 C -0.194 4.194 15 C 0.162 3.838 16 O -0.217 6.217 17 C -0.390 4.390 18 H 0.106 0.894 19 C 0.063 3.937 20 N -0.880 5.880 21 Si 0.906 3.094 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.260 1.260 25 C -0.221 4.221 26 C -0.068 4.068 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.338 0.662 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.344 0.656 38 H 0.027 0.973 39 H 0.069 0.931 40 H 0.112 0.888 41 H 0.116 0.884 42 H 0.279 0.721 43 H 0.132 0.868 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.857 -8.412 -18.253 23.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 H 0.107 0.893 4 N -0.307 5.307 5 C -0.073 4.073 6 C -0.198 4.198 7 C -0.147 4.147 8 C -0.055 4.055 9 H 0.057 0.943 10 N -0.313 5.313 11 C -0.010 4.010 12 C -0.178 4.178 13 C -0.073 4.073 14 C -0.213 4.213 15 C 0.109 3.891 16 O -0.122 6.122 17 C -0.465 4.465 18 H 0.123 0.877 19 C -0.140 4.140 20 N -0.518 5.518 21 Si 0.731 3.269 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.184 1.184 25 C -0.240 4.240 26 C -0.086 4.086 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.155 0.845 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.165 0.835 38 H 0.045 0.955 39 H 0.087 0.913 40 H 0.131 0.869 41 H 0.134 0.866 42 H 0.090 0.910 43 H 0.150 0.850 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 12.314 -7.398 -18.191 23.179 hybrid contribution -0.360 -0.858 1.115 1.452 sum 11.955 -8.256 -17.076 22.420 Atomic orbital electron populations 1.21887 0.94379 1.02009 1.02657 1.21718 0.95186 0.98980 0.86982 0.89258 1.60770 1.08782 1.22248 1.38916 1.22029 0.87377 1.01019 0.96922 1.22301 1.01351 0.99728 0.96387 1.21574 0.94754 1.01522 0.96807 1.22281 0.95887 0.96152 0.91166 0.94342 1.60594 1.34971 1.32536 1.03180 1.20664 0.99667 0.92295 0.88403 1.19182 0.93295 1.06737 0.98539 1.20458 0.98238 0.95401 0.93184 1.20222 0.93021 1.07158 1.00903 1.19141 0.92625 0.90908 0.86397 1.83576 1.26196 1.64977 1.37480 1.20766 0.77868 1.31771 1.16125 0.87652 1.24469 0.95908 0.96249 0.97374 1.69649 1.10603 1.39102 1.32416 0.86177 0.81101 0.80191 0.79417 1.19851 1.20785 1.18362 1.21234 1.00713 1.04269 0.97815 1.20638 0.94338 0.97447 0.96225 0.91595 0.91382 0.92894 0.84488 0.90815 0.90757 0.92297 0.91322 0.91039 0.92055 0.83487 0.95496 0.91260 0.86950 0.86575 0.91042 0.85017 0.87696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.24 37.16 0.34 -0.97 16 2 C 0.08 0.74 2.68 -67.72 -0.18 0.56 16 3 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 4 N -0.68 -5.55 6.50 -106.76 -0.69 -6.24 16 5 C 0.06 0.41 6.55 -3.83 -0.03 0.39 16 6 C -0.16 -1.17 6.08 -26.65 -0.16 -1.33 16 7 C -0.11 -1.01 5.49 -26.61 -0.15 -1.16 16 8 C 0.06 0.56 2.11 -67.64 -0.14 0.41 16 9 H 0.04 0.39 7.80 -51.93 -0.41 -0.01 16 10 N -0.68 -8.07 6.30 -107.91 -0.68 -8.75 16 11 C 0.12 1.53 5.61 -4.98 -0.03 1.50 16 12 C -0.18 -2.86 5.40 -104.57 -0.56 -3.43 16 13 C -0.05 -0.92 9.69 -39.61 -0.38 -1.31 16 14 C -0.19 -3.85 9.99 -39.40 -0.39 -4.24 16 15 C 0.16 3.73 6.65 -39.11 -0.26 3.47 16 16 O -0.22 -5.75 8.59 0.04 0.00 -5.75 16 17 C -0.39 -10.98 9.95 30.89 0.31 -10.67 16 18 H 0.11 3.03 5.44 -52.49 -0.29 2.74 16 19 C 0.06 1.77 5.49 -17.52 -0.10 1.68 16 20 N -0.88 -25.41 13.96 55.48 0.77 -24.64 16 21 Si 0.91 21.70 28.62 -169.99 -4.86 16.83 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.26 -6.24 7.11 56.52 0.40 -5.84 16 25 C -0.22 -4.72 9.17 -39.40 -0.36 -5.08 16 26 C -0.07 -1.20 9.69 -39.61 -0.38 -1.58 16 27 H 0.07 0.60 6.25 -51.93 -0.32 0.27 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 30 H 0.34 2.49 8.79 -39.29 -0.35 2.14 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.61 7.54 -51.93 -0.39 0.22 16 37 H 0.34 4.15 6.21 -39.29 -0.24 3.90 16 38 H 0.03 0.34 8.00 -51.93 -0.42 -0.08 16 39 H 0.07 0.87 7.44 -51.93 -0.39 0.48 16 40 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 41 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 42 H 0.28 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.13 2.97 5.64 -52.48 -0.30 2.67 16 44 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 349.81 15.07 5.27 5.27 Total: -1.00 -28.65 349.81 -9.55 -38.20 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -6.88 Total: 6.83 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: -2.48 Total: -21.76 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: -0.60 Total: -39.63 kcal Atomic # 8 Polarization: -5.75 SS G_CDS: 0.00 Total: -5.75 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.86 Total: 16.83 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.65 -9.55 -38.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925622516.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.073 kcal (2) G-P(sol) polarization free energy of solvation -28.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds