Wall clock time and date at job start Tue Mar 31 2020 07:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46273 * 2 1 4 4 N 1.46841 * 109.46405 * 240.02423 * 2 1 3 5 5 C 1.46846 * 111.19848 * 178.23991 * 4 2 1 6 6 C 1.53043 * 109.52109 * 61.74748 * 5 4 2 7 7 C 1.53120 * 109.27357 * 300.81955 * 6 5 4 8 8 C 1.53043 * 109.46183 * 119.97180 * 2 1 3 9 9 H 1.09003 * 109.49926 * 59.25330 * 8 2 1 10 10 N 1.46894 * 109.50543 * 299.14010 * 8 2 1 11 11 C 1.46901 * 111.00160 * 154.99844 * 10 8 2 12 12 C 1.50700 * 109.47202 * 180.02562 * 11 10 8 13 13 C 1.38302 * 119.93195 * 269.72775 * 12 11 10 14 14 C 1.38098 * 120.07178 * 179.72428 * 13 12 11 15 15 C 1.38880 * 119.92748 * 0.54504 * 14 13 12 16 16 O 1.35755 * 120.06810 * 179.74909 * 15 14 13 17 17 C 1.34829 * 117.00026 * 174.44509 * 16 15 14 18 18 H 1.07998 * 119.99826 * 5.05314 * 17 16 15 19 19 C 1.38653 * 120.00076 * 185.05607 * 17 16 15 20 20 N 1.31556 * 119.99719 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99811 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46646 * 90.00256 * 21 19 17 23 23 H 1.48504 * 109.47065 * 210.00126 * 21 19 17 24 24 H 1.48494 * 109.47471 * 330.00360 * 21 19 17 25 25 C 1.38879 * 119.86160 * 359.72997 * 15 14 13 26 26 C 1.38099 * 119.93345 * 359.97438 * 25 15 14 27 27 H 1.09001 * 109.47691 * 300.02704 * 1 2 3 28 28 H 1.09002 * 109.47141 * 60.02998 * 1 2 3 29 29 H 1.09010 * 109.47126 * 180.02562 * 1 2 3 30 30 H 1.00899 * 111.00566 * 302.34497 * 4 2 1 31 31 H 1.09001 * 109.46660 * 181.76145 * 5 4 2 32 32 H 1.08995 * 109.46382 * 301.73878 * 5 4 2 33 33 H 1.08997 * 109.50122 * 60.76391 * 6 5 4 34 34 H 1.09003 * 109.50277 * 180.84186 * 6 5 4 35 35 H 1.09000 * 109.52163 * 297.74713 * 7 6 5 36 36 H 1.09007 * 109.51510 * 177.56220 * 7 6 5 37 37 H 1.00905 * 111.00002 * 31.04725 * 10 8 2 38 38 H 1.08997 * 109.46905 * 299.99792 * 11 10 8 39 39 H 1.08996 * 109.46942 * 60.00110 * 11 10 8 40 40 H 1.08002 * 119.96490 * 0.02562 * 13 12 11 41 41 H 1.07997 * 120.03562 * 180.27185 * 14 13 12 42 42 H 0.97005 * 119.99573 * 179.97438 * 20 19 17 43 43 H 1.08008 * 120.03268 * 179.97438 * 25 15 14 44 44 H 1.07999 * 119.96465 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0193 -0.6917 -1.1993 5 6 3.4865 -0.6776 -1.2590 6 6 4.0548 -1.4188 -0.0466 7 6 3.5708 -0.7360 1.2357 8 6 2.0399 -0.7209 1.2500 9 1 1.6658 -1.7447 1.2577 10 7 1.5676 -0.0165 2.4494 11 6 1.5019 -0.9250 3.6019 12 6 1.0139 -0.1687 4.8106 13 6 1.9219 0.4502 5.6503 14 6 1.4775 1.1488 6.7556 15 6 0.1179 1.2200 7.0297 16 8 -0.3217 1.9017 8.1183 17 6 -1.6562 2.0291 8.2629 18 1 -2.3238 1.5298 7.5765 19 6 -2.1713 2.8013 9.2929 20 7 -3.4733 2.9260 9.4337 21 14 -1.0164 3.6644 10.4806 22 1 -0.6929 5.0175 9.9611 23 1 -1.6720 3.7872 11.8074 24 1 0.2338 2.8749 10.6174 25 6 -0.7910 0.5926 6.1877 26 6 -0.3408 -0.0993 5.0806 27 1 -0.3634 0.5142 0.8897 28 1 -0.3633 0.5134 -0.8903 29 1 -0.3634 -1.0278 0.0005 30 1 1.6647 -1.6354 -1.2426 31 1 3.8176 -1.1698 -2.1735 32 1 3.8403 0.3533 -1.2529 33 1 3.7125 -2.4536 -0.0594 34 1 5.1439 -1.3953 -0.0834 35 1 3.9456 0.2871 1.2673 36 1 3.9379 -1.2863 2.1021 37 1 0.6740 0.4217 2.2830 38 1 0.8137 -1.7412 3.3823 39 1 2.4938 -1.3299 3.8023 40 1 2.9793 0.3912 5.4388 41 1 2.1868 1.6356 7.4085 42 1 -3.8337 3.4659 10.1545 43 1 -1.8490 0.6458 6.3985 44 1 -1.0472 -0.5871 4.4253 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925622516.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:55 Heat of formation + Delta-G solvation = -28.148915 kcal Electronic energy + Delta-G solvation = -22647.287112 eV Core-core repulsion = 19370.629185 eV Total energy + Delta-G solvation = -3276.657927 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.96154 -40.36068 -38.61362 -36.08652 -34.46038 -33.61556 -32.23966 -31.79648 -29.93625 -27.84552 -27.28785 -25.53030 -23.69147 -23.38047 -22.37363 -21.84429 -21.19404 -19.82652 -19.12098 -17.27387 -16.66003 -16.60256 -16.25692 -16.14210 -15.71784 -15.59862 -15.51013 -15.38198 -15.07529 -14.44892 -14.30076 -14.11121 -14.01141 -13.88180 -13.41627 -13.28825 -13.01602 -12.92691 -12.67429 -12.46662 -12.45727 -12.18225 -12.02517 -11.94114 -11.83760 -11.64088 -11.41602 -11.27801 -10.90998 -9.81025 -9.54493 -9.15105 -8.98447 -8.50841 -6.23352 0.56829 0.61515 1.30917 1.35023 1.51491 2.27553 2.71673 2.98676 3.13821 3.24878 3.47799 3.76363 3.84300 4.02302 4.05656 4.07810 4.18923 4.25286 4.32810 4.40984 4.44618 4.54610 4.58145 4.66947 4.74017 4.79389 4.83331 4.92336 4.98939 5.04756 5.06462 5.17550 5.21192 5.25602 5.31405 5.36119 5.38367 5.57678 5.75354 5.80455 5.90206 5.96644 6.19008 6.26258 6.46395 6.48801 6.83692 7.58393 8.60834 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.033931 B = 0.002805 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.005090 B = 9979.983644 C =10408.142814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.088 3.912 3 H 0.074 0.926 4 N -0.682 5.682 5 C 0.056 3.944 6 C -0.151 4.151 7 C -0.108 4.108 8 C 0.062 3.938 9 H 0.043 0.957 10 N -0.686 5.686 11 C 0.123 3.877 12 C -0.149 4.149 13 C -0.049 4.049 14 C -0.193 4.193 15 C 0.120 3.880 16 O -0.246 6.246 17 C -0.399 4.399 18 H 0.081 0.919 19 C 0.010 3.990 20 N -0.924 5.924 21 Si 0.971 3.029 22 H -0.266 1.266 23 H -0.267 1.267 24 H -0.263 1.263 25 C -0.236 4.236 26 C -0.067 4.067 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.344 0.656 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.343 0.657 38 H 0.040 0.960 39 H 0.083 0.917 40 H 0.148 0.852 41 H 0.127 0.873 42 H 0.285 0.715 43 H 0.107 0.893 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.446 -9.660 -20.150 26.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.023 4.023 3 H 0.093 0.907 4 N -0.311 5.311 5 C -0.073 4.073 6 C -0.190 4.190 7 C -0.146 4.146 8 C -0.049 4.049 9 H 0.061 0.939 10 N -0.320 5.320 11 C -0.006 4.006 12 C -0.150 4.150 13 C -0.068 4.068 14 C -0.212 4.212 15 C 0.071 3.929 16 O -0.153 6.153 17 C -0.476 4.476 18 H 0.098 0.902 19 C -0.189 4.189 20 N -0.565 5.565 21 Si 0.793 3.207 22 H -0.191 1.191 23 H -0.192 1.192 24 H -0.187 1.187 25 C -0.256 4.256 26 C -0.085 4.085 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.163 0.837 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.164 0.836 38 H 0.058 0.942 39 H 0.101 0.899 40 H 0.166 0.834 41 H 0.145 0.855 42 H 0.094 0.906 43 H 0.125 0.875 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 14.928 -8.674 -20.133 26.522 hybrid contribution -1.013 -0.658 1.371 1.827 sum 13.916 -9.332 -18.762 25.154 Atomic orbital electron populations 1.21853 0.94123 1.02312 1.02358 1.21594 0.95323 0.98241 0.87126 0.90729 1.60753 1.09442 1.22716 1.38207 1.22061 0.86773 1.00846 0.97628 1.22242 1.01901 0.99672 0.95214 1.21565 0.94250 1.01002 0.97775 1.22290 0.96194 0.96061 0.90365 0.93928 1.60561 1.35015 1.32655 1.03775 1.20648 1.00599 0.92125 0.87200 1.19652 0.92419 1.04162 0.98815 1.20886 1.00215 0.93900 0.91778 1.20524 0.91711 1.07149 1.01846 1.19681 0.94322 0.92094 0.86769 1.83518 1.24646 1.67437 1.39729 1.20708 0.78851 1.31930 1.16070 0.90152 1.25281 0.97450 0.97065 0.99066 1.69731 1.12122 1.40813 1.33788 0.85217 0.78782 0.78973 0.77738 1.19088 1.19155 1.18737 1.21248 0.99525 1.05496 0.99302 1.20913 0.95874 0.96587 0.95132 0.92159 0.91444 0.92246 0.83731 0.89382 0.91467 0.91716 0.90406 0.92230 0.92351 0.83638 0.94225 0.89856 0.83436 0.85517 0.90567 0.87480 0.84978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.24 71.98 0.67 -1.61 16 2 C 0.09 1.40 2.68 44.94 0.12 1.52 16 3 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 4 N -0.68 -9.45 6.50 -491.68 -3.20 -12.65 16 5 C 0.06 0.67 6.55 86.33 0.57 1.24 16 6 C -0.15 -1.76 6.08 30.65 0.19 -1.57 16 7 C -0.11 -1.70 5.49 30.67 0.17 -1.53 16 8 C 0.06 1.03 2.11 44.97 0.09 1.13 16 9 H 0.04 0.71 7.80 -2.39 -0.02 0.69 16 10 N -0.69 -14.17 6.30 -495.33 -3.12 -17.29 16 11 C 0.12 2.69 5.61 85.56 0.48 3.17 16 12 C -0.15 -4.40 5.40 -19.83 -0.11 -4.50 16 13 C -0.05 -1.53 9.69 22.25 0.22 -1.32 16 14 C -0.19 -7.46 9.99 22.39 0.22 -7.24 16 15 C 0.12 5.68 6.65 22.58 0.15 5.83 16 16 O -0.25 -13.50 8.59 -22.79 -0.20 -13.70 16 17 C -0.40 -23.75 9.95 67.92 0.68 -23.08 16 18 H 0.08 5.00 5.44 -2.91 -0.02 4.98 16 19 C 0.01 0.56 5.49 84.83 0.47 1.03 16 20 N -0.92 -55.56 13.96 21.61 0.30 -55.26 16 21 Si 0.97 45.83 28.62 68.60 1.96 47.79 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.26 -12.40 7.11 99.48 0.71 -11.69 16 25 C -0.24 -10.39 9.17 22.39 0.21 -10.18 16 26 C -0.07 -2.26 9.69 22.25 0.22 -2.04 16 27 H 0.06 0.99 6.25 -2.39 -0.01 0.97 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.34 4.07 8.79 -89.69 -0.79 3.28 16 31 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.06 0.96 7.54 -2.38 -0.02 0.94 16 37 H 0.34 7.36 6.21 -89.69 -0.56 6.80 16 38 H 0.04 0.81 8.00 -2.39 -0.02 0.79 16 39 H 0.08 1.68 7.44 -2.39 -0.02 1.66 16 40 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 41 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 42 H 0.28 15.69 8.31 -92.70 -0.77 14.92 16 43 H 0.11 5.19 5.64 -2.91 -0.02 5.17 16 44 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -64.58 349.81 -0.26 -64.85 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: -0.34 Total: 25.41 kcal Atomic # 6 Polarization: -43.47 SS G_CDS: 4.33 Total: -39.15 kcal Atomic # 7 Polarization: -79.19 SS G_CDS: -6.02 Total: -85.20 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.20 Total: -13.70 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.96 Total: 47.79 kcal Total: -64.58 -0.26 -64.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925622516.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.697 kcal (2) G-P(sol) polarization free energy of solvation -64.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds