Wall clock time and date at job start Tue Mar 31 2020 07:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.78437 * 2 1 4 4 C 1.54325 * 110.72304 * 236.75391 * 2 1 3 5 5 N 1.47018 * 107.40412 * 219.52316 * 4 2 1 6 6 C 1.34777 * 125.64981 * 178.82520 * 5 4 2 7 7 O 1.21615 * 120.00149 * 180.02562 * 6 5 4 8 8 C 1.43198 * 119.99918 * 0.02761 * 6 5 4 9 9 C 5.20762 * 110.98762 * 235.44607 * 2 1 3 10 10 C 6.36752 * 103.90815 * 241.32028 * 2 1 3 11 11 C 1.53004 * 117.49815 * 69.15074 * 10 9 8 12 12 C 1.53007 * 117.50174 * 0.52668 * 10 9 8 13 13 C 1.47426 * 108.70517 * 358.86539 * 5 4 2 14 14 C 1.54914 * 104.82992 * 24.12623 * 13 5 4 15 15 H 1.09000 * 111.00339 * 81.07133 * 14 13 5 16 16 C 1.53000 * 111.00205 * 204.91932 * 14 13 5 17 17 C 1.53002 * 109.46919 * 293.54638 * 16 14 13 18 18 N 1.46505 * 109.47124 * 180.02562 * 17 16 14 19 19 C 1.36938 * 120.00212 * 180.02562 * 18 17 16 20 20 H 1.07995 * 119.99957 * 359.97438 * 19 18 17 21 21 C 1.38808 * 119.99952 * 180.02562 * 19 18 17 22 22 N 1.31616 * 119.99987 * 179.97438 * 21 19 18 23 23 Si 1.86807 * 120.00160 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.46797 * 89.99891 * 23 21 19 25 25 H 1.48496 * 109.46947 * 209.99818 * 23 21 19 26 26 H 1.48496 * 109.46878 * 330.00156 * 23 21 19 27 27 H 1.08999 * 109.47083 * 181.78943 * 1 2 3 28 28 H 1.09002 * 109.47293 * 301.78952 * 1 2 3 29 29 H 1.09000 * 109.47062 * 61.79046 * 1 2 3 30 30 H 1.09002 * 109.88192 * 100.02756 * 4 2 1 31 31 H 1.09000 * 109.88128 * 339.01609 * 4 2 1 32 32 H 1.08995 * 115.55119 * 214.85398 * 10 9 8 33 33 H 1.08995 * 117.49657 * 359.97438 * 11 10 9 34 34 H 1.09003 * 117.50101 * 145.02389 * 11 10 9 35 35 H 1.08994 * 117.49929 * 214.98096 * 12 10 9 36 36 H 1.09000 * 117.49285 * 359.97438 * 12 10 9 37 37 H 1.08999 * 110.36956 * 142.96999 * 13 5 4 38 38 H 1.09001 * 110.36709 * 265.18192 * 13 5 4 39 39 H 1.08997 * 109.47218 * 53.54461 * 16 14 13 40 40 H 1.08997 * 109.47242 * 173.54932 * 16 14 13 41 41 H 1.09005 * 109.47314 * 299.99812 * 17 16 14 42 42 H 1.08997 * 109.47624 * 60.00359 * 17 16 14 43 43 H 0.97005 * 119.99963 * 0.02562 * 18 17 16 44 44 H 0.97004 * 120.00274 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7913 -1.2072 5 7 3.2438 -1.5535 -0.7414 6 6 3.9877 -2.3885 -1.4937 7 8 4.9356 -2.9696 -1.0008 8 6 3.6621 -2.5914 -2.8733 9 6 3.3951 -2.7577 -4.0044 10 6 3.0605 -2.9663 -5.4226 11 6 3.6815 -2.0101 -6.4430 12 6 2.1923 -1.9083 -6.1066 13 6 3.4656 -1.2541 0.6849 14 6 2.0831 -0.7972 1.2139 15 1 1.4480 -1.6542 1.4382 16 6 2.2359 0.1051 2.4400 17 6 2.8103 -0.7071 3.6025 18 7 2.9561 0.1567 4.7767 19 6 3.4552 -0.3544 5.9450 20 1 3.7410 -1.3943 6.0009 21 6 3.5928 0.4640 7.0577 22 7 4.0721 -0.0273 8.1808 23 14 3.0964 2.2623 6.9617 24 1 1.6683 2.4026 7.3438 25 1 3.9379 3.0584 7.8909 26 1 3.2883 2.7554 5.5742 27 1 -0.3633 -1.0272 0.0321 28 1 -0.3634 0.5414 0.8735 29 1 -0.3633 0.4858 -0.9056 30 1 2.3741 -0.1026 -1.9977 31 1 1.3121 -1.4741 -1.5791 32 1 2.9209 -4.0041 -5.7249 33 1 4.3374 -1.2265 -6.0640 34 1 3.9505 -2.4189 -7.4169 35 1 1.4818 -2.2501 -6.8592 36 1 1.8686 -1.0580 -5.5063 37 1 3.7975 -2.1479 1.2131 38 1 4.1987 -0.4550 0.7952 39 1 2.9103 0.9281 2.2037 40 1 1.2612 0.5034 2.7218 41 1 2.1359 -1.5302 3.8389 42 1 3.7850 -1.1054 3.3208 43 1 2.6990 1.0907 4.7267 44 1 4.1679 0.5444 8.9585 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104172658.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:09 Heat of formation + Delta-G solvation = 27.258818 kcal Electronic energy + Delta-G solvation = -22084.286324 eV Core-core repulsion = 18810.031057 eV Total energy + Delta-G solvation = -3274.255268 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.38131 -39.28844 -38.50627 -37.05688 -34.83822 -33.85360 -33.49460 -32.17312 -29.13861 -27.50741 -26.41865 -25.03575 -23.81177 -23.29180 -22.62108 -21.61470 -21.18345 -19.64491 -19.19571 -17.73520 -17.56536 -16.80740 -16.56711 -16.23593 -15.83613 -15.74404 -15.43108 -14.84415 -14.64776 -14.37588 -14.14908 -13.91806 -13.58960 -13.46365 -13.34761 -13.14394 -12.94499 -12.66813 -12.56222 -12.41709 -12.34088 -12.32417 -12.05979 -11.84774 -11.71339 -11.66098 -11.56432 -11.26149 -11.12971 -10.96746 -10.73987 -9.88846 -9.31240 -8.03653 -5.38286 0.33131 1.03798 1.37546 1.43068 1.50489 1.74868 2.26716 2.48672 2.83747 3.03998 3.27185 3.36912 3.41625 3.60812 3.81170 3.89396 3.96534 4.02733 4.16963 4.23064 4.38782 4.39653 4.45079 4.54161 4.59066 4.61487 4.75467 4.77326 4.82453 4.87652 4.95724 4.99576 5.06065 5.09037 5.13281 5.21974 5.25444 5.32320 5.39559 5.50352 5.74197 6.07538 6.20207 6.21337 6.78543 7.07193 7.82486 8.03601 9.18057 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.029219 B = 0.002652 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.047654 B =10554.853308 C =11155.581450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.088 4.088 3 H 0.100 0.900 4 C 0.103 3.897 5 N -0.604 5.604 6 C 0.640 3.360 7 O -0.577 6.577 8 C -0.264 4.264 9 C -0.018 4.018 10 C -0.091 4.091 11 C -0.155 4.155 12 C -0.144 4.144 13 C 0.106 3.894 14 C -0.081 4.081 15 H 0.090 0.910 16 C -0.102 4.102 17 C 0.149 3.851 18 N -0.759 5.759 19 C -0.241 4.241 20 H 0.049 0.951 21 C -0.070 4.070 22 N -0.986 5.986 23 Si 0.964 3.036 24 H -0.274 1.274 25 H -0.296 1.296 26 H -0.247 1.247 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.156 0.844 33 H 0.091 0.909 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.099 0.901 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.022 0.978 42 H 0.016 0.984 43 H 0.369 0.631 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.893 1.468 -34.842 36.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.107 4.107 3 H 0.118 0.882 4 C -0.019 4.019 5 N -0.335 5.335 6 C 0.430 3.570 7 O -0.459 6.459 8 C -0.267 4.267 9 C -0.020 4.020 10 C -0.108 4.108 11 C -0.192 4.192 12 C -0.180 4.180 13 C -0.016 4.016 14 C -0.101 4.101 15 H 0.108 0.892 16 C -0.140 4.140 17 C 0.023 3.977 18 N -0.405 5.405 19 C -0.372 4.372 20 H 0.068 0.932 21 C -0.261 4.261 22 N -0.636 5.636 23 Si 0.790 3.210 24 H -0.200 1.200 25 H -0.223 1.223 26 H -0.171 1.171 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.173 0.827 33 H 0.110 0.890 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.118 0.882 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.040 0.960 42 H 0.034 0.966 43 H 0.202 0.798 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.283 0.964 -34.495 36.008 hybrid contribution 0.515 0.408 1.116 1.295 sum -9.768 1.371 -33.379 34.806 Atomic orbital electron populations 1.21743 0.91833 1.02655 1.03313 1.22322 0.97744 0.99358 0.91256 0.88208 1.22410 0.86484 0.94917 0.98053 1.48360 1.30493 1.43094 1.11566 1.14539 0.81331 0.78577 0.82506 1.90843 1.30650 1.50538 1.73837 1.20275 1.06543 1.06593 0.93244 1.22103 0.93809 0.93421 0.92689 1.19315 1.09614 1.00092 0.81796 1.23241 0.96760 1.00065 0.99088 1.23261 0.94219 0.98584 1.01964 1.22460 0.98960 1.00761 0.79394 1.22362 0.94326 0.98975 0.94420 0.89181 1.21582 1.02322 0.97806 0.92316 1.20858 0.97373 0.93328 0.86149 1.42700 1.78579 1.09753 1.09437 1.19041 1.33681 0.95328 0.89107 0.93245 1.25657 1.01822 1.03490 0.95151 1.69912 1.53501 1.37416 1.02812 0.85278 0.77878 0.79417 0.78415 1.19961 1.22304 1.17109 0.92334 0.91557 0.90456 0.89802 0.89888 0.82669 0.89037 0.85128 0.84919 0.88238 0.92087 0.90868 0.90861 0.89588 0.96035 0.96599 0.79784 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.14 71.98 0.66 -0.89 16 2 C -0.09 -1.30 3.03 -9.52 -0.03 -1.33 16 3 H 0.10 1.33 8.04 -2.39 -0.02 1.31 16 4 C 0.10 1.68 6.04 86.73 0.52 2.20 16 5 N -0.60 -15.25 3.33 -820.72 -2.73 -17.98 16 6 C 0.64 19.80 7.69 85.49 0.66 20.46 16 7 O -0.58 -23.10 17.34 -4.08 -0.07 -23.17 16 8 C -0.26 -6.66 12.78 30.01 0.38 -6.28 16 9 C -0.02 -0.34 13.47 31.12 0.42 0.08 16 10 C -0.09 -0.89 6.22 -12.60 -0.08 -0.96 16 11 C -0.15 -0.99 10.21 30.60 0.31 -0.68 16 12 C -0.14 -0.72 10.21 30.60 0.31 -0.41 16 13 C 0.11 2.85 5.57 86.86 0.48 3.33 16 14 C -0.08 -1.75 2.53 -9.31 -0.02 -1.77 16 15 H 0.09 1.96 8.04 -2.39 -0.02 1.94 16 16 C -0.10 -2.65 4.85 30.59 0.15 -2.50 16 17 C 0.15 5.67 6.11 86.38 0.53 6.20 16 18 N -0.76 -36.07 5.41 -343.44 -1.86 -37.92 16 19 C -0.24 -14.26 10.47 84.03 0.88 -13.38 16 20 H 0.05 3.25 8.06 -2.91 -0.02 3.23 16 21 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 22 N -0.99 -64.87 13.97 21.65 0.30 -64.57 16 23 Si 0.96 45.66 27.74 68.60 1.90 47.57 16 24 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 25 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 26 H -0.25 -10.34 6.52 99.48 0.65 -9.69 16 27 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.08 1.18 7.82 -2.39 -0.02 1.16 16 32 H 0.16 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.13 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.13 0.07 8.14 -2.39 -0.02 0.05 16 36 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.06 1.94 7.96 -2.39 -0.02 1.92 16 38 H 0.07 2.00 8.01 -2.39 -0.02 1.98 16 39 H 0.07 1.83 8.10 -2.39 -0.02 1.81 16 40 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.02 0.65 7.46 -2.39 -0.02 0.63 16 43 H 0.37 16.19 5.53 -92.70 -0.51 15.67 16 44 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 Total: -1.00 -80.86 369.20 3.60 -77.26 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 0.41 Total: 18.51 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: 5.64 Total: 0.30 kcal Atomic # 7 Polarization: -116.18 SS G_CDS: -4.28 Total: -120.47 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.07 Total: -23.17 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.90 Total: 47.57 kcal Total: -80.86 3.60 -77.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104172658.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.518 kcal (2) G-P(sol) polarization free energy of solvation -80.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds