Wall clock time and date at job start Tue Mar 31 2020 07:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.48956 * 2 1 4 4 C 1.53092 * 109.47825 * 239.96725 * 2 1 3 5 5 C 1.53176 * 109.16138 * 182.41062 * 4 2 1 6 6 H 1.09009 * 109.54486 * 297.02569 * 5 4 2 7 7 C 1.52998 * 109.54435 * 176.84876 * 5 4 2 8 8 C 1.53004 * 109.47169 * 174.99972 * 7 5 4 9 9 N 1.46505 * 109.47209 * 180.02562 * 8 7 5 10 10 C 1.38814 * 120.00129 * 179.97438 * 9 8 7 11 11 C 1.39797 * 119.58644 * 0.02562 * 10 9 8 12 12 C 1.38598 * 119.49444 * 179.97438 * 11 10 9 13 13 C 1.38387 * 118.67912 * 0.02562 * 12 11 10 14 14 C 1.40555 * 119.15104 * 359.97438 * 13 12 11 15 15 C 1.41312 * 119.78563 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00102 * 353.77987 * 15 14 13 17 17 C 1.40033 * 120.00059 * 173.78207 * 15 14 13 18 18 N 1.30741 * 119.99536 * 6.34972 * 17 15 14 19 19 Si 1.86791 * 119.99978 * 186.35012 * 17 15 14 20 20 H 1.48505 * 109.47284 * 94.98368 * 19 17 15 21 21 H 1.48498 * 109.47346 * 214.98407 * 19 17 15 22 22 H 1.48507 * 109.47432 * 334.98755 * 19 17 15 23 23 N 1.31954 * 119.58816 * 179.72659 * 10 9 8 24 24 C 1.53173 * 109.03904 * 56.98302 * 5 4 2 25 25 C 1.53099 * 109.16364 * 303.02018 * 24 5 4 26 26 O 1.42901 * 109.41246 * 57.60659 * 25 24 5 27 27 H 1.08996 * 109.47143 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46895 * 300.02921 * 1 2 3 29 29 H 1.09002 * 109.46897 * 60.02924 * 1 2 3 30 30 H 1.09007 * 109.52345 * 62.50815 * 4 2 1 31 31 H 1.08994 * 109.57836 * 302.34861 * 4 2 1 32 32 H 1.09003 * 109.47193 * 55.00086 * 7 5 4 33 33 H 1.08995 * 109.47240 * 295.00194 * 7 5 4 34 34 H 1.08992 * 109.47370 * 60.00173 * 8 7 5 35 35 H 1.09003 * 109.47067 * 299.99941 * 8 7 5 36 36 H 0.97003 * 119.99416 * 359.72383 * 9 8 7 37 37 H 1.08002 * 120.25584 * 359.97245 * 11 10 9 38 38 H 1.07996 * 120.65842 * 180.02562 * 12 11 10 39 39 H 1.07997 * 120.42434 * 180.02562 * 13 12 11 40 40 H 0.97003 * 119.99196 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.52189 * 62.92417 * 24 5 4 42 42 H 1.09002 * 109.52583 * 183.11577 * 24 5 4 43 43 H 1.09003 * 109.47764 * 297.62713 * 25 24 5 44 44 H 1.09001 * 109.48983 * 177.59526 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0405 -0.7224 -1.2495 5 6 3.5711 -0.7710 -1.2121 6 1 3.9690 0.2434 -1.2424 7 6 4.0877 -1.5596 -2.4171 8 6 5.6164 -1.5019 -2.4470 9 7 6.1111 -2.2566 -3.6012 10 6 7.4758 -2.3466 -3.8384 11 6 8.3705 -1.7143 -2.9701 12 6 9.7328 -1.8059 -3.2085 13 6 10.1678 -2.5256 -4.3075 14 6 9.2189 -3.1389 -5.1435 15 6 9.6482 -3.8776 -6.2691 16 1 10.6929 -3.8867 -6.5426 17 6 8.7190 -4.5978 -7.0300 18 7 7.4412 -4.4885 -6.7759 19 14 9.3053 -5.7144 -8.4079 20 1 9.4333 -7.1035 -7.8988 21 1 8.3233 -5.6838 -9.5215 22 1 10.6254 -5.2436 -8.8989 23 7 7.9126 -3.0329 -4.8774 24 6 4.0176 -1.4602 0.0809 25 6 3.4307 -0.7094 1.2791 26 8 2.0066 -0.6743 1.1664 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5143 0.8897 29 1 -0.3633 0.5134 -0.8903 30 1 1.7149 -0.1844 -2.1399 31 1 1.6443 -1.7375 -1.2720 32 1 3.6897 -1.1246 -3.3338 33 1 3.7648 -2.5976 -2.3376 34 1 6.0144 -1.9370 -1.5304 35 1 5.9393 -0.4639 -2.5266 36 1 5.4850 -2.6963 -4.1976 37 1 8.0031 -1.1586 -2.1200 38 1 10.4407 -1.3251 -2.5496 39 1 11.2229 -2.6156 -4.5196 40 1 6.7976 -4.9871 -7.3032 41 1 3.6613 -2.4903 0.0864 42 1 5.1059 -1.4499 0.1421 43 1 3.8193 0.3089 1.2958 44 1 3.7100 -1.2202 2.2006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116662249.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:42 Heat of formation + Delta-G solvation = -32.437545 kcal Electronic energy + Delta-G solvation = -22581.055938 eV Core-core repulsion = 19304.212042 eV Total energy + Delta-G solvation = -3276.843896 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.82172 -38.24610 -36.23607 -34.24690 -33.16588 -32.93462 -30.52716 -29.88374 -28.39446 -27.26755 -25.32990 -23.86231 -23.21420 -21.61976 -20.98029 -20.24347 -20.13839 -17.34316 -16.52283 -16.25825 -16.00112 -15.38355 -15.04132 -14.76190 -14.62211 -14.36702 -14.10662 -13.73189 -13.26261 -12.92199 -12.77353 -12.59849 -12.42951 -12.16616 -12.07929 -11.96234 -11.61434 -11.39839 -11.30565 -11.15523 -10.97518 -10.88818 -10.63430 -10.45032 -10.38744 -10.37061 -9.90285 -9.58800 -9.43595 -8.85175 -7.88652 -7.48443 -6.48114 -6.31885 -4.45171 2.89036 3.12211 3.15855 3.25832 3.31965 3.57539 3.99868 4.11771 4.50587 4.58882 4.69615 4.79421 4.85759 4.94694 5.05744 5.17327 5.30611 5.33305 5.37664 5.46310 5.48485 5.65494 5.67746 5.73389 5.81720 5.87427 5.93857 5.98210 6.04110 6.12963 6.18023 6.28800 6.35700 6.59915 6.88370 6.91807 6.97832 7.06112 7.27235 7.62385 7.83860 7.94250 8.19667 8.39608 8.71758 8.82793 9.14679 10.26765 10.42537 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.026336 B = 0.002882 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.948409 B = 9712.871560 C =10540.368895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.085 3.915 3 H 0.056 0.944 4 C -0.144 4.144 5 C -0.085 4.085 6 H 0.073 0.927 7 C -0.123 4.123 8 C 0.142 3.858 9 N -0.740 5.740 10 C 0.411 3.589 11 C -0.367 4.367 12 C -0.033 4.033 13 C -0.317 4.317 14 C 0.292 3.708 15 C -0.436 4.436 16 H 0.083 0.917 17 C 0.071 3.929 18 N -0.716 5.716 19 Si 0.905 3.095 20 H -0.271 1.271 21 H -0.277 1.277 22 H -0.262 1.262 23 N -0.533 5.533 24 C -0.155 4.155 25 C 0.062 3.938 26 O -0.383 6.383 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.395 0.605 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.269 0.731 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.049 0.951 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.939 6.743 10.616 17.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.028 3.972 3 H 0.074 0.926 4 C -0.182 4.182 5 C -0.104 4.104 6 H 0.091 0.909 7 C -0.161 4.161 8 C 0.016 3.984 9 N -0.377 5.377 10 C 0.171 3.829 11 C -0.393 4.393 12 C -0.057 4.057 13 C -0.340 4.340 14 C 0.165 3.835 15 C -0.468 4.468 16 H 0.101 0.899 17 C -0.154 4.154 18 N -0.338 5.338 19 Si 0.729 3.271 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.186 1.186 23 N -0.255 5.255 24 C -0.192 4.192 25 C -0.015 4.015 26 O -0.303 6.303 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.229 0.771 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.067 0.933 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.833 6.301 10.294 17.617 hybrid contribution 0.886 -0.139 -0.434 0.996 sum -11.947 6.163 9.859 16.671 Atomic orbital electron populations 1.21768 0.93266 1.02920 1.02273 1.22088 0.94879 0.94959 0.85289 0.92598 1.22283 0.95655 1.02058 0.98205 1.21122 0.94926 0.99737 0.94576 0.90875 1.21786 0.95497 1.00923 0.97918 1.21073 0.92313 0.95629 0.89347 1.44155 1.04073 1.59294 1.30172 1.18532 0.83956 0.90060 0.90352 1.20598 0.93620 1.18489 1.06575 1.20597 0.94252 0.95414 0.95431 1.21533 0.98675 1.12140 1.01652 1.18209 0.85910 0.88302 0.91062 1.19578 0.95131 1.24139 1.07933 0.89880 1.26052 0.94619 0.96798 0.97898 1.70162 1.01517 1.29969 1.32174 0.86363 0.79718 0.80573 0.80398 1.19588 1.20263 1.18567 1.68213 1.16459 1.22859 1.17927 1.22331 1.01716 1.00574 0.94596 1.22575 0.80796 0.99564 0.98529 1.87911 1.21241 1.78062 1.43052 0.91816 0.92007 0.91125 0.90859 0.90904 0.91300 0.91321 0.93102 0.93374 0.77098 0.89297 0.88975 0.88718 0.91998 0.90877 0.90237 0.93307 0.88942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.56 37.16 0.36 -0.75 16 2 C 0.09 0.78 3.27 -26.68 -0.09 0.70 16 3 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.14 -1.33 4.70 -26.59 -0.13 -1.46 16 5 C -0.08 -0.86 2.27 -90.44 -0.21 -1.06 16 6 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 7 C -0.12 -1.49 4.80 -26.73 -0.13 -1.61 16 8 C 0.14 2.20 4.65 -4.04 -0.02 2.18 16 9 N -0.74 -15.03 5.72 -60.39 -0.35 -15.38 16 10 C 0.41 10.24 7.65 -155.33 -1.19 9.05 16 11 C -0.37 -8.62 9.34 -38.87 -0.36 -8.99 16 12 C -0.03 -0.77 10.15 -39.39 -0.40 -1.17 16 13 C -0.32 -8.17 9.83 -38.65 -0.38 -8.55 16 14 C 0.29 8.29 6.54 -85.00 -0.56 7.73 16 15 C -0.44 -11.98 9.13 -37.74 -0.34 -12.33 16 16 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 17 C 0.07 1.85 5.49 -17.34 -0.10 1.76 16 18 N -0.72 -19.28 11.48 55.55 0.64 -18.64 16 19 Si 0.91 18.94 29.56 -169.99 -5.03 13.91 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 21 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 22 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 23 N -0.53 -15.01 7.91 -10.33 -0.08 -15.09 16 24 C -0.15 -1.55 5.10 -26.59 -0.14 -1.69 16 25 C 0.06 0.58 6.84 37.21 0.25 0.84 16 26 O -0.38 -4.21 10.41 -35.23 -0.37 -4.57 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.79 6.44 -51.93 -0.33 0.46 16 35 H 0.05 0.75 7.92 -51.93 -0.41 0.34 16 36 H 0.39 7.99 8.59 -40.82 -0.35 7.64 16 37 H 0.09 1.86 6.68 -52.49 -0.35 1.50 16 38 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 39 H 0.09 2.27 8.06 -52.49 -0.42 1.84 16 40 H 0.27 6.56 8.29 -40.82 -0.34 6.22 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.08 0.81 6.75 -51.93 -0.35 0.46 16 43 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 352.09 15.07 5.31 5.31 Total: -1.00 -30.59 352.09 -10.56 -41.14 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -7.26 Total: 8.68 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -3.42 Total: -15.36 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: 0.21 Total: -49.11 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: -0.37 Total: -4.57 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.59 -10.56 -41.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116662249.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.707 kcal (2) G-P(sol) polarization free energy of solvation -30.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds