Wall clock time and date at job start Tue Mar 31 2020 07:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.48225 * 2 1 4 4 C 1.53086 * 109.48363 * 120.02603 * 2 1 3 5 5 C 1.53176 * 109.16495 * 177.58976 * 4 2 1 6 6 H 1.09004 * 109.54217 * 62.89282 * 5 4 2 7 7 C 1.53004 * 109.54533 * 183.06126 * 5 4 2 8 8 C 1.52997 * 109.47292 * 185.00011 * 7 5 4 9 9 N 1.46503 * 109.47256 * 180.02562 * 8 7 5 10 10 C 1.38819 * 120.00143 * 180.02562 * 9 8 7 11 11 C 1.39796 * 119.58466 * 0.02562 * 10 9 8 12 12 C 1.38595 * 119.49028 * 179.97438 * 11 10 9 13 13 C 1.38383 * 118.68228 * 359.97438 * 12 11 10 14 14 C 1.40559 * 119.15165 * 359.97438 * 13 12 11 15 15 C 1.41311 * 119.78855 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99791 * 0.02562 * 15 14 13 17 17 C 1.40024 * 120.00172 * 180.02562 * 15 14 13 18 18 N 1.30746 * 119.99816 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99950 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47389 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47046 * 119.99781 * 19 17 15 22 22 H 1.48499 * 109.46932 * 239.99639 * 19 17 15 23 23 N 1.31960 * 119.58471 * 179.72882 * 10 9 8 24 24 C 1.53179 * 109.03818 * 303.02046 * 5 4 2 25 25 C 1.53093 * 109.16235 * 56.98189 * 24 5 4 26 26 O 1.42904 * 109.48085 * 239.97344 * 2 1 3 27 27 H 1.09002 * 109.47153 * 299.97197 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.97369 * 1 2 3 30 30 H 1.09000 * 109.52565 * 297.49646 * 4 2 1 31 31 H 1.08999 * 109.52234 * 57.62499 * 4 2 1 32 32 H 1.08995 * 109.47084 * 305.00811 * 7 5 4 33 33 H 1.09006 * 109.46776 * 65.00072 * 7 5 4 34 34 H 1.08994 * 109.47452 * 299.99934 * 8 7 5 35 35 H 1.08997 * 109.47053 * 60.00502 * 8 7 5 36 36 H 0.96999 * 119.99672 * 0.02562 * 9 8 7 37 37 H 1.08001 * 120.25379 * 359.97306 * 11 10 9 38 38 H 1.07997 * 120.65824 * 179.97438 * 12 11 10 39 39 H 1.08003 * 120.42806 * 179.97438 * 13 12 11 40 40 H 0.97003 * 119.99861 * 180.02562 * 18 17 15 41 41 H 1.09001 * 109.52251 * 176.88651 * 24 5 4 42 42 H 1.08999 * 109.52134 * 297.01079 * 24 5 4 43 43 H 1.08998 * 109.47873 * 62.37249 * 25 24 5 44 44 H 1.08996 * 109.47957 * 182.40769 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7222 1.2495 5 6 3.5711 -0.7708 1.2121 6 1 3.9690 0.2436 1.2408 7 6 4.0879 -1.5574 2.4184 8 6 5.6165 -1.4995 2.4481 9 7 6.1114 -2.2532 3.6028 10 6 7.4762 -2.3430 3.8400 11 6 8.3707 -1.7104 2.9716 12 6 9.7329 -1.8008 3.2106 13 6 10.1681 -2.5197 4.3100 14 6 9.2193 -3.1324 5.1467 15 6 9.6488 -3.8702 6.2728 16 1 10.7031 -3.9614 6.4885 17 6 8.7075 -4.4829 7.1090 18 7 7.4311 -4.3720 6.8482 19 14 9.2753 -5.4575 8.5980 20 1 10.7582 -5.4306 8.6712 21 1 8.7074 -4.8542 9.8305 22 1 8.8115 -6.8629 8.4759 23 7 7.9127 -3.0194 4.8855 24 6 4.0176 -1.4601 -0.0810 25 6 3.4307 -0.7093 -1.2792 26 8 2.0065 -0.6742 -1.1664 27 1 -0.3633 0.5134 0.8902 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5143 -0.8898 30 1 1.7149 -0.1842 2.1398 31 1 1.6435 -1.7370 1.2715 32 1 3.6898 -1.1209 3.3344 33 1 3.7650 -2.5956 2.3405 34 1 6.0145 -1.9361 1.5322 35 1 5.9393 -0.4614 2.5260 36 1 5.4853 -2.6895 4.2017 37 1 8.0030 -1.1555 2.1212 38 1 10.4407 -1.3198 2.5517 39 1 11.2232 -2.6088 4.5226 40 1 6.7790 -4.7961 7.4277 41 1 5.1059 -1.4498 -0.1422 42 1 3.6623 -2.4905 -0.0859 43 1 3.8193 0.3089 -1.2959 44 1 3.7100 -1.2203 -2.2005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116662256.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:55 Heat of formation + Delta-G solvation = -32.287574 kcal Electronic energy + Delta-G solvation = -22581.385875 eV Core-core repulsion = 19304.548482 eV Total energy + Delta-G solvation = -3276.837393 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.82076 -38.24439 -36.23463 -34.24622 -33.16567 -32.93488 -30.52488 -29.88220 -28.39415 -27.26655 -25.33042 -23.86230 -23.21418 -21.61945 -20.97998 -20.24262 -20.13740 -17.34277 -16.52249 -16.26020 -16.00042 -15.38323 -15.03945 -14.75884 -14.62182 -14.36576 -14.10405 -13.73273 -13.26405 -12.92266 -12.77432 -12.59838 -12.43015 -12.15818 -12.07896 -11.96162 -11.60865 -11.40733 -11.30495 -11.15725 -10.96019 -10.88698 -10.61850 -10.46151 -10.38153 -10.37140 -9.88343 -9.58975 -9.46175 -8.85237 -7.88668 -7.48698 -6.48091 -6.30800 -4.45371 2.88157 3.12459 3.17005 3.26034 3.31617 3.57532 3.99754 4.11894 4.50615 4.58852 4.69673 4.79534 4.86260 4.94715 5.05795 5.17372 5.30653 5.33359 5.37663 5.46366 5.48515 5.65578 5.67813 5.73448 5.81716 5.87561 5.93902 5.98255 6.04609 6.13733 6.17621 6.28831 6.35821 6.60047 6.88504 6.91875 6.97628 7.06125 7.27325 7.62394 7.83996 7.94410 8.19718 8.39725 8.71860 8.82862 9.14879 10.27008 10.42728 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.026402 B = 0.002883 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.259824 B = 9709.480502 C =10557.787374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.085 3.915 3 H 0.056 0.944 4 C -0.144 4.144 5 C -0.085 4.085 6 H 0.073 0.927 7 C -0.123 4.123 8 C 0.142 3.858 9 N -0.740 5.740 10 C 0.411 3.589 11 C -0.367 4.367 12 C -0.033 4.033 13 C -0.317 4.317 14 C 0.292 3.708 15 C -0.434 4.434 16 H 0.083 0.917 17 C 0.071 3.929 18 N -0.716 5.716 19 Si 0.905 3.095 20 H -0.261 1.261 21 H -0.274 1.274 22 H -0.274 1.274 23 N -0.532 5.532 24 C -0.155 4.155 25 C 0.062 3.938 26 O -0.383 6.383 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.395 0.605 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.268 0.732 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.049 0.951 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.938 6.720 -10.610 17.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.028 3.972 3 H 0.074 0.926 4 C -0.182 4.182 5 C -0.104 4.104 6 H 0.091 0.909 7 C -0.161 4.161 8 C 0.016 3.984 9 N -0.377 5.377 10 C 0.171 3.829 11 C -0.393 4.393 12 C -0.057 4.057 13 C -0.340 4.340 14 C 0.165 3.835 15 C -0.467 4.467 16 H 0.101 0.899 17 C -0.154 4.154 18 N -0.338 5.338 19 Si 0.729 3.271 20 H -0.184 1.184 21 H -0.200 1.200 22 H -0.200 1.200 23 N -0.254 5.254 24 C -0.192 4.192 25 C -0.015 4.015 26 O -0.303 6.303 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.229 0.771 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.067 0.933 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.829 6.293 -10.279 17.602 hybrid contribution 0.868 -0.052 0.502 1.004 sum -11.961 6.240 -9.777 16.661 Atomic orbital electron populations 1.21769 0.93268 1.02920 1.02273 1.22086 0.94877 0.94960 0.85293 0.92605 1.22281 0.95654 1.02061 0.98204 1.21122 0.94918 0.99745 0.94570 0.90889 1.21785 0.95498 1.00936 0.97899 1.21070 0.92310 0.95629 0.89349 1.44154 1.04063 1.59465 1.30012 1.18538 0.83955 0.90042 0.90369 1.20596 0.93629 1.18421 1.06654 1.20593 0.94252 0.95459 0.95389 1.21531 0.98684 1.12033 1.01769 1.18215 0.85919 0.88428 0.90970 1.19612 0.94251 1.26476 1.06327 0.89867 1.26057 0.94669 0.95942 0.98740 1.70170 1.01257 1.30050 1.32324 0.86326 0.80215 0.79521 0.81035 1.18449 1.19965 1.19965 1.68221 1.16441 1.23082 1.17656 1.22329 1.01719 1.00575 0.94595 1.22573 0.80793 0.99562 0.98526 1.87911 1.21242 1.78066 1.43047 0.91125 0.91817 0.92006 0.90860 0.90905 0.91303 0.91316 0.93092 0.93388 0.77099 0.89302 0.88982 0.88727 0.92050 0.90242 0.90877 0.93304 0.88940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.56 37.16 0.36 -0.75 16 2 C 0.09 0.78 3.26 -26.69 -0.09 0.70 16 3 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.14 -1.33 4.70 -26.60 -0.13 -1.46 16 5 C -0.08 -0.86 2.27 -90.43 -0.21 -1.06 16 6 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 7 C -0.12 -1.49 4.80 -26.73 -0.13 -1.61 16 8 C 0.14 2.20 4.65 -4.04 -0.02 2.18 16 9 N -0.74 -15.04 5.72 -60.40 -0.35 -15.39 16 10 C 0.41 10.24 7.65 -155.32 -1.19 9.05 16 11 C -0.37 -8.63 9.34 -38.87 -0.36 -8.99 16 12 C -0.03 -0.77 10.15 -39.40 -0.40 -1.17 16 13 C -0.32 -8.18 9.83 -38.65 -0.38 -8.56 16 14 C 0.29 8.28 6.55 -85.00 -0.56 7.72 16 15 C -0.43 -11.95 9.14 -37.75 -0.34 -12.29 16 16 H 0.08 2.15 7.85 -52.48 -0.41 1.74 16 17 C 0.07 1.84 5.50 -17.34 -0.10 1.74 16 18 N -0.72 -19.26 11.46 55.55 0.64 -18.62 16 19 Si 0.90 18.92 29.56 -169.99 -5.02 13.89 16 20 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 23 N -0.53 -14.99 7.89 -10.33 -0.08 -15.07 16 24 C -0.15 -1.55 5.11 -26.59 -0.14 -1.69 16 25 C 0.06 0.58 6.84 37.21 0.25 0.84 16 26 O -0.38 -4.21 10.41 -35.23 -0.37 -4.57 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.79 6.44 -51.93 -0.33 0.46 16 35 H 0.05 0.75 7.92 -51.93 -0.41 0.34 16 36 H 0.39 7.99 8.59 -40.82 -0.35 7.64 16 37 H 0.09 1.86 6.68 -52.49 -0.35 1.50 16 38 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 39 H 0.09 2.26 8.06 -52.48 -0.42 1.84 16 40 H 0.27 6.53 8.29 -40.82 -0.34 6.19 16 41 H 0.08 0.81 6.75 -51.93 -0.35 0.45 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 352.05 15.07 5.31 5.31 Total: -1.00 -30.60 352.05 -10.56 -41.16 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -7.26 Total: 8.66 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -3.42 Total: -15.36 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: 0.21 Total: -49.08 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: -0.37 Total: -4.57 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.02 Total: 13.89 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.60 -10.56 -41.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116662256.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.868 kcal (2) G-P(sol) polarization free energy of solvation -30.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds