Wall clock time and date at job start Tue Mar 31 2020 07:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.48225 * 2 1 4 4 C 1.53086 * 109.48363 * 120.02603 * 2 1 3 5 5 C 1.53176 * 109.16495 * 177.58976 * 4 2 1 6 6 H 1.09004 * 109.54217 * 62.89282 * 5 4 2 7 7 C 1.53004 * 109.54533 * 183.06126 * 5 4 2 8 8 C 1.52997 * 109.47292 * 185.00011 * 7 5 4 9 9 N 1.46503 * 109.47256 * 180.02562 * 8 7 5 10 10 C 1.38819 * 120.00143 * 180.02562 * 9 8 7 11 11 C 1.39796 * 119.58466 * 0.02562 * 10 9 8 12 12 C 1.38595 * 119.49028 * 179.97438 * 11 10 9 13 13 C 1.38383 * 118.68228 * 359.97438 * 12 11 10 14 14 C 1.40559 * 119.15165 * 359.97438 * 13 12 11 15 15 C 1.41311 * 119.78855 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99791 * 0.02562 * 15 14 13 17 17 C 1.40024 * 120.00172 * 180.02562 * 15 14 13 18 18 N 1.30746 * 119.99816 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99950 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47389 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47046 * 119.99781 * 19 17 15 22 22 H 1.48499 * 109.46932 * 239.99639 * 19 17 15 23 23 N 1.31960 * 119.58471 * 179.72882 * 10 9 8 24 24 C 1.53179 * 109.03818 * 303.02046 * 5 4 2 25 25 C 1.53093 * 109.16235 * 56.98189 * 24 5 4 26 26 O 1.42904 * 109.48085 * 239.97344 * 2 1 3 27 27 H 1.09002 * 109.47153 * 299.97197 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.97369 * 1 2 3 30 30 H 1.09000 * 109.52565 * 297.49646 * 4 2 1 31 31 H 1.08999 * 109.52234 * 57.62499 * 4 2 1 32 32 H 1.08995 * 109.47084 * 305.00811 * 7 5 4 33 33 H 1.09006 * 109.46776 * 65.00072 * 7 5 4 34 34 H 1.08994 * 109.47452 * 299.99934 * 8 7 5 35 35 H 1.08997 * 109.47053 * 60.00502 * 8 7 5 36 36 H 0.96999 * 119.99672 * 0.02562 * 9 8 7 37 37 H 1.08001 * 120.25379 * 359.97306 * 11 10 9 38 38 H 1.07997 * 120.65824 * 179.97438 * 12 11 10 39 39 H 1.08003 * 120.42806 * 179.97438 * 13 12 11 40 40 H 0.97003 * 119.99861 * 180.02562 * 18 17 15 41 41 H 1.09001 * 109.52251 * 176.88651 * 24 5 4 42 42 H 1.08999 * 109.52134 * 297.01079 * 24 5 4 43 43 H 1.08998 * 109.47873 * 62.37249 * 25 24 5 44 44 H 1.08996 * 109.47957 * 182.40769 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7222 1.2495 5 6 3.5711 -0.7708 1.2121 6 1 3.9690 0.2436 1.2408 7 6 4.0879 -1.5574 2.4184 8 6 5.6165 -1.4995 2.4481 9 7 6.1114 -2.2532 3.6028 10 6 7.4762 -2.3430 3.8400 11 6 8.3707 -1.7104 2.9716 12 6 9.7329 -1.8008 3.2106 13 6 10.1681 -2.5197 4.3100 14 6 9.2193 -3.1324 5.1467 15 6 9.6488 -3.8702 6.2728 16 1 10.7031 -3.9614 6.4885 17 6 8.7075 -4.4829 7.1090 18 7 7.4311 -4.3720 6.8482 19 14 9.2753 -5.4575 8.5980 20 1 10.7582 -5.4306 8.6712 21 1 8.7074 -4.8542 9.8305 22 1 8.8115 -6.8629 8.4759 23 7 7.9127 -3.0194 4.8855 24 6 4.0176 -1.4601 -0.0810 25 6 3.4307 -0.7093 -1.2792 26 8 2.0065 -0.6742 -1.1664 27 1 -0.3633 0.5134 0.8902 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5143 -0.8898 30 1 1.7149 -0.1842 2.1398 31 1 1.6435 -1.7370 1.2715 32 1 3.6898 -1.1209 3.3344 33 1 3.7650 -2.5956 2.3405 34 1 6.0145 -1.9361 1.5322 35 1 5.9393 -0.4614 2.5260 36 1 5.4853 -2.6895 4.2017 37 1 8.0030 -1.1555 2.1212 38 1 10.4407 -1.3198 2.5517 39 1 11.2232 -2.6088 4.5226 40 1 6.7790 -4.7961 7.4277 41 1 5.1059 -1.4498 -0.1422 42 1 3.6623 -2.4905 -0.0859 43 1 3.8193 0.3089 -1.2959 44 1 3.7100 -1.2203 -2.2005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116662256.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:53 Heat of formation + Delta-G solvation = -49.395878 kcal Electronic energy + Delta-G solvation = -22582.127747 eV Core-core repulsion = 19304.548482 eV Total energy + Delta-G solvation = -3277.579265 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -40.63682 -40.06868 -37.50958 -35.72568 -34.82591 -33.67534 -32.34307 -31.45830 -29.63387 -28.30567 -27.25112 -24.90362 -24.15616 -23.33565 -22.26242 -21.75890 -21.00037 -19.26235 -17.98251 -17.25516 -16.91089 -16.62385 -16.43640 -16.29667 -16.02913 -15.56372 -15.23196 -15.07144 -14.71342 -14.57030 -14.02667 -13.75977 -13.53370 -13.25217 -13.11209 -12.92408 -12.86054 -12.72807 -12.69552 -12.55376 -12.39537 -12.19779 -12.01578 -11.78751 -11.69823 -11.37991 -11.21908 -11.14398 -10.64027 -10.36702 -9.83638 -9.45138 -8.29314 -8.23211 -6.48289 1.05224 1.34217 1.41361 1.56695 1.57167 2.24957 2.64969 2.89127 2.92256 3.64476 3.73885 3.88779 4.02999 4.04433 4.17901 4.26635 4.33018 4.37790 4.39949 4.53429 4.60031 4.63023 4.69479 4.80161 4.82574 4.84703 4.92345 4.97849 5.00510 5.01599 5.06103 5.12713 5.13589 5.19341 5.26594 5.32919 5.38646 5.46447 5.71740 5.96340 6.07515 6.23119 6.34722 6.56456 6.83749 6.95356 7.22226 8.34354 8.51226 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.026402 B = 0.002883 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.259824 B = 9709.480502 C =10557.787374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.081 3.919 3 H 0.064 0.936 4 C -0.140 4.140 5 C -0.079 4.079 6 H 0.080 0.920 7 C -0.111 4.111 8 C 0.141 3.859 9 N -0.736 5.736 10 C 0.392 3.608 11 C -0.367 4.367 12 C -0.030 4.030 13 C -0.345 4.345 14 C 0.257 3.743 15 C -0.471 4.471 16 H 0.086 0.914 17 C 0.024 3.976 18 N -0.752 5.752 19 Si 0.987 3.013 20 H -0.255 1.255 21 H -0.266 1.266 22 H -0.267 1.267 23 N -0.567 5.567 24 C -0.153 4.153 25 C 0.061 3.939 26 O -0.402 6.402 27 H 0.086 0.914 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.392 0.608 37 H 0.118 0.882 38 H 0.130 0.870 39 H 0.102 0.898 40 H 0.276 0.724 41 H 0.078 0.922 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.466 7.432 -11.021 18.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.023 3.977 3 H 0.082 0.918 4 C -0.178 4.178 5 C -0.098 4.098 6 H 0.098 0.902 7 C -0.149 4.149 8 C 0.017 3.983 9 N -0.371 5.371 10 C 0.152 3.848 11 C -0.393 4.393 12 C -0.055 4.055 13 C -0.368 4.368 14 C 0.130 3.870 15 C -0.503 4.503 16 H 0.104 0.896 17 C -0.197 4.197 18 N -0.374 5.374 19 Si 0.807 3.193 20 H -0.179 1.179 21 H -0.191 1.191 22 H -0.192 1.192 23 N -0.290 5.290 24 C -0.191 4.191 25 C -0.015 4.015 26 O -0.322 6.322 27 H 0.105 0.895 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.226 0.774 37 H 0.136 0.864 38 H 0.148 0.852 39 H 0.121 0.879 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.383 7.031 -10.731 18.539 hybrid contribution 0.977 -0.197 0.505 1.117 sum -12.406 6.834 -10.226 17.470 Atomic orbital electron populations 1.21785 0.92263 1.02828 1.03199 1.22235 0.95765 0.95084 0.84573 0.91841 1.22248 0.94745 1.01895 0.98929 1.21085 0.95635 0.99627 0.93498 0.90166 1.21688 0.92959 1.01186 0.99099 1.21297 0.94457 0.94978 0.87554 1.44380 1.02463 1.59292 1.31008 1.19014 0.85972 0.89767 0.90085 1.20946 0.93596 1.17786 1.06958 1.21016 0.95154 0.94363 0.94918 1.21697 0.98842 1.13370 1.02851 1.18708 0.86832 0.89388 0.92076 1.19963 0.94934 1.27950 1.07430 0.89558 1.26980 0.94496 0.96583 1.01648 1.70261 1.02488 1.30914 1.33774 0.85095 0.79809 0.77763 0.76593 1.17871 1.19127 1.19171 1.68195 1.16734 1.24662 1.19396 1.22304 1.01631 1.00141 0.95004 1.22648 0.80241 1.00140 0.98518 1.87897 1.21979 1.78440 1.43866 0.89519 0.92410 0.91797 0.89713 0.91682 0.91038 0.91729 0.92791 0.93028 0.77408 0.86426 0.85238 0.87939 0.91375 0.90332 0.91895 0.92292 0.88079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.56 71.98 0.69 -1.25 16 2 C 0.08 1.33 3.26 30.62 0.10 1.43 16 3 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 4 C -0.14 -2.34 4.70 30.68 0.14 -2.20 16 5 C -0.08 -1.47 2.27 -10.67 -0.02 -1.49 16 6 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 7 C -0.11 -2.54 4.80 30.59 0.15 -2.39 16 8 C 0.14 4.18 4.65 86.38 0.40 4.58 16 9 N -0.74 -29.77 5.72 -345.00 -1.97 -31.74 16 10 C 0.39 19.62 7.65 133.42 1.02 20.64 16 11 C -0.37 -16.82 9.34 22.73 0.21 -16.61 16 12 C -0.03 -1.40 10.15 22.39 0.23 -1.17 16 13 C -0.34 -17.97 9.83 22.87 0.22 -17.75 16 14 C 0.26 15.00 6.55 40.18 0.26 15.26 16 15 C -0.47 -26.62 9.14 23.46 0.21 -26.40 16 16 H 0.09 4.59 7.85 -2.91 -0.02 4.57 16 17 C 0.02 1.29 5.50 85.29 0.47 1.75 16 18 N -0.75 -41.35 11.46 21.84 0.25 -41.10 16 19 Si 0.99 39.16 29.56 68.60 2.03 41.19 16 20 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 21 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 22 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 23 N -0.57 -32.71 7.89 -186.59 -1.47 -34.18 16 24 C -0.15 -2.85 5.11 30.69 0.16 -2.70 16 25 C 0.06 1.04 6.84 72.01 0.49 1.53 16 26 O -0.40 -8.21 10.41 -148.98 -1.55 -9.76 16 27 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 34 H 0.05 1.59 6.44 -2.39 -0.02 1.57 16 35 H 0.05 1.51 7.92 -2.39 -0.02 1.50 16 36 H 0.39 16.05 8.59 -92.71 -0.80 15.26 16 37 H 0.12 4.61 6.68 -2.91 -0.02 4.59 16 38 H 0.13 4.87 8.06 -2.91 -0.02 4.85 16 39 H 0.10 4.98 8.06 -2.91 -0.02 4.96 16 40 H 0.28 13.63 8.29 -92.71 -0.77 12.86 16 41 H 0.08 1.46 6.75 -2.39 -0.02 1.45 16 42 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -66.99 352.05 2.20 -64.78 By element: Atomic # 1 Polarization: 37.38 SS G_CDS: 0.18 Total: 37.56 kcal Atomic # 6 Polarization: -31.49 SS G_CDS: 4.74 Total: -26.75 kcal Atomic # 7 Polarization: -103.83 SS G_CDS: -3.20 Total: -107.02 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: -1.55 Total: -9.76 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.19 kcal Total: -66.99 2.20 -64.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116662256.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.388 kcal (2) G-P(sol) polarization free energy of solvation -66.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds