Wall clock time and date at job start Tue Mar 31 2020 07:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34785 * 119.99608 * 2 1 4 4 O 1.21278 * 119.99773 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99835 * 179.97438 * 3 2 1 6 6 C 1.50700 * 109.47155 * 179.97438 * 5 3 2 7 7 C 1.38122 * 120.03982 * 265.02591 * 6 5 3 8 8 C 1.38267 * 120.07242 * 179.97438 * 7 6 5 9 9 C 1.38305 * 120.15004 * 0.02562 * 8 7 6 10 10 C 1.38085 * 120.07572 * 359.73928 * 9 8 7 11 11 C 1.38893 * 120.03257 * 85.00191 * 6 5 3 12 12 N 1.39678 * 120.07549 * 0.02562 * 11 6 5 13 13 C 1.46498 * 119.99747 * 180.27694 * 12 11 6 14 14 C 1.52996 * 109.47059 * 179.72192 * 13 12 11 15 15 H 1.08999 * 109.47456 * 54.99631 * 14 13 12 16 16 C 1.53008 * 109.46909 * 294.99709 * 14 13 12 17 17 C 1.53004 * 109.47336 * 175.00083 * 14 13 12 18 18 C 1.50699 * 109.46790 * 184.99844 * 17 14 13 19 19 H 1.07993 * 120.00794 * 359.97438 * 18 17 14 20 20 C 1.37880 * 119.99490 * 179.97438 * 18 17 14 21 21 N 1.31512 * 120.00178 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00247 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47218 * 89.99244 * 22 20 18 24 24 H 1.48502 * 109.47244 * 209.99734 * 22 20 18 25 25 H 1.48506 * 109.46775 * 329.99158 * 22 20 18 26 26 H 1.08999 * 109.47212 * 60.00665 * 1 2 3 27 27 H 1.09005 * 109.46886 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47690 * 300.00384 * 1 2 3 29 29 H 0.96998 * 120.00797 * 179.97438 * 2 1 3 30 30 H 1.09009 * 109.47096 * 60.00122 * 5 3 2 31 31 H 1.09003 * 109.47218 * 300.00177 * 5 3 2 32 32 H 1.07999 * 119.96096 * 359.97438 * 7 6 5 33 33 H 1.08000 * 119.91897 * 179.97438 * 8 7 6 34 34 H 1.07999 * 119.95970 * 179.97438 * 9 8 7 35 35 H 1.08001 * 120.03664 * 180.27408 * 10 9 8 36 36 H 0.97001 * 119.99807 * 359.97438 * 12 11 6 37 37 H 1.09004 * 109.46963 * 299.71988 * 13 12 11 38 38 H 1.08994 * 109.47567 * 59.72140 * 13 12 11 39 39 H 1.08995 * 109.47053 * 60.00309 * 16 14 13 40 40 H 1.09001 * 109.46930 * 179.97438 * 16 14 13 41 41 H 1.09000 * 109.46973 * 299.99649 * 16 14 13 42 42 H 1.09005 * 109.46502 * 304.99456 * 17 14 13 43 43 H 1.08996 * 109.47343 * 64.99524 * 17 14 13 44 44 H 0.97001 * 120.00658 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5323 2.2175 -0.0005 5 6 3.6458 1.1674 0.0006 6 6 4.1481 2.5882 -0.0002 7 6 4.4767 3.2048 -1.1917 8 6 4.9371 4.5085 -1.1932 9 6 5.0707 5.1995 -0.0025 10 6 4.7393 4.5907 1.1917 11 6 4.2805 3.2793 1.1973 12 7 3.9491 2.6588 2.4040 13 6 4.0837 3.3914 3.6655 14 6 3.6522 2.4924 4.8258 15 1 4.2239 1.5647 4.7988 16 6 2.1606 2.1762 4.6986 17 6 3.9097 3.2117 6.1515 18 6 3.6003 2.2815 7.2960 19 1 3.2542 1.2779 7.0979 20 6 3.7591 2.7119 8.5963 21 7 3.4896 1.9001 9.5952 22 14 4.3571 4.4481 8.9391 23 1 3.1912 5.3621 9.0413 24 1 5.1149 4.4676 10.2161 25 1 5.2408 4.8948 7.8323 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.9501 -0.8400 0.0004 30 1 4.0095 0.6533 -0.8892 31 1 4.0088 0.6537 0.8908 32 1 4.3740 2.6679 -2.1231 33 1 5.1938 4.9881 -2.1262 34 1 5.4310 6.2176 -0.0073 35 1 4.8397 5.1323 2.1207 36 1 3.6256 1.7443 2.4063 37 1 5.1231 3.6891 3.8036 38 1 3.4519 4.2792 3.6394 39 1 1.9771 1.6637 3.7543 40 1 1.8533 1.5353 5.5250 41 1 1.5889 3.1038 4.7257 42 1 4.9553 3.5157 6.2027 43 1 3.2716 4.0929 6.2166 44 1 3.6010 2.2029 10.5100 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119296449.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:39 Heat of formation + Delta-G solvation = -26.976943 kcal Electronic energy + Delta-G solvation = -23036.166354 eV Core-core repulsion = 19759.559248 eV Total energy + Delta-G solvation = -3276.607107 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 21.05 seconds Orbital eigenvalues (eV) -40.22658 -38.88785 -36.71963 -34.68512 -34.04106 -32.82184 -32.02322 -29.29408 -28.45917 -27.34473 -25.99568 -25.71719 -22.88293 -21.71483 -21.08988 -20.44043 -19.25455 -17.45694 -17.18491 -16.83147 -16.28687 -15.95966 -15.19142 -15.01221 -14.67743 -14.22744 -14.00377 -13.89196 -13.58174 -13.26105 -13.13307 -13.00321 -12.85051 -12.45314 -12.31782 -12.13376 -12.01318 -11.76158 -11.19948 -11.09584 -10.93781 -10.84653 -10.52996 -10.07150 -9.99753 -9.79768 -9.72099 -9.59723 -9.28653 -9.14410 -8.65287 -8.56080 -7.14984 -6.06594 -4.04469 1.51431 1.82579 2.57479 3.10643 3.29658 3.37341 3.40362 3.70106 4.05221 4.43328 4.62487 4.81299 4.85591 5.10621 5.14447 5.23094 5.26834 5.29372 5.33125 5.42478 5.57731 5.58913 5.62614 5.75279 5.79788 5.92855 6.12569 6.14563 6.21434 6.29234 6.33406 6.47754 6.60474 6.68891 6.76915 6.82472 6.98389 7.04897 7.19196 7.30363 7.36171 7.56458 7.76390 7.93742 8.13919 8.50666 8.97465 9.55826 11.06603 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.015800 B = 0.004003 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.769859 B = 6993.021484 C = 8421.204995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.742 5.742 3 C 0.507 3.493 4 O -0.520 6.520 5 C -0.092 4.092 6 C -0.155 4.155 7 C -0.060 4.060 8 C -0.190 4.190 9 C -0.070 4.070 10 C -0.199 4.199 11 C 0.242 3.758 12 N -0.737 5.737 13 C 0.123 3.877 14 C -0.086 4.086 15 H 0.067 0.933 16 C -0.132 4.132 17 C -0.006 4.006 18 C -0.516 4.516 19 H 0.073 0.927 20 C 0.067 3.933 21 N -0.904 5.904 22 Si 0.878 3.122 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.265 1.265 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.401 0.599 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.394 0.606 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.030 0.970 40 H 0.068 0.932 41 H 0.046 0.954 42 H 0.017 0.983 43 H 0.014 0.986 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.347 -2.418 -22.833 22.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.395 5.395 3 C 0.293 3.707 4 O -0.394 6.394 5 C -0.132 4.132 6 C -0.160 4.160 7 C -0.079 4.079 8 C -0.210 4.210 9 C -0.088 4.088 10 C -0.222 4.222 11 C 0.136 3.864 12 N -0.365 5.365 13 C 0.000 4.000 14 C -0.105 4.105 15 H 0.085 0.915 16 C -0.189 4.189 17 C -0.044 4.044 18 C -0.554 4.554 19 H 0.091 0.909 20 C -0.134 4.134 21 N -0.543 5.543 22 Si 0.705 3.295 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.190 1.190 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.234 0.766 30 H 0.119 0.881 31 H 0.113 0.887 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.134 0.866 35 H 0.139 0.861 36 H 0.229 0.771 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.049 0.951 40 H 0.087 0.913 41 H 0.065 0.935 42 H 0.036 0.964 43 H 0.032 0.968 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.099 -1.529 -22.424 22.476 hybrid contribution 0.278 0.091 0.411 0.504 sum 0.179 -1.438 -22.013 22.061 Atomic orbital electron populations 1.21512 0.79749 1.02044 1.02349 1.45848 1.07754 1.08746 1.77117 1.20808 0.90217 0.83615 0.76065 1.90746 1.70150 1.31128 1.47371 1.20441 0.91736 0.96419 1.04605 1.18612 1.09677 0.95233 0.92498 1.20616 0.96514 0.94755 0.96012 1.20725 1.07231 0.95374 0.97683 1.20848 0.96964 0.98899 0.92123 1.20643 1.08430 0.94303 0.98825 1.17635 0.91471 0.91673 0.85593 1.44952 1.71933 1.16087 1.03487 1.21644 1.00209 0.95562 0.82614 1.21237 0.96472 0.98475 0.94340 0.91487 1.21711 0.95915 1.01324 0.99950 1.19564 0.96447 0.96207 0.92153 1.21076 1.44767 1.00293 0.89257 0.90874 1.25013 0.94908 0.97240 0.96280 1.69904 1.49427 1.35912 0.99022 0.86808 0.79435 0.85447 0.77779 1.20303 1.21416 1.18997 0.92448 0.90794 0.92132 0.76621 0.88141 0.88742 0.86847 0.86881 0.86581 0.86081 0.77084 0.92483 0.92589 0.95133 0.91307 0.93481 0.96439 0.96786 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.73 10.70 59.84 0.64 1.37 16 2 N -0.74 -6.44 5.71 -67.08 -0.38 -6.83 16 3 C 0.51 6.10 7.82 -10.98 -0.09 6.02 16 4 O -0.52 -8.72 16.03 5.56 0.09 -8.63 16 5 C -0.09 -0.92 5.26 -29.04 -0.15 -1.07 16 6 C -0.15 -2.02 4.39 -104.42 -0.46 -2.48 16 7 C -0.06 -0.73 9.67 -39.61 -0.38 -1.11 16 8 C -0.19 -2.29 10.04 -39.55 -0.40 -2.68 16 9 C -0.07 -0.88 10.04 -39.61 -0.40 -1.28 16 10 C -0.20 -2.88 9.31 -39.38 -0.37 -3.24 16 11 C 0.24 3.57 6.63 -83.78 -0.56 3.02 16 12 N -0.74 -10.98 5.36 -58.64 -0.31 -11.29 16 13 C 0.12 2.03 4.30 -4.04 -0.02 2.02 16 14 C -0.09 -1.64 2.37 -90.62 -0.22 -1.86 16 15 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 16 C -0.13 -2.44 8.88 37.16 0.33 -2.11 16 17 C -0.01 -0.14 3.52 -27.88 -0.10 -0.23 16 18 C -0.52 -14.26 8.96 -34.44 -0.31 -14.57 16 19 H 0.07 2.16 7.30 -52.49 -0.38 1.78 16 20 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 21 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 22 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.40 2.15 8.83 -40.82 -0.36 1.79 16 30 H 0.10 0.71 8.05 -51.92 -0.42 0.29 16 31 H 0.09 0.84 6.82 -51.93 -0.35 0.49 16 32 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.12 1.71 6.74 -52.49 -0.35 1.35 16 36 H 0.39 5.52 5.76 -40.82 -0.24 5.28 16 37 H 0.06 0.92 7.96 -51.93 -0.41 0.51 16 38 H 0.06 0.95 7.94 -51.93 -0.41 0.53 16 39 H 0.03 0.50 7.18 -51.93 -0.37 0.12 16 40 H 0.07 1.40 6.95 -51.93 -0.36 1.04 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 43 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 44 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 358.16 15.07 5.40 5.40 Total: -1.00 -33.80 358.16 -8.65 -42.45 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -6.98 Total: 5.21 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -2.56 Total: -16.42 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.08 Total: -44.90 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.09 Total: -8.63 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.80 -8.65 -42.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119296449.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.476 kcal (2) G-P(sol) polarization free energy of solvation -33.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 21.05 seconds