Wall clock time and date at job start Tue Mar 31 2020 07:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34785 * 119.99608 * 2 1 4 4 O 1.21278 * 119.99773 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99835 * 179.97438 * 3 2 1 6 6 C 1.50700 * 109.47155 * 179.97438 * 5 3 2 7 7 C 1.38122 * 120.03982 * 265.02591 * 6 5 3 8 8 C 1.38267 * 120.07242 * 179.97438 * 7 6 5 9 9 C 1.38305 * 120.15004 * 0.02562 * 8 7 6 10 10 C 1.38085 * 120.07572 * 359.73928 * 9 8 7 11 11 C 1.38893 * 120.03257 * 85.00191 * 6 5 3 12 12 N 1.39678 * 120.07549 * 0.02562 * 11 6 5 13 13 C 1.46498 * 119.99747 * 180.27694 * 12 11 6 14 14 C 1.52996 * 109.47059 * 179.72192 * 13 12 11 15 15 H 1.08999 * 109.47456 * 54.99631 * 14 13 12 16 16 C 1.53008 * 109.46909 * 294.99709 * 14 13 12 17 17 C 1.53004 * 109.47336 * 175.00083 * 14 13 12 18 18 C 1.50699 * 109.46790 * 184.99844 * 17 14 13 19 19 H 1.07993 * 120.00794 * 359.97438 * 18 17 14 20 20 C 1.37880 * 119.99490 * 179.97438 * 18 17 14 21 21 N 1.31512 * 120.00178 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00247 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47218 * 89.99244 * 22 20 18 24 24 H 1.48502 * 109.47244 * 209.99734 * 22 20 18 25 25 H 1.48506 * 109.46775 * 329.99158 * 22 20 18 26 26 H 1.08999 * 109.47212 * 60.00665 * 1 2 3 27 27 H 1.09005 * 109.46886 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47690 * 300.00384 * 1 2 3 29 29 H 0.96998 * 120.00797 * 179.97438 * 2 1 3 30 30 H 1.09009 * 109.47096 * 60.00122 * 5 3 2 31 31 H 1.09003 * 109.47218 * 300.00177 * 5 3 2 32 32 H 1.07999 * 119.96096 * 359.97438 * 7 6 5 33 33 H 1.08000 * 119.91897 * 179.97438 * 8 7 6 34 34 H 1.07999 * 119.95970 * 179.97438 * 9 8 7 35 35 H 1.08001 * 120.03664 * 180.27408 * 10 9 8 36 36 H 0.97001 * 119.99807 * 359.97438 * 12 11 6 37 37 H 1.09004 * 109.46963 * 299.71988 * 13 12 11 38 38 H 1.08994 * 109.47567 * 59.72140 * 13 12 11 39 39 H 1.08995 * 109.47053 * 60.00309 * 16 14 13 40 40 H 1.09001 * 109.46930 * 179.97438 * 16 14 13 41 41 H 1.09000 * 109.46973 * 299.99649 * 16 14 13 42 42 H 1.09005 * 109.46502 * 304.99456 * 17 14 13 43 43 H 1.08996 * 109.47343 * 64.99524 * 17 14 13 44 44 H 0.97001 * 120.00658 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5323 2.2175 -0.0005 5 6 3.6458 1.1674 0.0006 6 6 4.1481 2.5882 -0.0002 7 6 4.4767 3.2048 -1.1917 8 6 4.9371 4.5085 -1.1932 9 6 5.0707 5.1995 -0.0025 10 6 4.7393 4.5907 1.1917 11 6 4.2805 3.2793 1.1973 12 7 3.9491 2.6588 2.4040 13 6 4.0837 3.3914 3.6655 14 6 3.6522 2.4924 4.8258 15 1 4.2239 1.5647 4.7988 16 6 2.1606 2.1762 4.6986 17 6 3.9097 3.2117 6.1515 18 6 3.6003 2.2815 7.2960 19 1 3.2542 1.2779 7.0979 20 6 3.7591 2.7119 8.5963 21 7 3.4896 1.9001 9.5952 22 14 4.3571 4.4481 8.9391 23 1 3.1912 5.3621 9.0413 24 1 5.1149 4.4676 10.2161 25 1 5.2408 4.8948 7.8323 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.9501 -0.8400 0.0004 30 1 4.0095 0.6533 -0.8892 31 1 4.0088 0.6537 0.8908 32 1 4.3740 2.6679 -2.1231 33 1 5.1938 4.9881 -2.1262 34 1 5.4310 6.2176 -0.0073 35 1 4.8397 5.1323 2.1207 36 1 3.6256 1.7443 2.4063 37 1 5.1231 3.6891 3.8036 38 1 3.4519 4.2792 3.6394 39 1 1.9771 1.6637 3.7543 40 1 1.8533 1.5353 5.5250 41 1 1.5889 3.1038 4.7257 42 1 4.9553 3.5157 6.2027 43 1 3.2716 4.0929 6.2166 44 1 3.6010 2.2029 10.5100 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119296449.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:31 Heat of formation + Delta-G solvation = -49.395330 kcal Electronic energy + Delta-G solvation = -23037.138489 eV Core-core repulsion = 19759.559248 eV Total energy + Delta-G solvation = -3277.579241 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.16730 -39.86438 -38.11576 -35.54270 -35.51759 -34.15476 -33.56325 -30.49642 -29.57592 -28.88282 -27.20771 -26.64510 -24.57613 -22.75965 -22.22943 -21.36252 -20.75900 -19.00465 -18.34369 -18.07380 -17.28310 -16.94078 -16.42737 -16.09597 -16.00780 -15.80189 -15.22376 -14.89755 -14.76643 -14.63115 -14.37927 -14.09904 -13.97388 -13.88346 -13.54480 -13.25323 -13.08532 -12.91228 -12.90289 -12.64576 -12.28556 -12.09096 -11.80354 -11.72683 -11.67537 -11.37670 -11.14252 -10.98016 -10.85349 -10.75235 -10.09203 -9.60177 -8.27483 -8.21337 -6.30057 0.56327 0.83883 1.36286 1.37498 1.48818 1.69172 2.36497 2.36682 2.55476 3.08134 3.10792 3.77794 3.95370 4.01606 4.09558 4.13640 4.23506 4.32426 4.39158 4.49347 4.56239 4.61556 4.64136 4.71032 4.73152 4.82713 4.85530 4.94378 4.94853 5.04123 5.17691 5.23843 5.30313 5.41429 5.48089 5.49762 5.59707 5.66709 5.68391 5.81448 6.07775 6.29858 6.47221 6.61366 6.76839 6.85511 7.33705 7.33897 8.88895 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.015800 B = 0.004003 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.769859 B = 6993.021484 C = 8421.204995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.727 5.727 3 C 0.504 3.496 4 O -0.575 6.575 5 C -0.089 4.089 6 C -0.161 4.161 7 C -0.068 4.068 8 C -0.191 4.191 9 C -0.079 4.079 10 C -0.221 4.221 11 C 0.217 3.783 12 N -0.738 5.738 13 C 0.139 3.861 14 C -0.078 4.078 15 H 0.064 0.936 16 C -0.123 4.123 17 C -0.004 4.004 18 C -0.519 4.519 19 H 0.038 0.962 20 C 0.005 3.995 21 N -0.952 5.952 22 Si 0.944 3.056 23 H -0.270 1.270 24 H -0.286 1.286 25 H -0.246 1.246 26 H 0.050 0.950 27 H 0.109 0.891 28 H 0.038 0.962 29 H 0.419 0.581 30 H 0.136 0.864 31 H 0.106 0.894 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.116 0.884 36 H 0.397 0.603 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.042 0.958 41 H 0.043 0.957 42 H 0.022 0.978 43 H 0.017 0.983 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.272 -2.068 -25.247 25.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.380 5.380 3 C 0.291 3.709 4 O -0.454 6.454 5 C -0.129 4.129 6 C -0.166 4.166 7 C -0.087 4.087 8 C -0.211 4.211 9 C -0.098 4.098 10 C -0.244 4.244 11 C 0.113 3.887 12 N -0.368 5.368 13 C 0.014 3.986 14 C -0.097 4.097 15 H 0.082 0.918 16 C -0.180 4.180 17 C -0.042 4.042 18 C -0.557 4.557 19 H 0.056 0.944 20 C -0.192 4.192 21 N -0.593 5.593 22 Si 0.768 3.232 23 H -0.196 1.196 24 H -0.212 1.212 25 H -0.169 1.169 26 H 0.068 0.932 27 H 0.128 0.872 28 H 0.057 0.943 29 H 0.256 0.744 30 H 0.154 0.846 31 H 0.124 0.876 32 H 0.157 0.843 33 H 0.155 0.845 34 H 0.153 0.847 35 H 0.134 0.866 36 H 0.232 0.768 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.041 0.959 43 H 0.035 0.965 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.840 -1.228 -24.880 24.924 hybrid contribution -0.056 -0.121 1.064 1.072 sum 0.784 -1.349 -23.816 23.867 Atomic orbital electron populations 1.21598 0.79490 1.03944 1.00948 1.45778 1.08063 1.08835 1.75365 1.21171 0.91027 0.83537 0.75171 1.90726 1.71269 1.33123 1.50261 1.20520 0.90256 0.95273 1.06841 1.18970 1.08892 0.96611 0.92145 1.21021 0.95816 0.95073 0.96783 1.21115 1.06098 0.95517 0.98409 1.21136 0.96814 0.99928 0.91892 1.20816 1.09476 0.94649 0.99451 1.17880 0.92668 0.92186 0.85966 1.44728 1.72881 1.16121 1.03043 1.21305 1.00132 0.94665 0.82448 1.21060 0.96637 0.98419 0.93581 0.91790 1.21593 0.95633 1.00790 0.99977 1.19509 0.96555 0.95585 0.92560 1.21391 1.43687 0.99682 0.90943 0.94359 1.25938 0.95326 1.01780 0.96116 1.70054 1.51350 1.38301 0.99572 0.85752 0.79359 0.79967 0.78154 1.19571 1.21152 1.16897 0.93162 0.87227 0.94288 0.74437 0.84645 0.87581 0.84261 0.84473 0.84696 0.86614 0.76759 0.92135 0.93117 0.92972 0.93914 0.93794 0.95925 0.96484 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.28 10.70 127.77 1.37 2.65 16 2 N -0.73 -11.09 5.71 -484.52 -2.77 -13.86 16 3 C 0.50 11.30 7.82 87.66 0.69 11.98 16 4 O -0.58 -19.03 16.03 -3.02 -0.05 -19.08 16 5 C -0.09 -1.56 5.26 29.10 0.15 -1.41 16 6 C -0.16 -3.89 4.39 -19.73 -0.09 -3.98 16 7 C -0.07 -1.48 9.67 22.25 0.22 -1.27 16 8 C -0.19 -4.14 10.04 22.29 0.22 -3.92 16 9 C -0.08 -1.89 10.04 22.25 0.22 -1.66 16 10 C -0.22 -6.21 9.31 22.40 0.21 -6.01 16 11 C 0.22 6.18 6.63 38.21 0.25 6.44 16 12 N -0.74 -21.33 5.36 -339.42 -1.82 -23.15 16 13 C 0.14 4.47 4.30 86.38 0.37 4.84 16 14 C -0.08 -2.95 2.37 -10.79 -0.03 -2.97 16 15 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 16 C -0.12 -4.57 8.88 71.98 0.64 -3.93 16 17 C 0.00 -0.19 3.52 29.85 0.10 -0.09 16 18 C -0.52 -29.28 8.96 25.60 0.23 -29.05 16 19 H 0.04 2.36 7.30 -2.91 -0.02 2.34 16 20 C 0.00 0.29 5.47 84.66 0.46 0.75 16 21 N -0.95 -59.49 13.96 21.45 0.30 -59.19 16 22 Si 0.94 44.26 27.47 68.60 1.88 46.15 16 23 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 24 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 25 H -0.25 -10.64 6.54 99.48 0.65 -9.99 16 26 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 28 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.42 3.23 8.83 -92.71 -0.82 2.41 16 30 H 0.14 1.38 8.05 -2.38 -0.02 1.36 16 31 H 0.11 1.62 6.82 -2.39 -0.02 1.60 16 32 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 33 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 34 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 35 H 0.12 3.24 6.74 -2.91 -0.02 3.22 16 36 H 0.40 10.66 5.76 -92.71 -0.53 10.13 16 37 H 0.06 1.90 7.96 -2.38 -0.02 1.88 16 38 H 0.05 1.68 7.94 -2.39 -0.02 1.66 16 39 H 0.05 1.69 7.18 -2.39 -0.02 1.67 16 40 H 0.04 1.79 6.95 -2.39 -0.02 1.77 16 41 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.02 1.01 7.20 -2.38 -0.02 1.00 16 43 H 0.02 0.77 7.57 -2.39 -0.02 0.75 16 44 H 0.26 15.51 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -75.11 358.16 2.16 -72.95 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: -0.41 Total: 23.81 kcal Atomic # 6 Polarization: -32.65 SS G_CDS: 5.03 Total: -27.63 kcal Atomic # 7 Polarization: -91.92 SS G_CDS: -4.29 Total: -96.20 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.05 Total: -19.08 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.88 Total: 46.15 kcal Total: -75.11 2.16 -72.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119296449.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.552 kcal (2) G-P(sol) polarization free energy of solvation -75.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds