Wall clock time and date at job start Tue Mar 31 2020 07:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.46714 * 2 1 4 4 C 1.52996 * 109.46907 * 239.99639 * 2 1 3 5 5 C 1.53005 * 109.46821 * 174.99884 * 4 2 1 6 6 H 1.09000 * 109.47360 * 305.00433 * 5 4 2 7 7 C 1.53002 * 109.46982 * 185.00141 * 5 4 2 8 8 N 1.46506 * 109.46831 * 65.00511 * 5 4 2 9 9 C 1.34771 * 119.99635 * 205.00143 * 8 5 4 10 10 O 1.21284 * 120.00644 * 359.97438 * 9 8 5 11 11 C 1.50706 * 119.99767 * 180.02562 * 9 8 5 12 12 C 1.50701 * 109.47103 * 179.97438 * 11 9 8 13 13 C 1.38234 * 119.99909 * 269.72681 * 12 11 9 14 14 C 1.38239 * 120.00305 * 179.76763 * 13 12 11 15 15 C 1.38239 * 119.99310 * 0.50443 * 14 13 12 16 16 C 1.38230 * 120.00411 * 359.74384 * 15 14 13 17 17 C 1.38234 * 120.00281 * 89.99270 * 12 11 9 18 18 N 1.46500 * 109.46909 * 119.99931 * 2 1 3 19 19 C 1.36938 * 120.00064 * 275.00009 * 18 2 1 20 20 H 1.07998 * 119.99999 * 359.97438 * 19 18 2 21 21 C 1.38807 * 120.00105 * 180.02562 * 19 18 2 22 22 N 1.31622 * 119.99942 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00243 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47551 * 89.99409 * 23 21 19 25 25 H 1.48500 * 109.47359 * 209.99925 * 23 21 19 26 26 H 1.48505 * 109.46848 * 329.99606 * 23 21 19 27 27 H 1.09003 * 109.46711 * 300.00247 * 1 2 3 28 28 H 1.09002 * 109.46747 * 60.00164 * 1 2 3 29 29 H 1.08999 * 109.46714 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47445 * 55.00688 * 4 2 1 31 31 H 1.08998 * 109.47695 * 295.00287 * 4 2 1 32 32 H 1.08992 * 109.47060 * 60.00351 * 7 5 4 33 33 H 1.09004 * 109.46930 * 180.02562 * 7 5 4 34 34 H 1.09004 * 109.47059 * 299.99867 * 7 5 4 35 35 H 0.97000 * 119.99818 * 24.99870 * 8 5 4 36 36 H 1.08999 * 109.46712 * 299.99201 * 11 9 8 37 37 H 1.08994 * 109.47068 * 59.99956 * 11 9 8 38 38 H 1.08001 * 119.99902 * 359.97438 * 13 12 11 39 39 H 1.07990 * 120.00138 * 180.22800 * 14 13 12 40 40 H 1.08004 * 119.99633 * 179.72950 * 15 14 13 41 41 H 1.07996 * 120.00418 * 179.97438 * 16 15 14 42 42 H 1.08000 * 120.00019 * 0.02562 * 17 12 11 43 43 H 0.96999 * 120.00411 * 95.00042 * 18 2 1 44 44 H 0.97008 * 119.99792 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 1 3.8571 0.4358 -1.2677 7 6 4.0645 -1.2251 -2.6240 8 7 4.1537 -1.3343 -0.1823 9 6 5.3747 -0.9911 0.2734 10 8 5.9863 -0.0858 -0.2532 11 6 5.9807 -1.7331 1.4368 12 6 7.3395 -1.1593 1.7458 13 6 8.4647 -1.6790 1.1336 14 6 9.7107 -1.1495 1.4133 15 6 9.8324 -0.1071 2.3131 16 6 8.7078 0.4092 2.9292 17 6 7.4613 -0.1168 2.6454 18 7 2.0184 -0.6906 1.1962 19 6 2.1491 -0.0075 2.3758 20 1 1.8927 1.0405 2.4242 21 6 2.6123 -0.6617 3.5090 22 7 2.9253 -1.9388 3.4499 23 14 2.7900 0.2700 5.1183 24 1 1.5223 0.1779 5.8863 25 1 3.8950 -0.3226 5.9140 26 1 3.0940 1.6955 4.8340 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6055 -0.2618 -2.1370 31 1 1.7517 -1.7716 -1.2056 32 1 3.6265 -0.6888 -3.4656 33 1 5.1509 -1.1486 -2.6697 34 1 3.7723 -2.2742 -2.6698 35 1 3.6647 -2.0585 0.2387 36 1 5.3355 -1.6300 2.3092 37 1 6.0816 -2.7880 1.1821 38 1 8.3700 -2.4965 0.4343 39 1 10.5892 -1.5530 0.9323 40 1 10.8063 0.3037 2.5350 41 1 8.8030 1.2233 3.6324 42 1 6.5828 0.2861 3.1273 43 1 2.2491 -1.6317 1.1527 44 1 3.2486 -2.3960 4.2420 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134765337.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:38 Heat of formation + Delta-G solvation = -10.904900 kcal Electronic energy + Delta-G solvation = -23991.099246 eV Core-core repulsion = 20715.189076 eV Total energy + Delta-G solvation = -3275.910170 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 6.46 seconds Orbital eigenvalues (eV) -39.54996 -38.46016 -36.68690 -34.14335 -32.52746 -32.10842 -30.54377 -30.51117 -28.57518 -26.95889 -26.28205 -23.67354 -22.22393 -21.97985 -20.58266 -20.19842 -19.37001 -17.19498 -16.55675 -16.28780 -15.68230 -15.06906 -14.92631 -14.62270 -14.09992 -13.78182 -13.72692 -13.25006 -13.06866 -12.94754 -12.78226 -12.54746 -12.15266 -12.11345 -11.86115 -11.73595 -11.64894 -11.35768 -10.97481 -10.87091 -10.74811 -10.71280 -10.58967 -10.33821 -10.25704 -9.90109 -9.69469 -9.17022 -8.97145 -8.56584 -8.31185 -8.27629 -6.96201 -5.82875 -3.08515 1.70061 1.76203 3.39612 3.44573 3.47081 3.48282 3.87646 4.26319 4.56519 5.12529 5.14035 5.18818 5.29472 5.42340 5.43695 5.49165 5.54307 5.68676 5.70595 5.77596 5.85070 5.91099 6.00158 6.01011 6.03715 6.16222 6.23234 6.25490 6.38157 6.39594 6.44534 6.54712 6.58286 6.62601 6.76593 6.82918 6.86167 7.05680 7.06072 7.27086 7.35874 7.68124 8.29017 8.37610 9.02948 9.48328 10.02846 10.38791 11.39487 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.012047 B = 0.006755 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.644596 B = 4144.377448 C = 5967.028707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.169 3.831 3 H 0.047 0.953 4 C -0.133 4.133 5 C 0.150 3.850 6 H 0.081 0.919 7 C -0.161 4.161 8 N -0.699 5.699 9 C 0.533 3.467 10 O -0.560 6.560 11 C -0.111 4.111 12 C -0.047 4.047 13 C -0.111 4.111 14 C -0.125 4.125 15 C -0.131 4.131 16 C -0.122 4.122 17 C -0.101 4.101 18 N -0.716 5.716 19 C -0.224 4.224 20 H 0.067 0.933 21 C -0.011 4.011 22 N -0.934 5.934 23 Si 0.896 3.104 24 H -0.292 1.292 25 H -0.291 1.291 26 H -0.284 1.284 27 H 0.052 0.948 28 H 0.035 0.965 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.404 0.596 36 H 0.130 0.870 37 H 0.090 0.910 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.123 0.877 43 H 0.378 0.622 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.079 -1.335 -7.332 9.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.059 3.941 3 H 0.065 0.935 4 C -0.172 4.172 5 C 0.045 3.955 6 H 0.099 0.901 7 C -0.220 4.220 8 N -0.351 5.351 9 C 0.320 3.680 10 O -0.439 6.439 11 C -0.151 4.151 12 C -0.047 4.047 13 C -0.130 4.130 14 C -0.143 4.143 15 C -0.149 4.149 16 C -0.140 4.140 17 C -0.119 4.119 18 N -0.359 5.359 19 C -0.355 4.355 20 H 0.085 0.915 21 C -0.207 4.207 22 N -0.584 5.584 23 Si 0.727 3.273 24 H -0.220 1.220 25 H -0.217 1.217 26 H -0.210 1.210 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.242 0.758 36 H 0.147 0.853 37 H 0.109 0.891 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.141 0.859 43 H 0.213 0.787 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.513 -0.570 -7.574 10.005 hybrid contribution -0.256 -0.124 1.249 1.281 sum 6.257 -0.694 -6.325 8.924 Atomic orbital electron populations 1.22424 0.99352 1.00697 0.99887 1.20281 0.91617 0.95721 0.86437 0.93482 1.22198 0.94135 1.01544 0.99283 1.20764 0.92390 0.97275 0.85078 0.90114 1.22203 1.01698 1.00733 0.97365 1.45956 1.17913 1.37683 1.33573 1.20208 0.81153 0.83322 0.83309 1.90629 1.62174 1.31262 1.59835 1.20775 0.94480 0.99529 1.00286 1.19445 0.94042 0.95643 0.95614 1.20955 0.92339 1.00281 0.99381 1.20994 0.97084 0.97404 0.98833 1.21019 0.98185 0.97591 0.98106 1.21076 0.92720 0.99985 1.00199 1.21130 0.97618 0.95638 0.97491 1.42455 1.77932 1.10174 1.05344 1.19210 1.35298 0.93767 0.87267 0.91541 1.24562 1.02633 0.95965 0.97500 1.69589 1.51790 1.08280 1.28751 0.86352 0.77347 0.79044 0.84527 1.21978 1.21697 1.20970 0.92911 0.94616 0.93615 0.90968 0.91785 0.92298 0.92499 0.92896 0.75814 0.85250 0.89124 0.86650 0.86648 0.86726 0.86486 0.85927 0.78670 0.93603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.49 37.16 0.35 -2.43 16 2 C 0.17 3.11 2.89 -67.93 -0.20 2.92 16 3 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 4 C -0.13 -1.99 4.43 -26.73 -0.12 -2.10 16 5 C 0.15 2.43 2.57 -67.92 -0.17 2.25 16 6 H 0.08 1.50 7.58 -51.93 -0.39 1.11 16 7 C -0.16 -2.21 9.48 37.16 0.35 -1.85 16 8 N -0.70 -12.43 3.80 -53.80 -0.20 -12.63 16 9 C 0.53 10.49 7.79 -10.98 -0.09 10.40 16 10 O -0.56 -12.55 15.70 5.55 0.09 -12.46 16 11 C -0.11 -2.03 5.83 -29.03 -0.17 -2.20 16 12 C -0.05 -0.84 4.37 -104.62 -0.46 -1.30 16 13 C -0.11 -1.76 9.70 -39.58 -0.38 -2.15 16 14 C -0.13 -1.78 10.05 -39.58 -0.40 -2.18 16 15 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 16 C -0.12 -1.90 10.05 -39.58 -0.40 -2.30 16 17 C -0.10 -1.83 9.70 -39.58 -0.38 -2.21 16 18 N -0.72 -15.78 3.84 -53.42 -0.21 -15.98 16 19 C -0.22 -5.70 9.93 -15.06 -0.15 -5.85 16 20 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 21 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 22 N -0.93 -24.43 12.78 55.49 0.71 -23.72 16 23 Si 0.90 21.40 29.55 -169.99 -5.02 16.38 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.40 7.23 6.51 -40.82 -0.27 6.96 16 36 H 0.13 2.69 7.81 -51.93 -0.41 2.29 16 37 H 0.09 1.42 8.08 -51.93 -0.42 1.00 16 38 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.11 1.29 8.06 -52.48 -0.42 0.87 16 41 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 42 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 43 H 0.38 8.50 5.70 -40.82 -0.23 8.27 16 44 H 0.25 6.63 8.31 -40.82 -0.34 6.30 16 LS Contribution 364.15 15.07 5.49 5.49 Total: -1.00 -28.54 364.15 -9.03 -37.57 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: -7.18 Total: 16.99 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -2.70 Total: -11.64 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: 0.30 Total: -52.33 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.09 Total: -12.46 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.54 -9.03 -37.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134765337.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.668 kcal (2) G-P(sol) polarization free energy of solvation -28.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.46 seconds