Wall clock time and date at job start Tue Mar 31 2020 07:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.46714 * 2 1 4 4 C 1.52996 * 109.46907 * 239.99639 * 2 1 3 5 5 C 1.53005 * 109.46821 * 174.99884 * 4 2 1 6 6 H 1.09000 * 109.47360 * 305.00433 * 5 4 2 7 7 C 1.53002 * 109.46982 * 185.00141 * 5 4 2 8 8 N 1.46506 * 109.46831 * 65.00511 * 5 4 2 9 9 C 1.34771 * 119.99635 * 205.00143 * 8 5 4 10 10 O 1.21284 * 120.00644 * 359.97438 * 9 8 5 11 11 C 1.50706 * 119.99767 * 180.02562 * 9 8 5 12 12 C 1.50701 * 109.47103 * 179.97438 * 11 9 8 13 13 C 1.38234 * 119.99909 * 269.72681 * 12 11 9 14 14 C 1.38239 * 120.00305 * 179.76763 * 13 12 11 15 15 C 1.38239 * 119.99310 * 0.50443 * 14 13 12 16 16 C 1.38230 * 120.00411 * 359.74384 * 15 14 13 17 17 C 1.38234 * 120.00281 * 89.99270 * 12 11 9 18 18 N 1.46500 * 109.46909 * 119.99931 * 2 1 3 19 19 C 1.36938 * 120.00064 * 275.00009 * 18 2 1 20 20 H 1.07998 * 119.99999 * 359.97438 * 19 18 2 21 21 C 1.38807 * 120.00105 * 180.02562 * 19 18 2 22 22 N 1.31622 * 119.99942 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00243 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47551 * 89.99409 * 23 21 19 25 25 H 1.48500 * 109.47359 * 209.99925 * 23 21 19 26 26 H 1.48505 * 109.46848 * 329.99606 * 23 21 19 27 27 H 1.09003 * 109.46711 * 300.00247 * 1 2 3 28 28 H 1.09002 * 109.46747 * 60.00164 * 1 2 3 29 29 H 1.08999 * 109.46714 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47445 * 55.00688 * 4 2 1 31 31 H 1.08998 * 109.47695 * 295.00287 * 4 2 1 32 32 H 1.08992 * 109.47060 * 60.00351 * 7 5 4 33 33 H 1.09004 * 109.46930 * 180.02562 * 7 5 4 34 34 H 1.09004 * 109.47059 * 299.99867 * 7 5 4 35 35 H 0.97000 * 119.99818 * 24.99870 * 8 5 4 36 36 H 1.08999 * 109.46712 * 299.99201 * 11 9 8 37 37 H 1.08994 * 109.47068 * 59.99956 * 11 9 8 38 38 H 1.08001 * 119.99902 * 359.97438 * 13 12 11 39 39 H 1.07990 * 120.00138 * 180.22800 * 14 13 12 40 40 H 1.08004 * 119.99633 * 179.72950 * 15 14 13 41 41 H 1.07996 * 120.00418 * 179.97438 * 16 15 14 42 42 H 1.08000 * 120.00019 * 0.02562 * 17 12 11 43 43 H 0.96999 * 120.00411 * 95.00042 * 18 2 1 44 44 H 0.97008 * 119.99792 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 1 3.8571 0.4358 -1.2677 7 6 4.0645 -1.2251 -2.6240 8 7 4.1537 -1.3343 -0.1823 9 6 5.3747 -0.9911 0.2734 10 8 5.9863 -0.0858 -0.2532 11 6 5.9807 -1.7331 1.4368 12 6 7.3395 -1.1593 1.7458 13 6 8.4647 -1.6790 1.1336 14 6 9.7107 -1.1495 1.4133 15 6 9.8324 -0.1071 2.3131 16 6 8.7078 0.4092 2.9292 17 6 7.4613 -0.1168 2.6454 18 7 2.0184 -0.6906 1.1962 19 6 2.1491 -0.0075 2.3758 20 1 1.8927 1.0405 2.4242 21 6 2.6123 -0.6617 3.5090 22 7 2.9253 -1.9388 3.4499 23 14 2.7900 0.2700 5.1183 24 1 1.5223 0.1779 5.8863 25 1 3.8950 -0.3226 5.9140 26 1 3.0940 1.6955 4.8340 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6055 -0.2618 -2.1370 31 1 1.7517 -1.7716 -1.2056 32 1 3.6265 -0.6888 -3.4656 33 1 5.1509 -1.1486 -2.6697 34 1 3.7723 -2.2742 -2.6698 35 1 3.6647 -2.0585 0.2387 36 1 5.3355 -1.6300 2.3092 37 1 6.0816 -2.7880 1.1821 38 1 8.3700 -2.4965 0.4343 39 1 10.5892 -1.5530 0.9323 40 1 10.8063 0.3037 2.5350 41 1 8.8030 1.2233 3.6324 42 1 6.5828 0.2861 3.1273 43 1 2.2491 -1.6317 1.1527 44 1 3.2486 -2.3960 4.2420 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134765337.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:35 Heat of formation + Delta-G solvation = -25.856041 kcal Electronic energy + Delta-G solvation = -23991.747576 eV Core-core repulsion = 20715.189076 eV Total energy + Delta-G solvation = -3276.558501 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -40.98340 -39.74957 -38.21325 -35.75876 -34.09932 -33.64453 -31.96731 -31.75003 -30.25225 -28.27704 -27.56323 -25.56890 -23.43816 -23.29601 -21.90832 -21.66429 -20.86965 -19.10221 -17.89991 -17.69662 -17.05672 -16.64608 -16.43036 -15.93761 -15.61769 -15.45969 -15.28529 -14.77283 -14.31971 -14.26624 -14.19512 -13.89830 -13.56364 -13.37474 -13.29115 -13.21767 -12.88482 -12.80565 -12.74674 -12.59358 -12.27650 -12.15292 -11.94718 -11.84135 -11.70232 -11.59527 -11.39916 -10.87470 -10.72629 -9.79401 -9.76820 -9.56961 -8.81484 -7.85513 -5.07397 0.47561 0.53438 1.43599 1.47940 1.51691 1.89303 2.50989 2.59802 2.99750 3.47771 3.81665 3.85438 3.97805 4.01942 4.18061 4.18977 4.27453 4.29631 4.40573 4.45845 4.58207 4.66256 4.71153 4.76958 4.84141 4.87953 4.89698 4.93953 5.08684 5.14101 5.15397 5.17790 5.22067 5.37984 5.42978 5.58068 5.60236 5.62057 5.63913 5.77408 5.85355 6.16310 6.37349 6.80232 7.46324 7.51084 8.18823 8.46556 9.35443 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.012047 B = 0.006755 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.644596 B = 4144.377448 C = 5967.028707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.162 3.838 3 H 0.026 0.974 4 C -0.119 4.119 5 C 0.146 3.854 6 H 0.051 0.949 7 C -0.150 4.150 8 N -0.693 5.693 9 C 0.528 3.472 10 O -0.592 6.592 11 C -0.103 4.103 12 C -0.070 4.070 13 C -0.121 4.121 14 C -0.121 4.121 15 C -0.128 4.128 16 C -0.129 4.129 17 C -0.134 4.134 18 N -0.719 5.719 19 C -0.226 4.226 20 H 0.054 0.946 21 C -0.049 4.049 22 N -0.942 5.942 23 Si 0.937 3.063 24 H -0.294 1.294 25 H -0.295 1.295 26 H -0.288 1.288 27 H 0.028 0.972 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.107 0.893 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.037 0.963 34 H 0.069 0.931 35 H 0.405 0.595 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.133 0.867 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.134 0.866 42 H 0.095 0.905 43 H 0.376 0.624 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.837 -1.990 -9.078 11.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.053 3.947 3 H 0.044 0.956 4 C -0.157 4.157 5 C 0.041 3.959 6 H 0.069 0.931 7 C -0.208 4.208 8 N -0.344 5.344 9 C 0.316 3.684 10 O -0.474 6.474 11 C -0.143 4.143 12 C -0.071 4.071 13 C -0.139 4.139 14 C -0.139 4.139 15 C -0.145 4.145 16 C -0.147 4.147 17 C -0.152 4.152 18 N -0.362 5.362 19 C -0.358 4.358 20 H 0.072 0.928 21 C -0.243 4.243 22 N -0.593 5.593 23 Si 0.769 3.231 24 H -0.222 1.222 25 H -0.222 1.222 26 H -0.214 1.214 27 H 0.047 0.953 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.125 0.875 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.057 0.943 34 H 0.088 0.912 35 H 0.242 0.758 36 H 0.117 0.883 37 H 0.131 0.869 38 H 0.151 0.849 39 H 0.170 0.830 40 H 0.169 0.831 41 H 0.152 0.848 42 H 0.113 0.887 43 H 0.211 0.789 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.232 -1.222 -9.345 11.880 hybrid contribution -0.487 0.140 1.756 1.828 sum 6.745 -1.082 -7.589 10.211 Atomic orbital electron populations 1.22273 0.97667 1.01037 1.00363 1.20487 0.92719 0.94806 0.86666 0.95573 1.22114 0.92907 1.02113 0.98581 1.20907 0.93358 0.95752 0.85858 0.93084 1.22090 1.00522 1.01876 0.96343 1.46010 1.17247 1.37371 1.33777 1.20477 0.81550 0.82988 0.83429 1.90594 1.63135 1.32630 1.61036 1.20668 0.94466 1.00750 0.98382 1.19541 0.94507 0.96359 0.96645 1.21223 0.92363 1.00825 0.99469 1.21458 0.97566 0.96729 0.98119 1.21456 0.99046 0.97018 0.97005 1.21342 0.92305 1.00397 1.00665 1.21127 0.98009 0.97100 0.98990 1.42498 1.78124 1.10010 1.05556 1.19286 1.34481 0.93372 0.88670 0.92832 1.24955 1.03495 0.96693 0.99172 1.69652 1.52414 1.08592 1.28621 0.85700 0.76760 0.78030 0.82607 1.22173 1.22160 1.21407 0.95296 0.91298 0.93257 0.87512 0.90442 0.89778 0.94337 0.91209 0.75804 0.88267 0.86946 0.84936 0.83049 0.83135 0.84797 0.88694 0.78926 0.94189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.96 9.49 71.99 0.68 -4.28 16 2 C 0.16 5.84 2.89 44.99 0.13 5.97 16 3 H 0.03 1.05 8.08 -2.39 -0.02 1.04 16 4 C -0.12 -3.27 4.43 30.59 0.14 -3.14 16 5 C 0.15 4.59 2.57 44.99 0.12 4.71 16 6 H 0.05 1.93 7.58 -2.39 -0.02 1.91 16 7 C -0.15 -3.77 9.48 71.98 0.68 -3.08 16 8 N -0.69 -24.82 3.80 -442.51 -1.68 -26.50 16 9 C 0.53 21.40 7.79 87.66 0.68 22.08 16 10 O -0.59 -27.40 15.70 -3.04 -0.05 -27.44 16 11 C -0.10 -3.90 5.83 29.10 0.17 -3.73 16 12 C -0.07 -2.58 4.37 -19.87 -0.09 -2.66 16 13 C -0.12 -3.70 9.70 22.27 0.22 -3.48 16 14 C -0.12 -3.12 10.05 22.27 0.22 -2.90 16 15 C -0.13 -3.30 10.05 22.27 0.22 -3.08 16 16 C -0.13 -4.01 10.05 22.27 0.22 -3.78 16 17 C -0.13 -5.09 9.70 22.27 0.22 -4.88 16 18 N -0.72 -32.00 3.84 -322.94 -1.24 -33.24 16 19 C -0.23 -11.78 9.93 84.03 0.83 -10.95 16 20 H 0.05 2.89 7.83 -2.91 -0.02 2.87 16 21 C -0.05 -2.63 5.50 84.86 0.47 -2.16 16 22 N -0.94 -50.37 12.78 21.65 0.28 -50.09 16 23 Si 0.94 45.26 29.55 68.60 2.03 47.29 16 24 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 25 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 26 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 27 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.40 14.50 6.51 -92.71 -0.60 13.90 16 36 H 0.10 4.39 7.81 -2.39 -0.02 4.37 16 37 H 0.11 3.59 8.08 -2.39 -0.02 3.57 16 38 H 0.13 3.47 8.06 -2.91 -0.02 3.45 16 39 H 0.15 2.79 8.06 -2.92 -0.02 2.77 16 40 H 0.15 2.79 8.06 -2.91 -0.02 2.76 16 41 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 42 H 0.09 3.98 8.06 -2.91 -0.02 3.96 16 43 H 0.38 16.99 5.70 -92.71 -0.53 16.46 16 44 H 0.25 13.30 8.31 -92.70 -0.77 12.53 16 Total: -1.00 -63.94 364.15 4.10 -59.85 By element: Atomic # 1 Polarization: 45.67 SS G_CDS: -0.15 Total: 45.52 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: 4.92 Total: -15.37 kcal Atomic # 7 Polarization: -107.19 SS G_CDS: -2.65 Total: -109.84 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.05 Total: -27.44 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -63.94 4.10 -59.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134765337.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.991 kcal (2) G-P(sol) polarization free energy of solvation -63.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.52 seconds