Wall clock time and date at job start Tue Mar 31 2020 07:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46444 * 2 1 4 4 C 1.52995 * 109.47167 * 239.99816 * 2 1 3 5 5 C 1.53002 * 109.47091 * 174.99692 * 4 2 1 6 6 H 1.09003 * 109.46880 * 305.00269 * 5 4 2 7 7 C 1.53003 * 109.46978 * 184.99968 * 5 4 2 8 8 N 1.46498 * 109.46924 * 65.00321 * 5 4 2 9 9 C 1.36936 * 120.00056 * 205.00388 * 8 5 4 10 10 H 1.08006 * 119.99732 * 359.97438 * 9 8 5 11 11 C 1.38814 * 120.00144 * 179.97438 * 9 8 5 12 12 N 1.31616 * 119.99855 * 179.97438 * 11 9 8 13 13 Si 1.86792 * 119.99862 * 359.97438 * 11 9 8 14 14 H 1.48506 * 109.47180 * 90.00379 * 13 11 9 15 15 H 1.48509 * 109.47089 * 209.99966 * 13 11 9 16 16 H 1.48501 * 109.47276 * 330.00034 * 13 11 9 17 17 N 1.46492 * 109.47106 * 119.99646 * 2 1 3 18 18 C 1.34774 * 120.00345 * 275.00475 * 17 2 1 19 19 O 1.21286 * 119.99717 * 359.97438 * 18 17 2 20 20 C 1.50701 * 120.00373 * 180.02562 * 18 17 2 21 21 C 1.50701 * 109.47148 * 179.97438 * 20 18 17 22 22 C 1.38235 * 119.99808 * 89.99755 * 21 20 18 23 23 C 1.38243 * 119.99602 * 179.97438 * 22 21 20 24 24 C 1.38231 * 120.00070 * 0.07188 * 23 22 21 25 25 C 1.38234 * 119.99892 * 359.90902 * 24 23 22 26 26 C 1.38230 * 119.99865 * 269.97500 * 21 20 18 27 27 H 1.09003 * 109.46859 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47466 * 300.00012 * 1 2 3 29 29 H 1.09002 * 109.47270 * 60.00201 * 1 2 3 30 30 H 1.08995 * 109.47335 * 294.99856 * 4 2 1 31 31 H 1.09011 * 109.47375 * 54.99963 * 4 2 1 32 32 H 1.08996 * 109.46907 * 60.00520 * 7 5 4 33 33 H 1.09007 * 109.46619 * 180.02562 * 7 5 4 34 34 H 1.08996 * 109.46927 * 299.99847 * 7 5 4 35 35 H 0.96999 * 119.99900 * 24.99490 * 8 5 4 36 36 H 0.96998 * 120.00225 * 180.02562 * 12 11 9 37 37 H 0.97000 * 119.99885 * 95.00081 * 17 2 1 38 38 H 1.08993 * 109.47576 * 59.99137 * 20 18 17 39 39 H 1.09001 * 109.46592 * 299.99075 * 20 18 17 40 40 H 1.08000 * 120.00616 * 359.70324 * 22 21 20 41 41 H 1.08001 * 119.99556 * 179.97438 * 23 22 21 42 42 H 1.07997 * 119.99633 * 179.97438 * 24 23 22 43 43 H 1.07999 * 119.99751 * 180.02562 * 25 24 23 44 44 H 1.08001 * 120.00371 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6132 -1.3136 6 1 3.8570 0.4359 -1.2677 7 6 4.0645 -1.2250 -2.6240 8 7 4.1537 -1.3341 -0.1824 9 6 5.3943 -0.9854 0.2807 10 1 5.9389 -0.1792 -0.1883 11 6 5.9521 -1.6681 1.3530 12 7 7.1447 -1.3333 1.7977 13 14 5.0100 -3.0620 2.1646 14 1 5.3468 -4.3435 1.4940 15 1 5.3828 -3.1416 3.5999 16 1 3.5516 -2.8092 2.0452 17 7 2.0184 -0.6905 1.1961 18 6 2.1470 -0.0182 2.3571 19 8 1.8589 1.1587 2.4114 20 6 2.6499 -0.7284 3.5875 21 6 2.7010 0.2401 4.7409 22 6 1.6001 0.3952 5.5625 23 6 1.6472 1.2832 6.6209 24 6 2.7945 2.0172 6.8568 25 6 3.8955 1.8619 6.0354 26 6 3.8488 0.9731 4.9777 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.7518 -1.7715 -1.2055 31 1 1.6054 -0.2618 -2.1370 32 1 3.6264 -0.6887 -3.4657 33 1 5.1510 -1.1484 -2.6697 34 1 3.7724 -2.2741 -2.6698 35 1 3.6648 -2.0583 0.2387 36 1 7.5347 -1.8105 2.5468 37 1 2.2491 -1.6317 1.1526 38 1 3.6491 -1.1202 3.3980 39 1 1.9776 -1.5506 3.8326 40 1 0.7017 -0.1742 5.3749 41 1 0.7869 1.4046 7.2625 42 1 2.8311 2.7113 7.6834 43 1 4.7920 2.4350 6.2199 44 1 4.7089 0.8520 4.3358 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134765339.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:01 Heat of formation + Delta-G solvation = -2.824040 kcal Electronic energy + Delta-G solvation = -24113.746030 eV Core-core repulsion = 20838.186271 eV Total energy + Delta-G solvation = -3275.559758 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.76125 -38.59448 -36.88977 -34.30747 -32.72237 -32.18785 -30.81840 -30.61015 -29.14090 -27.18272 -26.39588 -23.38404 -22.30302 -22.10642 -20.68549 -20.53175 -19.53179 -17.59885 -16.69625 -16.57642 -15.91783 -15.24302 -14.96187 -14.71262 -14.37051 -14.13752 -13.59547 -13.35794 -13.16124 -13.06885 -12.97615 -12.54057 -12.49005 -12.23964 -12.05457 -12.03430 -11.78932 -11.65261 -11.08791 -11.01498 -10.84557 -10.75949 -10.65830 -10.52625 -10.24929 -10.00853 -9.64104 -9.37833 -9.03344 -8.63037 -8.49811 -8.42130 -7.28896 -5.81176 -3.15408 1.60292 1.69716 3.06736 3.17111 3.28340 3.34902 3.68047 4.15065 4.47155 4.95753 4.97525 5.08504 5.19002 5.23238 5.31959 5.35829 5.44163 5.48674 5.54108 5.56093 5.74357 5.75393 5.85995 5.88312 5.88470 5.94138 6.04210 6.13590 6.24988 6.27718 6.33719 6.33970 6.39709 6.48137 6.68679 6.77481 6.78157 6.92705 6.96416 7.04262 7.27795 7.94449 8.03074 8.37117 8.78056 9.14408 9.86202 10.06588 11.37670 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.013863 B = 0.006577 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.265920 B = 4255.973309 C = 5534.342054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.148 3.852 3 H 0.086 0.914 4 C -0.136 4.136 5 C 0.175 3.825 6 H 0.056 0.944 7 C -0.164 4.164 8 N -0.741 5.741 9 C -0.231 4.231 10 H 0.090 0.910 11 C 0.003 3.997 12 N -0.932 5.932 13 Si 0.875 3.125 14 H -0.287 1.287 15 H -0.288 1.288 16 H -0.280 1.280 17 N -0.707 5.707 18 C 0.530 3.470 19 O -0.545 6.545 20 C -0.111 4.111 21 C -0.056 4.056 22 C -0.110 4.110 23 C -0.126 4.126 24 C -0.127 4.127 25 C -0.119 4.119 26 C -0.098 4.098 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.039 0.961 33 H 0.057 0.943 34 H 0.044 0.956 35 H 0.354 0.646 36 H 0.259 0.741 37 H 0.397 0.603 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.121 0.879 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.988 0.800 2.536 13.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 H 0.104 0.896 4 C -0.175 4.175 5 C 0.066 3.934 6 H 0.074 0.926 7 C -0.224 4.224 8 N -0.386 5.386 9 C -0.361 4.361 10 H 0.107 0.893 11 C -0.192 4.192 12 N -0.580 5.580 13 Si 0.708 3.292 14 H -0.215 1.215 15 H -0.214 1.214 16 H -0.208 1.208 17 N -0.360 5.360 18 C 0.317 3.683 19 O -0.422 6.422 20 C -0.151 4.151 21 C -0.057 4.057 22 C -0.128 4.128 23 C -0.144 4.144 24 C -0.145 4.145 25 C -0.137 4.137 26 C -0.116 4.116 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.187 0.813 36 H 0.069 0.931 37 H 0.235 0.765 38 H 0.124 0.876 39 H 0.111 0.889 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.139 0.861 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.962 1.754 2.605 13.337 hybrid contribution -0.303 -1.647 0.541 1.760 sum -13.266 0.108 3.146 13.634 Atomic orbital electron populations 1.22202 0.96235 1.01513 1.02064 1.20835 0.92533 0.97938 0.84352 0.89561 1.22244 0.97783 1.00513 0.96911 1.20250 0.89445 0.96209 0.87511 0.92553 1.22394 1.02014 1.00149 0.97858 1.42823 1.19263 1.40104 1.36380 1.19077 0.91483 1.14486 1.11050 0.89262 1.24632 0.96541 0.99206 0.98851 1.69674 1.15926 1.43545 1.28895 0.86883 0.78679 0.84050 0.79617 1.21475 1.21431 1.20796 1.46133 1.66739 1.14053 1.09096 1.20139 0.76849 0.87109 0.84243 1.90652 1.50529 1.15742 1.85316 1.20846 1.04411 0.97824 0.91986 1.19323 0.94206 0.97090 0.95034 1.20918 0.97425 0.99064 0.95381 1.20993 0.97997 0.97258 0.98117 1.21066 0.93739 0.99897 0.99796 1.21110 0.98516 0.98586 0.95483 1.21208 0.98104 0.95169 0.97093 0.92951 0.92385 0.92007 0.91928 0.90400 0.94217 0.92385 0.93730 0.81252 0.93103 0.76537 0.87589 0.88860 0.86649 0.86518 0.86535 0.86142 0.85380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.48 37.16 0.35 -1.72 16 2 C 0.15 2.28 2.57 -67.93 -0.17 2.11 16 3 H 0.09 1.53 7.58 -51.93 -0.39 1.14 16 4 C -0.14 -1.90 4.43 -26.73 -0.12 -2.02 16 5 C 0.17 3.10 2.89 -67.93 -0.20 2.91 16 6 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 7 C -0.16 -2.68 9.49 37.16 0.35 -2.33 16 8 N -0.74 -15.75 3.65 -53.42 -0.19 -15.94 16 9 C -0.23 -6.07 10.41 -15.06 -0.16 -6.22 16 10 H 0.09 2.61 8.06 -52.48 -0.42 2.18 16 11 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 12 N -0.93 -27.95 13.97 55.49 0.78 -27.18 16 13 Si 0.88 20.09 25.12 -169.99 -4.27 15.82 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.28 -5.44 4.58 56.52 0.26 -5.19 16 17 N -0.71 -12.11 3.80 -53.81 -0.20 -12.32 16 18 C 0.53 10.13 7.79 -10.99 -0.09 10.05 16 19 O -0.54 -11.86 15.70 5.55 0.09 -11.78 16 20 C -0.11 -1.97 5.38 -29.03 -0.16 -2.13 16 21 C -0.06 -0.99 4.37 -104.63 -0.46 -1.45 16 22 C -0.11 -1.68 9.70 -39.58 -0.38 -2.07 16 23 C -0.13 -1.73 10.05 -39.58 -0.40 -2.13 16 24 C -0.13 -1.75 10.05 -39.59 -0.40 -2.15 16 25 C -0.12 -1.84 10.05 -39.58 -0.40 -2.24 16 26 C -0.10 -1.77 9.70 -39.59 -0.38 -2.15 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.35 7.18 3.78 -40.82 -0.15 7.03 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.40 6.65 5.10 -40.82 -0.21 6.44 16 38 H 0.11 2.09 4.92 -51.93 -0.26 1.84 16 39 H 0.09 1.37 8.09 -51.93 -0.42 0.95 16 40 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 41 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 42 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 43 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 44 H 0.13 2.50 8.06 -52.49 -0.42 2.08 16 LS Contribution 352.24 15.07 5.31 5.31 Total: -1.00 -31.19 352.24 -8.24 -39.43 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: -7.05 Total: 18.20 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -2.70 Total: -11.55 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: 0.38 Total: -55.44 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.09 Total: -11.78 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.27 Total: 15.82 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.19 -8.24 -39.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134765339.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.610 kcal (2) G-P(sol) polarization free energy of solvation -31.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds