Wall clock time and date at job start Tue Mar 31 2020 07:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46444 * 2 1 4 4 C 1.52995 * 109.47167 * 239.99816 * 2 1 3 5 5 C 1.53002 * 109.47091 * 174.99692 * 4 2 1 6 6 H 1.09003 * 109.46880 * 305.00269 * 5 4 2 7 7 C 1.53003 * 109.46978 * 184.99968 * 5 4 2 8 8 N 1.46498 * 109.46924 * 65.00321 * 5 4 2 9 9 C 1.36936 * 120.00056 * 205.00388 * 8 5 4 10 10 H 1.08006 * 119.99732 * 359.97438 * 9 8 5 11 11 C 1.38814 * 120.00144 * 179.97438 * 9 8 5 12 12 N 1.31616 * 119.99855 * 179.97438 * 11 9 8 13 13 Si 1.86792 * 119.99862 * 359.97438 * 11 9 8 14 14 H 1.48506 * 109.47180 * 90.00379 * 13 11 9 15 15 H 1.48509 * 109.47089 * 209.99966 * 13 11 9 16 16 H 1.48501 * 109.47276 * 330.00034 * 13 11 9 17 17 N 1.46492 * 109.47106 * 119.99646 * 2 1 3 18 18 C 1.34774 * 120.00345 * 275.00475 * 17 2 1 19 19 O 1.21286 * 119.99717 * 359.97438 * 18 17 2 20 20 C 1.50701 * 120.00373 * 180.02562 * 18 17 2 21 21 C 1.50701 * 109.47148 * 179.97438 * 20 18 17 22 22 C 1.38235 * 119.99808 * 89.99755 * 21 20 18 23 23 C 1.38243 * 119.99602 * 179.97438 * 22 21 20 24 24 C 1.38231 * 120.00070 * 0.07188 * 23 22 21 25 25 C 1.38234 * 119.99892 * 359.90902 * 24 23 22 26 26 C 1.38230 * 119.99865 * 269.97500 * 21 20 18 27 27 H 1.09003 * 109.46859 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47466 * 300.00012 * 1 2 3 29 29 H 1.09002 * 109.47270 * 60.00201 * 1 2 3 30 30 H 1.08995 * 109.47335 * 294.99856 * 4 2 1 31 31 H 1.09011 * 109.47375 * 54.99963 * 4 2 1 32 32 H 1.08996 * 109.46907 * 60.00520 * 7 5 4 33 33 H 1.09007 * 109.46619 * 180.02562 * 7 5 4 34 34 H 1.08996 * 109.46927 * 299.99847 * 7 5 4 35 35 H 0.96999 * 119.99900 * 24.99490 * 8 5 4 36 36 H 0.96998 * 120.00225 * 180.02562 * 12 11 9 37 37 H 0.97000 * 119.99885 * 95.00081 * 17 2 1 38 38 H 1.08993 * 109.47576 * 59.99137 * 20 18 17 39 39 H 1.09001 * 109.46592 * 299.99075 * 20 18 17 40 40 H 1.08000 * 120.00616 * 359.70324 * 22 21 20 41 41 H 1.08001 * 119.99556 * 179.97438 * 23 22 21 42 42 H 1.07997 * 119.99633 * 179.97438 * 24 23 22 43 43 H 1.07999 * 119.99751 * 180.02562 * 25 24 23 44 44 H 1.08001 * 120.00371 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6132 -1.3136 6 1 3.8570 0.4359 -1.2677 7 6 4.0645 -1.2250 -2.6240 8 7 4.1537 -1.3341 -0.1824 9 6 5.3943 -0.9854 0.2807 10 1 5.9389 -0.1792 -0.1883 11 6 5.9521 -1.6681 1.3530 12 7 7.1447 -1.3333 1.7977 13 14 5.0100 -3.0620 2.1646 14 1 5.3468 -4.3435 1.4940 15 1 5.3828 -3.1416 3.5999 16 1 3.5516 -2.8092 2.0452 17 7 2.0184 -0.6905 1.1961 18 6 2.1470 -0.0182 2.3571 19 8 1.8589 1.1587 2.4114 20 6 2.6499 -0.7284 3.5875 21 6 2.7010 0.2401 4.7409 22 6 1.6001 0.3952 5.5625 23 6 1.6472 1.2832 6.6209 24 6 2.7945 2.0172 6.8568 25 6 3.8955 1.8619 6.0354 26 6 3.8488 0.9731 4.9777 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.7518 -1.7715 -1.2055 31 1 1.6054 -0.2618 -2.1370 32 1 3.6264 -0.6887 -3.4657 33 1 5.1510 -1.1484 -2.6697 34 1 3.7724 -2.2741 -2.6698 35 1 3.6648 -2.0583 0.2387 36 1 7.5347 -1.8105 2.5468 37 1 2.2491 -1.6317 1.1526 38 1 3.6491 -1.1202 3.3980 39 1 1.9776 -1.5506 3.8326 40 1 0.7017 -0.1742 5.3749 41 1 0.7869 1.4046 7.2625 42 1 2.8311 2.7113 7.6834 43 1 4.7920 2.4350 6.2199 44 1 4.7089 0.8520 4.3358 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134765339.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:46 Heat of formation + Delta-G solvation = -22.292963 kcal Electronic energy + Delta-G solvation = -24114.590265 eV Core-core repulsion = 20838.186271 eV Total energy + Delta-G solvation = -3276.403994 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 10.62 seconds Orbital eigenvalues (eV) -41.14641 -39.83573 -38.38254 -35.89267 -34.23339 -33.82248 -32.32587 -31.78793 -30.76374 -28.44281 -27.60121 -25.32581 -23.49089 -23.37825 -22.04599 -21.91855 -21.00766 -19.57541 -18.08398 -17.85786 -17.22248 -16.60880 -16.54556 -16.17452 -15.87740 -15.49953 -15.06917 -14.98987 -14.41687 -14.34355 -14.27472 -14.18115 -13.91824 -13.46983 -13.44965 -13.38040 -13.01112 -12.87530 -12.64562 -12.54267 -12.36872 -12.07617 -11.98280 -11.89378 -11.80097 -11.60294 -11.46153 -10.98141 -10.85401 -9.95272 -9.82284 -9.63820 -9.20193 -7.97029 -5.28535 0.40814 0.49746 1.20979 1.37920 1.45995 1.73260 2.35410 2.48850 2.93448 3.34557 3.62044 3.67715 3.79671 3.88672 4.07106 4.13593 4.15146 4.25816 4.30376 4.33318 4.47140 4.54072 4.63213 4.64596 4.75039 4.79865 4.84370 4.89804 5.03427 5.07220 5.08690 5.13984 5.15435 5.35046 5.37387 5.53905 5.58789 5.59549 5.68602 5.70941 5.82601 6.11787 6.25046 6.61504 7.12767 7.34342 7.87460 8.08319 9.25311 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.013863 B = 0.006577 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.265920 B = 4255.973309 C = 5534.342054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.142 3.858 3 H 0.053 0.947 4 C -0.121 4.121 5 C 0.165 3.835 6 H 0.028 0.972 7 C -0.155 4.155 8 N -0.738 5.738 9 C -0.214 4.214 10 H 0.043 0.957 11 C -0.065 4.065 12 N -0.987 5.987 13 Si 0.943 3.057 14 H -0.288 1.288 15 H -0.300 1.300 16 H -0.230 1.230 17 N -0.702 5.702 18 C 0.524 3.476 19 O -0.579 6.579 20 C -0.111 4.111 21 C -0.078 4.078 22 C -0.116 4.116 23 C -0.120 4.120 24 C -0.124 4.124 25 C -0.129 4.129 26 C -0.134 4.134 27 H 0.072 0.928 28 H 0.038 0.962 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.113 0.887 32 H 0.073 0.927 33 H 0.024 0.976 34 H 0.057 0.943 35 H 0.363 0.637 36 H 0.253 0.747 37 H 0.400 0.600 38 H 0.081 0.919 39 H 0.128 0.872 40 H 0.139 0.861 41 H 0.155 0.845 42 H 0.152 0.848 43 H 0.132 0.868 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.176 -0.484 2.739 17.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.038 3.962 3 H 0.072 0.928 4 C -0.160 4.160 5 C 0.058 3.942 6 H 0.046 0.954 7 C -0.215 4.215 8 N -0.384 5.384 9 C -0.346 4.346 10 H 0.061 0.939 11 C -0.256 4.256 12 N -0.638 5.638 13 Si 0.772 3.228 14 H -0.215 1.215 15 H -0.227 1.227 16 H -0.155 1.155 17 N -0.355 5.355 18 C 0.311 3.689 19 O -0.459 6.459 20 C -0.151 4.151 21 C -0.078 4.078 22 C -0.134 4.134 23 C -0.138 4.138 24 C -0.141 4.141 25 C -0.147 4.147 26 C -0.152 4.152 27 H 0.091 0.909 28 H 0.058 0.942 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.132 0.868 32 H 0.092 0.908 33 H 0.043 0.957 34 H 0.076 0.924 35 H 0.198 0.802 36 H 0.062 0.938 37 H 0.238 0.762 38 H 0.099 0.901 39 H 0.146 0.854 40 H 0.157 0.843 41 H 0.173 0.827 42 H 0.170 0.830 43 H 0.150 0.850 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -17.211 0.464 2.740 17.434 hybrid contribution 1.049 -1.095 0.411 1.571 sum -16.162 -0.631 3.152 16.479 Atomic orbital electron populations 1.22089 0.93432 1.02935 1.02353 1.20991 0.94643 0.96282 0.84266 0.92825 1.22174 0.94101 1.02126 0.97550 1.20488 0.92400 0.94354 0.86991 0.95381 1.22259 0.99998 1.01305 0.97941 1.42726 1.17576 1.40620 1.37453 1.18897 0.92969 1.12474 1.10222 0.93885 1.25425 0.97605 1.02651 0.99873 1.69897 1.18520 1.45641 1.29778 0.85754 0.80200 0.79574 0.77305 1.21543 1.22691 1.15475 1.46185 1.66065 1.14086 1.09181 1.20441 0.76482 0.86819 0.85128 1.90624 1.52227 1.17155 1.85900 1.20881 1.03550 0.98888 0.91777 1.19451 0.94918 0.97640 0.95837 1.21232 0.97259 0.99617 0.95254 1.21486 0.99014 0.95700 0.97585 1.21486 0.92828 0.99923 0.99884 1.21340 1.00084 0.98155 0.95146 1.21147 0.97844 0.97754 0.98489 0.90854 0.94234 0.89649 0.89595 0.86840 0.90843 0.95665 0.92393 0.80244 0.93794 0.76193 0.90076 0.85435 0.84321 0.82733 0.83027 0.84998 0.89002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.48 71.98 0.68 -2.64 16 2 C 0.14 4.11 2.57 44.99 0.12 4.22 16 3 H 0.05 1.91 7.58 -2.39 -0.02 1.90 16 4 C -0.12 -2.98 4.43 30.59 0.14 -2.84 16 5 C 0.17 5.72 2.89 44.99 0.13 5.85 16 6 H 0.03 1.13 8.08 -2.39 -0.02 1.11 16 7 C -0.16 -4.80 9.49 71.98 0.68 -4.12 16 8 N -0.74 -31.28 3.65 -322.93 -1.18 -32.46 16 9 C -0.21 -11.80 10.41 84.03 0.87 -10.93 16 10 H 0.04 2.72 8.06 -2.91 -0.02 2.70 16 11 C -0.06 -3.70 5.50 84.86 0.47 -3.24 16 12 N -0.99 -62.94 13.97 21.65 0.30 -62.63 16 13 Si 0.94 42.33 25.12 68.60 1.72 44.06 16 14 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 15 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 16 H -0.23 -8.17 4.58 99.48 0.46 -7.72 16 17 N -0.70 -23.03 3.80 -442.54 -1.68 -24.71 16 18 C 0.52 19.95 7.79 87.66 0.68 20.63 16 19 O -0.58 -25.70 15.70 -3.05 -0.05 -25.74 16 20 C -0.11 -3.92 5.38 29.10 0.16 -3.76 16 21 C -0.08 -2.76 4.37 -19.87 -0.09 -2.85 16 22 C -0.12 -3.31 9.70 22.27 0.22 -3.09 16 23 C -0.12 -2.93 10.05 22.27 0.22 -2.71 16 24 C -0.12 -3.13 10.05 22.27 0.22 -2.90 16 25 C -0.13 -4.05 10.05 22.27 0.22 -3.83 16 26 C -0.13 -5.13 9.70 22.27 0.22 -4.92 16 27 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.11 2.08 8.14 -2.38 -0.02 2.06 16 32 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.36 14.04 3.78 -92.71 -0.35 13.69 16 36 H 0.25 15.55 8.31 -92.71 -0.77 14.78 16 37 H 0.40 12.28 5.10 -92.71 -0.47 11.81 16 38 H 0.08 3.25 4.92 -2.39 -0.01 3.24 16 39 H 0.13 3.44 8.09 -2.39 -0.02 3.42 16 40 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 41 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 42 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 43 H 0.13 3.63 8.06 -2.91 -0.02 3.61 16 44 H 0.09 4.03 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -75.24 352.24 3.97 -71.26 By element: Atomic # 1 Polarization: 47.43 SS G_CDS: -0.09 Total: 47.34 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: 4.94 Total: -17.11 kcal Atomic # 7 Polarization: -117.25 SS G_CDS: -2.56 Total: -119.80 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.05 Total: -25.74 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 1.72 Total: 44.06 kcal Total: -75.24 3.97 -71.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134765339.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.971 kcal (2) G-P(sol) polarization free energy of solvation -75.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.62 seconds