Wall clock time and date at job start Tue Mar 31 2020 07:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 C 1.53003 * 109.46807 * 184.99648 * 4 2 1 6 6 H 1.08998 * 109.47461 * 305.00352 * 5 4 2 7 7 C 1.53000 * 109.46994 * 184.99940 * 5 4 2 8 8 N 1.46501 * 109.46925 * 65.00479 * 5 4 2 9 9 C 1.34776 * 119.99862 * 204.99701 * 8 5 4 10 10 O 1.21273 * 120.00156 * 0.02562 * 9 8 5 11 11 C 1.50708 * 119.99804 * 179.97438 * 9 8 5 12 12 C 1.50696 * 109.46904 * 180.02562 * 11 9 8 13 13 C 1.38242 * 119.99999 * 269.72537 * 12 11 9 14 14 C 1.38236 * 119.99692 * 179.76763 * 13 12 11 15 15 C 1.38229 * 120.00259 * 0.50579 * 14 13 12 16 16 C 1.38237 * 120.00137 * 359.74587 * 15 14 13 17 17 C 1.38236 * 119.99909 * 0.02562 * 16 15 14 18 18 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 19 19 C 1.36943 * 119.99752 * 84.72207 * 18 2 1 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 2 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 2 22 22 N 1.31624 * 119.99698 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47213 * 60.00246 * 23 21 19 25 25 H 1.48502 * 109.47317 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47081 * 299.99875 * 23 21 19 27 27 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 28 28 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 30 30 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 31 31 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 32 32 H 1.09005 * 109.47051 * 60.00231 * 7 5 4 33 33 H 1.08994 * 109.47045 * 180.02562 * 7 5 4 34 34 H 1.08998 * 109.47353 * 300.00478 * 7 5 4 35 35 H 0.97000 * 119.99999 * 24.99425 * 8 5 4 36 36 H 1.09005 * 109.46884 * 299.99685 * 11 9 8 37 37 H 1.09000 * 109.47074 * 60.00149 * 11 9 8 38 38 H 1.07997 * 119.99902 * 0.02562 * 13 12 11 39 39 H 1.08008 * 119.99516 * 180.23296 * 14 13 12 40 40 H 1.08004 * 120.00076 * 179.72494 * 15 14 13 41 41 H 1.07999 * 120.00238 * 179.97438 * 16 15 14 42 42 H 1.07991 * 120.00198 * 179.97438 * 17 16 15 43 43 H 0.97001 * 120.00384 * 265.00562 * 18 2 1 44 44 H 0.96999 * 119.99739 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3136 6 1 3.9954 -0.9923 0.3867 7 6 4.0852 -1.4384 2.4924 8 7 3.9480 0.7893 1.4924 9 6 5.1612 1.2135 1.0867 10 8 5.9355 0.4341 0.5731 11 6 5.5551 2.6566 1.2701 12 6 6.9485 2.8685 0.7369 13 6 8.0393 2.7110 1.5715 14 6 9.3178 2.9007 1.0811 15 6 9.5050 3.2582 -0.2410 16 6 8.4140 3.4209 -1.0742 17 6 7.1358 3.2265 -0.5851 18 7 2.0184 -0.6906 -1.1962 19 6 2.1437 -0.0088 -2.3771 20 1 1.8868 1.0391 -2.4256 21 6 2.6010 -0.6645 -3.5120 22 7 2.9136 -1.9417 -3.4530 23 14 2.7727 0.2657 -5.1227 24 1 3.7294 1.3878 -4.9468 25 1 3.2759 -0.6541 -6.1744 26 1 1.4488 0.8028 -5.5277 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6054 -0.2618 2.1369 31 1 1.7517 -1.7715 1.2056 32 1 3.8001 -2.4820 2.3594 33 1 5.1714 -1.3611 2.5385 34 1 3.6547 -1.0595 3.4193 35 1 3.3285 1.4128 1.9028 36 1 4.8579 3.2952 0.7277 37 1 5.5291 2.9083 2.3303 38 1 7.8929 2.4355 2.6054 39 1 10.1702 2.7739 1.7322 40 1 10.5037 3.4108 -0.6229 41 1 8.5602 3.7006 -2.1070 42 1 6.2834 3.3540 -1.2358 43 1 2.2490 -1.6318 -1.1527 44 1 3.2335 -2.3998 -4.2459 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134765340.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:08 Heat of formation + Delta-G solvation = -16.396374 kcal Electronic energy + Delta-G solvation = -23283.608895 eV Core-core repulsion = 20007.460596 eV Total energy + Delta-G solvation = -3276.148299 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.69 seconds Orbital eigenvalues (eV) -39.85402 -38.66815 -36.73793 -34.38109 -32.83277 -32.06841 -30.78973 -30.60591 -28.56975 -27.34486 -26.26906 -23.58780 -22.49287 -22.19098 -20.83436 -20.05234 -19.66060 -17.28782 -16.81059 -16.62553 -15.80669 -15.43701 -15.01414 -14.68514 -14.27656 -13.94244 -13.70946 -13.53142 -13.30494 -13.06979 -12.93851 -12.67397 -12.34945 -12.17978 -12.00973 -11.78409 -11.70282 -11.57051 -11.04989 -10.99101 -10.90593 -10.78754 -10.57942 -10.37715 -10.21523 -9.87002 -9.58275 -9.48517 -8.83904 -8.80133 -8.61815 -8.60328 -6.88252 -5.69220 -2.97090 1.42613 1.52221 3.05815 3.47601 3.50776 3.51895 3.53149 3.98702 4.65244 4.72105 4.89278 5.07351 5.10195 5.17851 5.25871 5.32741 5.46959 5.49509 5.53188 5.60563 5.65835 5.72771 5.73640 5.93326 5.98520 6.04632 6.08091 6.13538 6.17011 6.32486 6.39772 6.47553 6.53056 6.60221 6.60532 6.69407 6.77552 6.86803 6.99231 7.09572 7.10574 7.74541 7.89461 8.49212 8.66638 9.60266 10.18126 10.52153 11.53559 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.011681 B = 0.005299 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.391900 B = 5282.832635 C = 6946.384640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.172 3.828 3 H 0.045 0.955 4 C -0.130 4.130 5 C 0.144 3.856 6 H 0.104 0.896 7 C -0.160 4.160 8 N -0.719 5.719 9 C 0.514 3.486 10 O -0.524 6.524 11 C -0.104 4.104 12 C -0.060 4.060 13 C -0.108 4.108 14 C -0.123 4.123 15 C -0.125 4.125 16 C -0.119 4.119 17 C -0.101 4.101 18 N -0.720 5.720 19 C -0.235 4.235 20 H 0.066 0.934 21 C -0.011 4.011 22 N -0.931 5.931 23 Si 0.902 3.098 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.287 1.287 27 H 0.051 0.949 28 H 0.045 0.955 29 H 0.033 0.967 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.393 0.607 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.383 0.617 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.699 10.200 14.349 18.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.062 3.938 3 H 0.063 0.937 4 C -0.169 4.169 5 C 0.040 3.960 6 H 0.122 0.878 7 C -0.219 4.219 8 N -0.371 5.371 9 C 0.299 3.701 10 O -0.399 6.399 11 C -0.144 4.144 12 C -0.061 4.061 13 C -0.126 4.126 14 C -0.141 4.141 15 C -0.143 4.143 16 C -0.137 4.137 17 C -0.119 4.119 18 N -0.362 5.362 19 C -0.366 4.366 20 H 0.084 0.916 21 C -0.207 4.207 22 N -0.580 5.580 23 Si 0.734 3.266 24 H -0.214 1.214 25 H -0.217 1.217 26 H -0.214 1.214 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.226 0.774 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.216 0.784 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.286 9.723 13.818 18.028 hybrid contribution -0.261 0.388 -0.823 0.947 sum 6.025 10.111 12.995 17.534 Atomic orbital electron populations 1.22463 0.99626 1.00778 0.99712 1.20213 0.91469 0.95531 0.86587 0.93670 1.22159 0.93860 1.02128 0.98743 1.20999 0.94942 0.80339 0.99739 0.87769 1.22177 1.01448 1.00171 0.98057 1.45973 1.16486 1.11557 1.63039 1.20334 0.81976 0.89645 0.78129 1.90748 1.50947 1.56379 1.41866 1.20699 0.95332 0.95277 1.03102 1.19291 0.93761 0.98928 0.94115 1.20930 0.92338 0.99857 0.99477 1.21040 0.96795 1.00470 0.95801 1.21099 0.98625 1.00472 0.94063 1.21116 0.92626 1.00297 0.99623 1.21076 0.97557 0.98559 0.94741 1.42389 1.77988 1.10624 1.05179 1.19097 1.36660 0.93603 0.87234 0.91614 1.24688 1.02236 0.95918 0.97893 1.69637 1.50959 1.08575 1.28796 0.86343 0.77610 0.78717 0.83973 1.21378 1.21732 1.21438 0.92943 0.93565 0.94755 0.92128 0.90748 0.91855 0.92620 0.93241 0.77385 0.88032 0.88427 0.86489 0.86369 0.86411 0.86149 0.85965 0.78357 0.93559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 9.49 37.16 0.35 -2.54 16 2 C 0.17 3.25 2.84 -67.93 -0.19 3.05 16 3 H 0.05 0.87 7.56 -51.93 -0.39 0.47 16 4 C -0.13 -1.99 4.29 -26.73 -0.11 -2.10 16 5 C 0.14 2.35 2.52 -67.93 -0.17 2.17 16 6 H 0.10 2.27 7.05 -51.93 -0.37 1.90 16 7 C -0.16 -2.24 9.48 37.16 0.35 -1.89 16 8 N -0.72 -10.31 4.45 -53.80 -0.24 -10.55 16 9 C 0.51 8.37 7.79 -10.98 -0.09 8.29 16 10 O -0.52 -11.24 15.70 5.56 0.09 -11.15 16 11 C -0.10 -1.26 5.83 -29.03 -0.17 -1.43 16 12 C -0.06 -0.84 4.37 -104.62 -0.46 -1.30 16 13 C -0.11 -1.38 9.70 -39.58 -0.38 -1.77 16 14 C -0.12 -1.48 10.05 -39.59 -0.40 -1.87 16 15 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 16 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 17 C -0.10 -1.48 9.70 -39.58 -0.38 -1.86 16 18 N -0.72 -17.75 4.49 -53.43 -0.24 -17.99 16 19 C -0.23 -6.53 9.93 -15.06 -0.15 -6.68 16 20 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 21 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 22 N -0.93 -28.73 13.06 55.49 0.72 -28.00 16 23 Si 0.90 23.01 29.55 -169.99 -5.02 17.99 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.39 4.32 8.60 -40.82 -0.35 3.97 16 36 H 0.10 1.09 8.08 -51.93 -0.42 0.67 16 37 H 0.10 0.87 8.08 -51.93 -0.42 0.45 16 38 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 39 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 40 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 41 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 42 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 43 H 0.38 10.18 7.80 -40.82 -0.32 9.86 16 44 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 368.90 15.07 5.56 5.56 Total: -1.00 -34.31 368.90 -9.13 -43.44 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -7.31 Total: 12.95 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -2.69 Total: -12.24 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: 0.25 Total: -56.55 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.31 -9.13 -43.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134765340.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.046 kcal (2) G-P(sol) polarization free energy of solvation -34.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.69 seconds