Wall clock time and date at job start Tue Mar 31 2020 07:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 C 1.53003 * 109.46807 * 184.99648 * 4 2 1 6 6 H 1.08998 * 109.47461 * 305.00352 * 5 4 2 7 7 C 1.53000 * 109.46994 * 184.99940 * 5 4 2 8 8 N 1.46501 * 109.46925 * 65.00479 * 5 4 2 9 9 C 1.34776 * 119.99862 * 204.99701 * 8 5 4 10 10 O 1.21273 * 120.00156 * 0.02562 * 9 8 5 11 11 C 1.50708 * 119.99804 * 179.97438 * 9 8 5 12 12 C 1.50696 * 109.46904 * 180.02562 * 11 9 8 13 13 C 1.38242 * 119.99999 * 269.72537 * 12 11 9 14 14 C 1.38236 * 119.99692 * 179.76763 * 13 12 11 15 15 C 1.38229 * 120.00259 * 0.50579 * 14 13 12 16 16 C 1.38237 * 120.00137 * 359.74587 * 15 14 13 17 17 C 1.38236 * 119.99909 * 0.02562 * 16 15 14 18 18 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 19 19 C 1.36943 * 119.99752 * 84.72207 * 18 2 1 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 2 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 2 22 22 N 1.31624 * 119.99698 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47213 * 60.00246 * 23 21 19 25 25 H 1.48502 * 109.47317 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47081 * 299.99875 * 23 21 19 27 27 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 28 28 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 30 30 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 31 31 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 32 32 H 1.09005 * 109.47051 * 60.00231 * 7 5 4 33 33 H 1.08994 * 109.47045 * 180.02562 * 7 5 4 34 34 H 1.08998 * 109.47353 * 300.00478 * 7 5 4 35 35 H 0.97000 * 119.99999 * 24.99425 * 8 5 4 36 36 H 1.09005 * 109.46884 * 299.99685 * 11 9 8 37 37 H 1.09000 * 109.47074 * 60.00149 * 11 9 8 38 38 H 1.07997 * 119.99902 * 0.02562 * 13 12 11 39 39 H 1.08008 * 119.99516 * 180.23296 * 14 13 12 40 40 H 1.08004 * 120.00076 * 179.72494 * 15 14 13 41 41 H 1.07999 * 120.00238 * 179.97438 * 16 15 14 42 42 H 1.07991 * 120.00198 * 179.97438 * 17 16 15 43 43 H 0.97001 * 120.00384 * 265.00562 * 18 2 1 44 44 H 0.96999 * 119.99739 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3136 6 1 3.9954 -0.9923 0.3867 7 6 4.0852 -1.4384 2.4924 8 7 3.9480 0.7893 1.4924 9 6 5.1612 1.2135 1.0867 10 8 5.9355 0.4341 0.5731 11 6 5.5551 2.6566 1.2701 12 6 6.9485 2.8685 0.7369 13 6 8.0393 2.7110 1.5715 14 6 9.3178 2.9007 1.0811 15 6 9.5050 3.2582 -0.2410 16 6 8.4140 3.4209 -1.0742 17 6 7.1358 3.2265 -0.5851 18 7 2.0184 -0.6906 -1.1962 19 6 2.1437 -0.0088 -2.3771 20 1 1.8868 1.0391 -2.4256 21 6 2.6010 -0.6645 -3.5120 22 7 2.9136 -1.9417 -3.4530 23 14 2.7727 0.2657 -5.1227 24 1 3.7294 1.3878 -4.9468 25 1 3.2759 -0.6541 -6.1744 26 1 1.4488 0.8028 -5.5277 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6054 -0.2618 2.1369 31 1 1.7517 -1.7715 1.2056 32 1 3.8001 -2.4820 2.3594 33 1 5.1714 -1.3611 2.5385 34 1 3.6547 -1.0595 3.4193 35 1 3.3285 1.4128 1.9028 36 1 4.8579 3.2952 0.7277 37 1 5.5291 2.9083 2.3303 38 1 7.8929 2.4355 2.6054 39 1 10.1702 2.7739 1.7322 40 1 10.5037 3.4108 -0.6229 41 1 8.5602 3.7006 -2.1070 42 1 6.2834 3.3540 -1.2358 43 1 2.2490 -1.6318 -1.1527 44 1 3.2335 -2.3998 -4.2459 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134765340.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:05 Heat of formation + Delta-G solvation = -38.382329 kcal Electronic energy + Delta-G solvation = -23284.562277 eV Core-core repulsion = 20007.460596 eV Total energy + Delta-G solvation = -3277.101681 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.04559 -39.74960 -38.22607 -36.00261 -34.06918 -33.77254 -31.92816 -31.75621 -30.41564 -28.36096 -27.56382 -25.65853 -23.46888 -23.33608 -22.07411 -21.29961 -21.13559 -19.27956 -18.03455 -17.73012 -17.08009 -16.66475 -16.43857 -15.96423 -15.62350 -15.59397 -15.33964 -14.80193 -14.51285 -14.30574 -14.21891 -13.93335 -13.60388 -13.41153 -13.31453 -13.19868 -12.91213 -12.84940 -12.77815 -12.65081 -12.25350 -12.20900 -11.99022 -11.85968 -11.79706 -11.54464 -11.40147 -10.91017 -10.81179 -9.90743 -9.79001 -9.60285 -8.94321 -7.91783 -5.16971 0.43920 0.52881 1.41412 1.44834 1.49958 1.81374 2.37645 2.56085 2.97268 3.42747 3.72789 3.84376 3.96296 4.01133 4.12092 4.16560 4.24267 4.28027 4.40774 4.44573 4.57118 4.59636 4.66299 4.71511 4.79514 4.81062 4.84900 4.96826 5.05182 5.11517 5.14114 5.17030 5.26590 5.37224 5.45380 5.52789 5.56946 5.62625 5.64672 5.69481 5.73749 6.14672 6.31366 6.74886 7.36858 7.48381 8.18010 8.37079 9.32059 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.011681 B = 0.005299 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.391900 B = 5282.832635 C = 6946.384640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.163 3.837 3 H 0.045 0.955 4 C -0.117 4.117 5 C 0.147 3.853 6 H 0.041 0.959 7 C -0.150 4.150 8 N -0.706 5.706 9 C 0.507 3.493 10 O -0.586 6.586 11 C -0.095 4.095 12 C -0.078 4.078 13 C -0.118 4.118 14 C -0.128 4.128 15 C -0.131 4.131 16 C -0.135 4.135 17 C -0.131 4.131 18 N -0.732 5.732 19 C -0.225 4.225 20 H 0.071 0.929 21 C -0.079 4.079 22 N -0.970 5.970 23 Si 0.961 3.039 24 H -0.284 1.284 25 H -0.299 1.299 26 H -0.275 1.275 27 H 0.029 0.971 28 H 0.040 0.960 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.035 0.965 34 H 0.084 0.916 35 H 0.413 0.587 36 H 0.116 0.884 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.146 0.854 40 H 0.143 0.857 41 H 0.130 0.870 42 H 0.111 0.889 43 H 0.369 0.631 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.062 12.013 16.915 21.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.056 3.944 3 H 0.063 0.937 4 C -0.155 4.155 5 C 0.042 3.958 6 H 0.059 0.941 7 C -0.208 4.208 8 N -0.358 5.358 9 C 0.294 3.706 10 O -0.465 6.465 11 C -0.134 4.134 12 C -0.079 4.079 13 C -0.136 4.136 14 C -0.145 4.145 15 C -0.149 4.149 16 C -0.153 4.153 17 C -0.149 4.149 18 N -0.372 5.372 19 C -0.357 4.357 20 H 0.089 0.911 21 C -0.271 4.271 22 N -0.622 5.622 23 Si 0.791 3.209 24 H -0.211 1.211 25 H -0.225 1.225 26 H -0.201 1.201 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.096 0.904 30 H 0.126 0.874 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.102 0.898 35 H 0.250 0.750 36 H 0.134 0.866 37 H 0.156 0.844 38 H 0.155 0.845 39 H 0.164 0.836 40 H 0.161 0.839 41 H 0.148 0.852 42 H 0.129 0.871 43 H 0.200 0.800 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.580 11.608 16.443 20.887 hybrid contribution -0.069 -0.136 -1.531 1.538 sum 5.511 11.471 14.913 19.605 Atomic orbital electron populations 1.22311 0.97796 1.00766 1.00741 1.20532 0.92554 0.95370 0.85984 0.93654 1.22064 0.92853 1.02033 0.98565 1.20766 0.95452 0.81585 0.98026 0.94065 1.22065 1.00265 1.00106 0.98360 1.45853 1.16397 1.11259 1.62316 1.21106 0.81693 0.90931 0.76843 1.90725 1.52809 1.58335 1.44648 1.20737 0.94686 0.92217 1.05770 1.19561 0.95112 0.99130 0.94078 1.21271 0.92425 0.99495 1.00433 1.21458 0.97562 0.99350 0.96166 1.21453 0.99414 0.99778 0.94213 1.21377 0.92752 1.00605 1.00558 1.21230 0.97924 1.00315 0.95478 1.42617 1.78229 1.10135 1.06259 1.19479 1.34106 0.93806 0.88327 0.91116 1.25438 1.03634 0.96808 1.01216 1.69800 1.53239 1.10126 1.29015 0.85392 0.77931 0.77357 0.80266 1.21098 1.22506 1.20062 0.95220 0.94113 0.90367 0.87365 0.90976 0.91621 0.94540 0.89752 0.74961 0.86599 0.84390 0.84495 0.83629 0.83933 0.85170 0.87079 0.79987 0.94463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.06 9.49 71.98 0.68 -4.37 16 2 C 0.16 5.92 2.84 44.99 0.13 6.05 16 3 H 0.05 1.65 7.56 -2.39 -0.02 1.63 16 4 C -0.12 -3.27 4.29 30.60 0.13 -3.14 16 5 C 0.15 4.68 2.52 44.99 0.11 4.79 16 6 H 0.04 1.88 7.05 -2.39 -0.02 1.86 16 7 C -0.15 -3.96 9.48 71.98 0.68 -3.27 16 8 N -0.71 -19.09 4.45 -442.53 -1.97 -21.06 16 9 C 0.51 16.30 7.79 87.66 0.68 16.99 16 10 O -0.59 -26.03 15.70 -3.01 -0.05 -26.08 16 11 C -0.09 -2.14 5.83 29.10 0.17 -1.97 16 12 C -0.08 -2.14 4.37 -19.86 -0.09 -2.23 16 13 C -0.12 -2.86 9.70 22.27 0.22 -2.65 16 14 C -0.13 -2.85 10.05 22.27 0.22 -2.63 16 15 C -0.13 -3.04 10.05 22.27 0.22 -2.82 16 16 C -0.13 -3.62 10.05 22.27 0.22 -3.40 16 17 C -0.13 -3.93 9.70 22.27 0.22 -3.71 16 18 N -0.73 -36.66 4.49 -322.94 -1.45 -38.11 16 19 C -0.22 -12.70 9.93 84.03 0.83 -11.87 16 20 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 21 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 22 N -0.97 -62.14 13.06 21.65 0.28 -61.86 16 23 Si 0.96 48.40 29.55 68.60 2.03 50.43 16 24 H -0.28 -14.02 7.11 99.48 0.71 -13.31 16 25 H -0.30 -15.27 7.11 99.48 0.71 -14.56 16 26 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 27 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.41 7.65 8.60 -92.71 -0.80 6.86 16 36 H 0.12 2.27 8.08 -2.38 -0.02 2.25 16 37 H 0.14 1.95 8.08 -2.39 -0.02 1.94 16 38 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 39 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 40 H 0.14 2.49 8.06 -2.91 -0.02 2.46 16 41 H 0.13 3.04 8.06 -2.91 -0.02 3.02 16 42 H 0.11 3.39 8.06 -2.92 -0.02 3.37 16 43 H 0.37 20.33 7.80 -92.71 -0.72 19.60 16 44 H 0.25 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -79.45 368.90 3.21 -76.23 By element: Atomic # 1 Polarization: 39.49 SS G_CDS: -0.54 Total: 38.95 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: 4.91 Total: -18.51 kcal Atomic # 7 Polarization: -117.89 SS G_CDS: -3.14 Total: -121.02 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.05 Total: -26.08 kcal Atomic # 14 Polarization: 48.40 SS G_CDS: 2.03 Total: 50.43 kcal Total: -79.45 3.21 -76.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134765340.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.851 kcal (2) G-P(sol) polarization free energy of solvation -79.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds