Wall clock time and date at job start Tue Mar 31 2020 07:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53006 * 109.46846 * 65.00509 * 4 2 1 6 6 C 1.50701 * 109.47024 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00074 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99965 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99736 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.46978 * 180.02562 * 9 8 6 11 11 N 1.46492 * 109.47218 * 180.02562 * 10 9 8 12 12 C 1.36940 * 120.00125 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00122 * 359.97438 * 12 11 10 14 14 C 1.38812 * 120.00221 * 180.02562 * 12 11 10 15 15 N 1.31623 * 120.00006 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00336 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47149 * 59.99025 * 16 14 12 18 18 H 1.48488 * 109.47442 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46963 * 299.99551 * 16 14 12 20 20 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 21 21 C 1.38237 * 119.99747 * 59.72563 * 20 2 1 22 22 C 1.38240 * 119.99788 * 179.81066 * 21 20 2 23 23 C 1.38236 * 119.99657 * 0.39831 * 22 21 20 24 24 C 1.38230 * 120.00403 * 359.85459 * 23 22 21 25 25 C 1.38232 * 120.00112 * 240.00114 * 20 2 1 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 30 30 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 31 31 H 1.09002 * 109.46824 * 299.99583 * 5 4 2 32 32 H 1.09001 * 109.47241 * 59.99481 * 5 4 2 33 33 H 0.97002 * 119.99484 * 0.02562 * 8 6 5 34 34 H 1.09000 * 109.47590 * 300.00511 * 9 8 6 35 35 H 1.09001 * 109.47111 * 60.00822 * 9 8 6 36 36 H 1.09000 * 109.47254 * 300.00566 * 10 9 8 37 37 H 1.09001 * 109.46896 * 59.99897 * 10 9 8 38 38 H 0.97002 * 120.00539 * 0.02562 * 11 10 9 39 39 H 0.96993 * 119.99989 * 180.02562 * 15 14 12 40 40 H 1.08003 * 120.00234 * 0.02562 * 21 20 2 41 41 H 1.07995 * 119.99993 * 180.23158 * 22 21 20 42 42 H 1.08005 * 119.99783 * 179.83592 * 23 22 21 43 43 H 1.08000 * 120.00473 * 179.97438 * 24 23 22 44 44 H 1.08005 * 119.99991 * 359.97438 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6354 0.0689 -2.4953 6 6 2.1383 -0.6412 -3.7257 7 8 2.7588 -1.6775 -3.6167 8 7 1.8975 -0.1252 -4.9473 9 6 2.3869 -0.8152 -6.1433 10 6 1.9821 -0.0251 -7.3895 11 7 2.4709 -0.7154 -8.5855 12 6 2.2272 -0.1907 -9.8267 13 1 1.6742 0.7319 -9.9238 14 6 2.6899 -0.8450 -10.9601 15 7 3.3634 -1.9697 -10.8418 16 14 2.3568 -0.1296 -12.6531 17 1 2.9629 1.2228 -12.7470 18 1 2.9521 -1.0114 -13.6890 19 1 0.8909 -0.0311 -12.8692 20 6 2.0323 -0.7104 1.2305 21 6 1.6936 -2.0322 1.4521 22 6 2.1576 -2.6850 2.5788 23 6 2.9535 -2.0136 3.4881 24 6 3.2878 -0.6903 3.2691 25 6 2.8270 -0.0386 2.1405 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 3.1264 -0.7995 -1.2055 30 1 1.6055 -1.7198 -1.2951 31 1 0.5490 0.1471 -2.5390 32 1 2.0700 1.0675 -2.4494 33 1 1.4009 0.7035 -5.0344 34 1 3.4733 -0.8924 -6.0994 35 1 1.9532 -1.8142 -6.1894 36 1 0.8958 0.0524 -7.4336 37 1 2.4160 0.9737 -7.3431 38 1 2.9673 -1.5443 -8.4984 39 1 3.6870 -2.4268 -11.6337 40 1 1.0694 -2.5559 0.7432 41 1 1.8961 -3.7187 2.7501 42 1 3.3138 -2.5228 4.3697 43 1 3.9092 -0.1656 3.9797 44 1 3.0883 0.9953 1.9693 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134806486.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:15 Heat of formation + Delta-G solvation = -24.679400 kcal Electronic energy + Delta-G solvation = -21525.393051 eV Core-core repulsion = 18248.885573 eV Total energy + Delta-G solvation = -3276.507478 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.99359 -39.37965 -36.29473 -35.55320 -33.80592 -31.77654 -31.17224 -31.03051 -29.21609 -27.71687 -25.44325 -23.68808 -23.05202 -22.44295 -21.43873 -20.32098 -19.87885 -17.48797 -17.18668 -16.71611 -15.99348 -15.68819 -15.33046 -15.18938 -14.56891 -14.56336 -14.15262 -13.91156 -13.65828 -13.51525 -13.31602 -13.16609 -12.89406 -12.73316 -12.50911 -12.06515 -11.87894 -11.49109 -11.37489 -11.14120 -11.09756 -10.92275 -10.81723 -10.79752 -10.70675 -10.15566 -9.85478 -9.64613 -9.16890 -8.97309 -8.93725 -8.80165 -6.99664 -5.79568 -3.10447 1.10633 1.15169 2.77743 3.29683 3.42540 3.46888 3.48337 3.54953 4.32383 4.45895 4.57645 4.71241 4.74244 4.80233 4.86202 4.92549 5.08096 5.15662 5.17392 5.27150 5.32391 5.38559 5.50043 5.55308 5.63065 5.64413 5.74483 5.79069 5.80019 5.82755 5.97172 6.00824 6.13212 6.16702 6.22967 6.27010 6.41250 6.51300 6.70927 6.75531 6.76649 7.64850 7.66101 8.36652 8.39048 9.49090 10.04134 10.38815 11.42919 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.045755 B = 0.001971 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.810223 B =14205.959342 C =14470.385840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.054 4.054 3 H 0.079 0.921 4 C -0.095 4.095 5 C -0.142 4.142 6 C 0.507 3.493 7 O -0.543 6.543 8 N -0.726 5.726 9 C 0.110 3.890 10 C 0.145 3.855 11 N -0.730 5.730 12 C -0.245 4.245 13 H 0.071 0.929 14 C -0.012 4.012 15 N -0.931 5.931 16 Si 0.911 3.089 17 H -0.285 1.285 18 H -0.290 1.290 19 H -0.285 1.285 20 C -0.072 4.072 21 C -0.112 4.112 22 C -0.119 4.119 23 C -0.128 4.128 24 C -0.120 4.120 25 C -0.119 4.119 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.399 0.601 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.386 0.614 39 H 0.257 0.743 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.153 5.223 29.537 30.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.073 4.073 3 H 0.097 0.903 4 C -0.133 4.133 5 C -0.182 4.182 6 C 0.293 3.707 7 O -0.420 6.420 8 N -0.377 5.377 9 C -0.014 4.014 10 C 0.017 3.983 11 N -0.375 5.375 12 C -0.376 4.376 13 H 0.089 0.911 14 C -0.209 4.209 15 N -0.579 5.579 16 Si 0.742 3.258 17 H -0.212 1.212 18 H -0.216 1.216 19 H -0.212 1.212 20 C -0.072 4.072 21 C -0.130 4.130 22 C -0.137 4.137 23 C -0.146 4.146 24 C -0.138 4.138 25 C -0.137 4.137 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.233 0.767 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.041 0.959 37 H 0.042 0.958 38 H 0.220 0.780 39 H 0.067 0.933 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.749 4.558 29.451 30.177 hybrid contribution -0.183 0.484 -1.021 1.144 sum -4.932 5.042 28.430 29.291 Atomic orbital electron populations 1.21920 0.94209 1.02363 1.01923 1.20223 0.96071 0.99100 0.91881 0.90269 1.21388 1.02119 0.98998 0.90757 1.21743 1.02894 1.00584 0.92943 1.20677 0.79832 0.85472 0.84700 1.90714 1.40611 1.23879 1.86812 1.45985 1.57743 1.27832 1.06153 1.21561 0.99704 0.96583 0.83512 1.20754 0.96918 0.94728 0.85931 1.42188 1.66810 1.28117 1.00362 1.19151 1.29686 1.05380 0.83399 0.91083 1.24790 1.00681 0.97384 0.98015 1.69659 1.41789 1.17712 1.28714 0.86212 0.77726 0.78009 0.83871 1.21197 1.21604 1.21193 1.19866 0.97233 0.94303 0.95821 1.21052 1.00109 0.94363 0.97498 1.21166 0.98003 0.99864 0.94658 1.21140 0.98949 0.94939 0.99536 1.21131 1.00056 0.95010 0.97646 1.21084 0.98203 0.99893 0.94500 0.91917 0.92306 0.92599 0.90951 0.90885 0.88729 0.88947 0.76720 0.91403 0.91391 0.95854 0.95849 0.78005 0.93301 0.85998 0.86161 0.86326 0.86242 0.86172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 8.76 37.16 0.33 -0.64 16 2 C -0.05 -0.41 2.56 -91.77 -0.24 -0.64 16 3 H 0.08 0.52 7.88 -51.93 -0.41 0.11 16 4 C -0.09 -0.90 3.72 -26.73 -0.10 -1.00 16 5 C -0.14 -1.26 5.46 -27.88 -0.15 -1.41 16 6 C 0.51 6.98 7.83 -10.98 -0.09 6.89 16 7 O -0.54 -9.91 15.98 5.56 0.09 -9.83 16 8 N -0.73 -9.74 5.56 -60.29 -0.33 -10.08 16 9 C 0.11 1.92 5.79 -4.04 -0.02 1.89 16 10 C 0.14 2.85 6.37 -4.04 -0.03 2.83 16 11 N -0.73 -18.71 5.60 -59.91 -0.34 -19.04 16 12 C -0.25 -6.89 9.99 -15.06 -0.15 -7.04 16 13 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 14 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 15 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 16 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 C -0.07 -0.63 4.78 -104.62 -0.50 -1.13 16 21 C -0.11 -0.99 8.76 -39.58 -0.35 -1.34 16 22 C -0.12 -0.99 10.05 -39.58 -0.40 -1.38 16 23 C -0.13 -1.00 10.05 -39.58 -0.40 -1.40 16 24 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 25 C -0.12 -0.98 9.67 -39.58 -0.38 -1.36 16 26 H 0.06 0.35 6.57 -51.93 -0.34 0.01 16 27 H 0.06 0.40 7.38 -51.93 -0.38 0.02 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 30 H 0.07 0.78 7.54 -51.93 -0.39 0.39 16 31 H 0.09 0.66 6.57 -51.93 -0.34 0.32 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.40 4.10 8.47 -40.82 -0.35 3.75 16 34 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.39 10.50 7.67 -40.82 -0.31 10.18 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.12 0.99 7.16 -52.48 -0.38 0.62 16 41 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.12 0.70 8.06 -52.48 -0.42 0.27 16 43 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 44 H 0.12 0.79 7.95 -52.48 -0.42 0.37 16 LS Contribution 364.84 15.07 5.50 5.50 Total: -1.00 -33.84 364.84 -9.44 -43.27 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -7.09 Total: 8.05 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -2.97 Total: -7.52 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 0.05 Total: -56.81 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.84 -9.44 -43.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134806486.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.593 kcal (2) G-P(sol) polarization free energy of solvation -33.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds