Wall clock time and date at job start Tue Mar 31 2020 07:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53006 * 109.46846 * 65.00509 * 4 2 1 6 6 C 1.50701 * 109.47024 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00074 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99965 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99736 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.46978 * 180.02562 * 9 8 6 11 11 N 1.46492 * 109.47218 * 180.02562 * 10 9 8 12 12 C 1.36940 * 120.00125 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00122 * 359.97438 * 12 11 10 14 14 C 1.38812 * 120.00221 * 180.02562 * 12 11 10 15 15 N 1.31623 * 120.00006 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00336 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47149 * 59.99025 * 16 14 12 18 18 H 1.48488 * 109.47442 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46963 * 299.99551 * 16 14 12 20 20 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 21 21 C 1.38237 * 119.99747 * 59.72563 * 20 2 1 22 22 C 1.38240 * 119.99788 * 179.81066 * 21 20 2 23 23 C 1.38236 * 119.99657 * 0.39831 * 22 21 20 24 24 C 1.38230 * 120.00403 * 359.85459 * 23 22 21 25 25 C 1.38232 * 120.00112 * 240.00114 * 20 2 1 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 30 30 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 31 31 H 1.09002 * 109.46824 * 299.99583 * 5 4 2 32 32 H 1.09001 * 109.47241 * 59.99481 * 5 4 2 33 33 H 0.97002 * 119.99484 * 0.02562 * 8 6 5 34 34 H 1.09000 * 109.47590 * 300.00511 * 9 8 6 35 35 H 1.09001 * 109.47111 * 60.00822 * 9 8 6 36 36 H 1.09000 * 109.47254 * 300.00566 * 10 9 8 37 37 H 1.09001 * 109.46896 * 59.99897 * 10 9 8 38 38 H 0.97002 * 120.00539 * 0.02562 * 11 10 9 39 39 H 0.96993 * 119.99989 * 180.02562 * 15 14 12 40 40 H 1.08003 * 120.00234 * 0.02562 * 21 20 2 41 41 H 1.07995 * 119.99993 * 180.23158 * 22 21 20 42 42 H 1.08005 * 119.99783 * 179.83592 * 23 22 21 43 43 H 1.08000 * 120.00473 * 179.97438 * 24 23 22 44 44 H 1.08005 * 119.99991 * 359.97438 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6354 0.0689 -2.4953 6 6 2.1383 -0.6412 -3.7257 7 8 2.7588 -1.6775 -3.6167 8 7 1.8975 -0.1252 -4.9473 9 6 2.3869 -0.8152 -6.1433 10 6 1.9821 -0.0251 -7.3895 11 7 2.4709 -0.7154 -8.5855 12 6 2.2272 -0.1907 -9.8267 13 1 1.6742 0.7319 -9.9238 14 6 2.6899 -0.8450 -10.9601 15 7 3.3634 -1.9697 -10.8418 16 14 2.3568 -0.1296 -12.6531 17 1 2.9629 1.2228 -12.7470 18 1 2.9521 -1.0114 -13.6890 19 1 0.8909 -0.0311 -12.8692 20 6 2.0323 -0.7104 1.2305 21 6 1.6936 -2.0322 1.4521 22 6 2.1576 -2.6850 2.5788 23 6 2.9535 -2.0136 3.4881 24 6 3.2878 -0.6903 3.2691 25 6 2.8270 -0.0386 2.1405 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 3.1264 -0.7995 -1.2055 30 1 1.6055 -1.7198 -1.2951 31 1 0.5490 0.1471 -2.5390 32 1 2.0700 1.0675 -2.4494 33 1 1.4009 0.7035 -5.0344 34 1 3.4733 -0.8924 -6.0994 35 1 1.9532 -1.8142 -6.1894 36 1 0.8958 0.0524 -7.4336 37 1 2.4160 0.9737 -7.3431 38 1 2.9673 -1.5443 -8.4984 39 1 3.6870 -2.4268 -11.6337 40 1 1.0694 -2.5559 0.7432 41 1 1.8961 -3.7187 2.7501 42 1 3.3138 -2.5228 4.3697 43 1 3.9092 -0.1656 3.9797 44 1 3.0883 0.9953 1.9693 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134806486.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:12 Heat of formation + Delta-G solvation = -46.158560 kcal Electronic energy + Delta-G solvation = -21526.324457 eV Core-core repulsion = 18248.885573 eV Total energy + Delta-G solvation = -3277.438884 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 10.06 seconds Orbital eigenvalues (eV) -40.90037 -40.22835 -37.43058 -36.73281 -35.46109 -33.23892 -32.27481 -31.74389 -30.01878 -29.14795 -26.41218 -25.29442 -23.83363 -23.27986 -22.90899 -21.33399 -20.60058 -19.32120 -18.23820 -17.55574 -16.96412 -16.90869 -16.49479 -16.19899 -15.95932 -15.62403 -15.28806 -15.03770 -14.73211 -14.71254 -14.38484 -14.15820 -14.07251 -13.54926 -13.12365 -13.04909 -13.03627 -12.74019 -12.63436 -12.51425 -12.41512 -12.12374 -12.08282 -11.87179 -11.81375 -11.50047 -11.35740 -10.98138 -10.90605 -10.11227 -9.77887 -9.54803 -9.07308 -7.97122 -5.28886 0.49885 0.54062 1.48157 1.52099 1.58288 1.68272 2.16564 2.58408 2.92658 3.36758 3.70648 3.73916 3.91929 4.03607 4.15640 4.17046 4.18664 4.22168 4.24364 4.32898 4.45423 4.54508 4.59424 4.60230 4.69053 4.72983 4.75897 5.04012 5.05518 5.08025 5.10517 5.13671 5.21991 5.24450 5.37209 5.43393 5.45675 5.49958 5.63620 5.66957 5.80404 6.17582 6.23377 6.60223 7.29299 7.30716 8.01556 8.24355 9.26343 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.045755 B = 0.001971 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.810223 B =14205.959342 C =14470.385840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.046 4.046 3 H 0.096 0.904 4 C -0.090 4.090 5 C -0.129 4.129 6 C 0.503 3.497 7 O -0.594 6.594 8 N -0.713 5.713 9 C 0.127 3.873 10 C 0.149 3.851 11 N -0.748 5.748 12 C -0.250 4.250 13 H 0.084 0.916 14 C -0.079 4.079 15 N -0.971 5.971 16 Si 0.981 3.019 17 H -0.275 1.275 18 H -0.297 1.297 19 H -0.275 1.275 20 C -0.085 4.085 21 C -0.130 4.130 22 C -0.133 4.133 23 C -0.137 4.137 24 C -0.129 4.129 25 C -0.130 4.130 26 H 0.077 0.923 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.419 0.581 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.373 0.627 39 H 0.252 0.748 40 H 0.120 0.880 41 H 0.131 0.869 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.359 7.715 30.427 32.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.064 4.064 3 H 0.114 0.886 4 C -0.128 4.128 5 C -0.168 4.168 6 C 0.291 3.709 7 O -0.475 6.475 8 N -0.366 5.366 9 C 0.001 3.999 10 C 0.023 3.977 11 N -0.392 5.392 12 C -0.381 4.381 13 H 0.102 0.898 14 C -0.271 4.271 15 N -0.622 5.622 16 Si 0.809 3.191 17 H -0.201 1.201 18 H -0.223 1.223 19 H -0.201 1.201 20 C -0.085 4.085 21 C -0.148 4.148 22 C -0.151 4.151 23 C -0.155 4.155 24 C -0.146 4.146 25 C -0.148 4.148 26 H 0.096 0.904 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.256 0.744 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.204 0.796 39 H 0.061 0.939 40 H 0.138 0.862 41 H 0.149 0.851 42 H 0.154 0.846 43 H 0.157 0.843 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.004 7.123 30.380 31.776 hybrid contribution 0.192 -0.294 -1.186 1.236 sum -5.812 6.829 29.194 30.540 Atomic orbital electron populations 1.21919 0.93283 1.02204 1.02862 1.20175 0.96722 0.99352 0.90149 0.88591 1.21302 1.00540 0.98675 0.92305 1.21786 1.04619 1.00939 0.89477 1.21613 0.78634 0.84870 0.85737 1.90701 1.42937 1.26373 1.87488 1.45811 1.57612 1.28276 1.04916 1.21107 0.98448 0.95856 0.84450 1.20855 0.97414 0.94837 0.84641 1.42443 1.66966 1.28084 1.01668 1.19634 1.28616 1.05448 0.84446 0.89813 1.25710 1.01236 0.98035 1.02108 1.69837 1.43583 1.19401 1.29329 0.85099 0.77904 0.77297 0.78753 1.20071 1.22335 1.20054 1.20082 0.97549 0.94383 0.96511 1.21208 1.00736 0.94939 0.97942 1.21418 0.98259 1.00628 0.94765 1.21435 0.98737 0.95288 1.00051 1.21454 1.00043 0.95173 0.97972 1.21367 0.98023 1.00806 0.94560 0.90397 0.93079 0.92184 0.93306 0.92772 0.85782 0.85850 0.74417 0.93307 0.93258 0.94391 0.94405 0.79552 0.93907 0.86171 0.85084 0.84586 0.84332 0.84546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 8.76 71.98 0.63 -0.95 16 2 C -0.05 -0.60 2.56 -11.54 -0.03 -0.63 16 3 H 0.10 0.96 7.88 -2.39 -0.02 0.94 16 4 C -0.09 -1.64 3.72 30.60 0.11 -1.52 16 5 C -0.13 -1.95 5.46 29.85 0.16 -1.79 16 6 C 0.50 13.29 7.83 87.66 0.69 13.97 16 7 O -0.59 -22.14 15.98 -3.03 -0.05 -22.19 16 8 N -0.71 -17.95 5.56 -463.06 -2.57 -20.53 16 9 C 0.13 4.39 5.79 86.38 0.50 4.89 16 10 C 0.15 5.69 6.37 86.38 0.55 6.25 16 11 N -0.75 -38.41 5.60 -343.46 -1.92 -40.34 16 12 C -0.25 -13.88 9.99 84.03 0.84 -13.04 16 13 H 0.08 4.34 7.83 -2.91 -0.02 4.31 16 14 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 15 N -0.97 -60.33 13.06 21.65 0.28 -60.05 16 16 Si 0.98 45.79 29.55 68.60 2.03 47.82 16 17 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 18 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 C -0.09 -1.41 4.78 -19.87 -0.09 -1.51 16 21 C -0.13 -2.33 8.76 22.27 0.20 -2.13 16 22 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 23 C -0.14 -2.05 10.05 22.27 0.22 -1.82 16 24 C -0.13 -1.85 10.05 22.27 0.22 -1.62 16 25 C -0.13 -1.96 9.67 22.27 0.22 -1.74 16 26 H 0.08 0.60 6.57 -2.39 -0.02 0.58 16 27 H 0.05 0.64 7.38 -2.39 -0.02 0.62 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 30 H 0.05 1.18 7.54 -2.39 -0.02 1.16 16 31 H 0.12 1.22 6.57 -2.39 -0.02 1.21 16 32 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.42 7.28 8.47 -92.71 -0.79 6.49 16 34 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.05 1.89 8.14 -2.39 -0.02 1.88 16 36 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.37 20.79 7.67 -92.71 -0.71 20.08 16 39 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 40 H 0.12 2.06 7.16 -2.91 -0.02 2.04 16 41 H 0.13 1.72 8.06 -2.91 -0.02 1.70 16 42 H 0.14 1.44 8.06 -2.91 -0.02 1.41 16 43 H 0.14 1.36 8.06 -2.91 -0.02 1.33 16 44 H 0.14 1.51 7.95 -2.91 -0.02 1.48 16 Total: -1.00 -74.45 364.84 2.17 -72.28 By element: Atomic # 1 Polarization: 31.21 SS G_CDS: -0.51 Total: 30.71 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 4.91 Total: -7.70 kcal Atomic # 7 Polarization: -116.70 SS G_CDS: -4.21 Total: -120.91 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.05 Total: -22.19 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -74.45 2.17 -72.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134806486.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.125 kcal (2) G-P(sol) polarization free energy of solvation -74.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.07 seconds