Wall clock time and date at job start Tue Mar 31 2020 07:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99989 * 2 1 3 5 5 C 1.53000 * 109.47060 * 294.99938 * 4 2 1 6 6 C 1.50703 * 109.47215 * 180.02562 * 5 4 2 7 7 O 1.21284 * 119.99732 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99951 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99800 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47064 * 180.02562 * 9 8 6 11 11 N 1.46499 * 109.47064 * 180.02562 * 10 9 8 12 12 C 1.36937 * 120.00069 * 180.02562 * 11 10 9 13 13 H 1.08006 * 120.00068 * 359.97438 * 12 11 10 14 14 C 1.38811 * 120.00437 * 180.02562 * 12 11 10 15 15 N 1.31626 * 119.99551 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00440 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46947 * 359.97438 * 16 14 12 18 18 H 1.48491 * 109.47463 * 119.99513 * 16 14 12 19 19 H 1.48500 * 109.46899 * 239.99560 * 16 14 12 20 20 C 1.50699 * 109.46866 * 239.99781 * 2 1 3 21 21 C 1.38237 * 119.99936 * 299.72798 * 20 2 1 22 22 C 1.38239 * 120.00019 * 179.79019 * 21 20 2 23 23 C 1.38233 * 119.99539 * 0.43796 * 22 21 20 24 24 C 1.38231 * 120.00493 * 359.81540 * 23 22 21 25 25 C 1.38236 * 119.99974 * 359.97438 * 24 23 22 26 26 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 28 28 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 30 30 H 1.09000 * 109.47325 * 174.99723 * 4 2 1 31 31 H 1.08998 * 109.46849 * 299.99880 * 5 4 2 32 32 H 1.09000 * 109.47227 * 59.99725 * 5 4 2 33 33 H 0.96998 * 120.00136 * 0.02562 * 8 6 5 34 34 H 1.09006 * 109.47268 * 299.99853 * 9 8 6 35 35 H 1.09000 * 109.47553 * 59.99939 * 9 8 6 36 36 H 1.08998 * 109.46849 * 299.99599 * 10 9 8 37 37 H 1.09000 * 109.47218 * 60.00001 * 10 9 8 38 38 H 0.97005 * 120.00389 * 359.97438 * 11 10 9 39 39 H 0.97006 * 119.99460 * 180.02562 * 15 14 12 40 40 H 1.07998 * 120.00490 * 359.97438 * 21 20 2 41 41 H 1.08000 * 120.00241 * 180.27418 * 22 21 20 42 42 H 1.08006 * 119.99896 * 179.83904 * 23 22 21 43 43 H 1.08002 * 120.00573 * 180.02562 * 24 23 22 44 44 H 1.08002 * 120.00273 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6353 0.0690 2.4953 6 6 2.1382 -0.6411 3.7258 7 8 2.7588 -1.6774 3.6168 8 7 1.8983 -0.1245 4.9472 9 6 2.3876 -0.8145 6.1433 10 6 1.9827 -0.0243 7.3894 11 7 2.4726 -0.7140 8.5855 12 6 2.2281 -0.1897 9.8266 13 1 1.6744 0.7326 9.9237 14 6 2.6927 -0.8428 10.9599 15 7 3.3679 -1.9665 10.8416 16 14 2.3597 -0.1272 12.6530 17 1 1.5868 1.1333 12.5143 18 1 1.5790 -1.1010 13.4573 19 1 3.6491 0.1556 13.3331 20 6 2.0323 -0.7105 -1.2304 21 6 1.7030 -2.0356 -1.4463 22 6 2.1601 -2.6860 -2.5772 23 6 2.9541 -2.0140 -3.4876 24 6 3.2878 -0.6905 -3.2691 25 6 2.8270 -0.0387 -2.1405 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6054 -1.7198 1.2952 30 1 3.1264 -0.7995 1.2056 31 1 2.0700 1.0675 2.4493 32 1 0.5490 0.1472 2.5389 33 1 1.4016 0.7041 5.0344 34 1 1.9534 -1.8132 6.1899 35 1 3.4739 -0.8923 6.0991 36 1 2.4167 0.9745 7.3431 37 1 0.8964 0.0531 7.4335 38 1 2.9696 -1.5425 8.4984 39 1 3.6922 -2.4231 11.6336 40 1 1.0861 -2.5618 -0.7330 41 1 1.8991 -3.7200 -2.7481 42 1 3.3134 -2.5229 -4.3698 43 1 3.9077 -0.1652 -3.9806 44 1 3.0874 0.9955 -1.9699 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134806487.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:22 Heat of formation + Delta-G solvation = -24.870819 kcal Electronic energy + Delta-G solvation = -21526.036969 eV Core-core repulsion = 18249.521190 eV Total energy + Delta-G solvation = -3276.515778 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.99432 -39.37977 -36.29597 -35.55554 -33.80947 -31.77673 -31.17284 -31.03115 -29.21926 -27.71980 -25.44270 -23.69202 -23.05572 -22.44280 -21.44190 -20.32241 -19.87948 -17.48956 -17.18904 -16.71760 -15.99429 -15.68975 -15.33267 -15.19007 -14.57135 -14.56266 -14.15403 -13.90890 -13.65918 -13.51788 -13.32097 -13.16595 -12.89784 -12.73660 -12.50923 -12.06267 -11.87923 -11.49361 -11.37804 -11.14387 -11.10736 -10.92231 -10.83195 -10.80962 -10.70531 -10.09416 -9.86308 -9.65093 -9.16909 -8.98458 -8.93746 -8.80574 -6.99852 -5.80283 -3.11012 1.10586 1.15163 2.77604 3.29593 3.41575 3.46945 3.49393 3.54889 4.32354 4.45834 4.57262 4.71175 4.74191 4.80159 4.86161 4.92586 5.08001 5.15556 5.17383 5.27175 5.32382 5.38518 5.49763 5.55102 5.63007 5.64320 5.74403 5.78844 5.80018 5.82713 5.96808 6.00772 6.13073 6.16421 6.22947 6.27001 6.41217 6.51071 6.70654 6.75501 6.76409 7.65292 7.66159 8.36222 8.38627 9.48603 10.03649 10.38305 11.42346 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.045744 B = 0.001971 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.956175 B =14203.577447 C =14468.760268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.054 4.054 3 H 0.079 0.921 4 C -0.095 4.095 5 C -0.142 4.142 6 C 0.507 3.493 7 O -0.543 6.543 8 N -0.726 5.726 9 C 0.110 3.890 10 C 0.145 3.855 11 N -0.730 5.730 12 C -0.244 4.244 13 H 0.072 0.928 14 C -0.013 4.013 15 N -0.930 5.930 16 Si 0.910 3.090 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.291 1.291 20 C -0.072 4.072 21 C -0.112 4.112 22 C -0.119 4.119 23 C -0.128 4.128 24 C -0.120 4.120 25 C -0.119 4.119 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.399 0.601 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.386 0.614 39 H 0.256 0.744 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.190 5.258 -29.579 30.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.073 4.073 3 H 0.097 0.903 4 C -0.133 4.133 5 C -0.182 4.182 6 C 0.293 3.707 7 O -0.420 6.420 8 N -0.377 5.377 9 C -0.014 4.014 10 C 0.017 3.983 11 N -0.375 5.375 12 C -0.375 4.375 13 H 0.090 0.910 14 C -0.209 4.209 15 N -0.578 5.578 16 Si 0.741 3.259 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.218 1.218 20 C -0.072 4.072 21 C -0.130 4.130 22 C -0.137 4.137 23 C -0.146 4.146 24 C -0.138 4.138 25 C -0.137 4.137 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.233 0.767 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.220 0.780 39 H 0.066 0.934 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.794 4.609 -29.500 30.240 hybrid contribution -0.170 0.461 1.026 1.137 sum -4.964 5.070 -28.474 29.345 Atomic orbital electron populations 1.21921 0.94206 1.02362 1.01919 1.20221 0.96077 0.99103 0.91873 0.90269 1.21390 1.02119 0.99001 0.90761 1.21741 1.02895 1.00584 0.92942 1.20678 0.79833 0.85470 0.84700 1.90715 1.40606 1.23885 1.86812 1.45983 1.57755 1.27817 1.06155 1.21563 0.99709 0.96584 0.83510 1.20756 0.96916 0.94738 0.85928 1.42207 1.66703 1.28206 1.00387 1.19244 1.29425 1.05418 0.83379 0.90968 1.24795 1.00695 0.97424 0.98032 1.69687 1.41849 1.17844 1.28464 0.86069 0.77385 0.78053 0.84357 1.20513 1.21770 1.21774 1.19867 0.97248 0.94269 0.95848 1.21052 1.00166 0.94329 0.97467 1.21166 0.98038 0.99889 0.94604 1.21140 0.98925 0.94938 0.99555 1.21131 1.00073 0.95006 0.97638 1.21085 0.98152 0.99910 0.94528 0.91918 0.92599 0.92310 0.90883 0.90949 0.88948 0.88728 0.76719 0.91397 0.91392 0.95839 0.95835 0.78008 0.93409 0.85996 0.86160 0.86326 0.86242 0.86171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 8.76 37.16 0.33 -0.64 16 2 C -0.05 -0.41 2.56 -91.77 -0.24 -0.64 16 3 H 0.08 0.52 7.88 -51.93 -0.41 0.11 16 4 C -0.09 -0.90 3.71 -26.73 -0.10 -1.00 16 5 C -0.14 -1.26 5.46 -27.88 -0.15 -1.41 16 6 C 0.51 6.97 7.83 -10.98 -0.09 6.88 16 7 O -0.54 -9.91 15.98 5.55 0.09 -9.82 16 8 N -0.73 -9.73 5.56 -60.29 -0.33 -10.06 16 9 C 0.11 1.91 5.79 -4.04 -0.02 1.89 16 10 C 0.14 2.85 6.37 -4.04 -0.03 2.82 16 11 N -0.73 -18.70 5.60 -59.91 -0.34 -19.03 16 12 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 13 H 0.07 1.95 7.83 -52.48 -0.41 1.53 16 14 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 15 N -0.93 -28.41 13.06 55.49 0.72 -27.68 16 16 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 C -0.07 -0.63 4.78 -104.62 -0.50 -1.13 16 21 C -0.11 -0.99 8.76 -39.58 -0.35 -1.34 16 22 C -0.12 -0.99 10.05 -39.58 -0.40 -1.38 16 23 C -0.13 -1.00 10.05 -39.59 -0.40 -1.40 16 24 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 25 C -0.12 -0.97 9.67 -39.58 -0.38 -1.36 16 26 H 0.06 0.35 6.56 -51.93 -0.34 0.01 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.40 7.41 -51.93 -0.38 0.02 16 29 H 0.07 0.78 7.51 -51.93 -0.39 0.39 16 30 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 0.66 6.56 -51.93 -0.34 0.32 16 33 H 0.40 4.09 8.47 -40.82 -0.35 3.74 16 34 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.39 10.49 7.67 -40.82 -0.31 10.18 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.12 0.99 7.16 -52.49 -0.38 0.62 16 41 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.12 0.70 8.06 -52.48 -0.42 0.27 16 43 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 44 H 0.12 0.79 7.95 -52.49 -0.42 0.37 16 LS Contribution 364.84 15.07 5.50 5.50 Total: -1.00 -33.88 364.84 -9.44 -43.32 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -7.09 Total: 7.96 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -2.97 Total: -7.51 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: 0.05 Total: -56.78 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.09 Total: -9.82 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.88 -9.44 -43.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134806487.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.448 kcal (2) G-P(sol) polarization free energy of solvation -33.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds