Wall clock time and date at job start Tue Mar 31 2020 07:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99989 * 2 1 3 5 5 C 1.53000 * 109.47060 * 294.99938 * 4 2 1 6 6 C 1.50703 * 109.47215 * 180.02562 * 5 4 2 7 7 O 1.21284 * 119.99732 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99951 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99800 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47064 * 180.02562 * 9 8 6 11 11 N 1.46499 * 109.47064 * 180.02562 * 10 9 8 12 12 C 1.36937 * 120.00069 * 180.02562 * 11 10 9 13 13 H 1.08006 * 120.00068 * 359.97438 * 12 11 10 14 14 C 1.38811 * 120.00437 * 180.02562 * 12 11 10 15 15 N 1.31626 * 119.99551 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00440 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46947 * 359.97438 * 16 14 12 18 18 H 1.48491 * 109.47463 * 119.99513 * 16 14 12 19 19 H 1.48500 * 109.46899 * 239.99560 * 16 14 12 20 20 C 1.50699 * 109.46866 * 239.99781 * 2 1 3 21 21 C 1.38237 * 119.99936 * 299.72798 * 20 2 1 22 22 C 1.38239 * 120.00019 * 179.79019 * 21 20 2 23 23 C 1.38233 * 119.99539 * 0.43796 * 22 21 20 24 24 C 1.38231 * 120.00493 * 359.81540 * 23 22 21 25 25 C 1.38236 * 119.99974 * 359.97438 * 24 23 22 26 26 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 28 28 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 30 30 H 1.09000 * 109.47325 * 174.99723 * 4 2 1 31 31 H 1.08998 * 109.46849 * 299.99880 * 5 4 2 32 32 H 1.09000 * 109.47227 * 59.99725 * 5 4 2 33 33 H 0.96998 * 120.00136 * 0.02562 * 8 6 5 34 34 H 1.09006 * 109.47268 * 299.99853 * 9 8 6 35 35 H 1.09000 * 109.47553 * 59.99939 * 9 8 6 36 36 H 1.08998 * 109.46849 * 299.99599 * 10 9 8 37 37 H 1.09000 * 109.47218 * 60.00001 * 10 9 8 38 38 H 0.97005 * 120.00389 * 359.97438 * 11 10 9 39 39 H 0.97006 * 119.99460 * 180.02562 * 15 14 12 40 40 H 1.07998 * 120.00490 * 359.97438 * 21 20 2 41 41 H 1.08000 * 120.00241 * 180.27418 * 22 21 20 42 42 H 1.08006 * 119.99896 * 179.83904 * 23 22 21 43 43 H 1.08002 * 120.00573 * 180.02562 * 24 23 22 44 44 H 1.08002 * 120.00273 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6353 0.0690 2.4953 6 6 2.1382 -0.6411 3.7258 7 8 2.7588 -1.6774 3.6168 8 7 1.8983 -0.1245 4.9472 9 6 2.3876 -0.8145 6.1433 10 6 1.9827 -0.0243 7.3894 11 7 2.4726 -0.7140 8.5855 12 6 2.2281 -0.1897 9.8266 13 1 1.6744 0.7326 9.9237 14 6 2.6927 -0.8428 10.9599 15 7 3.3679 -1.9665 10.8416 16 14 2.3597 -0.1272 12.6530 17 1 1.5868 1.1333 12.5143 18 1 1.5790 -1.1010 13.4573 19 1 3.6491 0.1556 13.3331 20 6 2.0323 -0.7105 -1.2304 21 6 1.7030 -2.0356 -1.4463 22 6 2.1601 -2.6860 -2.5772 23 6 2.9541 -2.0140 -3.4876 24 6 3.2878 -0.6905 -3.2691 25 6 2.8270 -0.0387 -2.1405 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6054 -1.7198 1.2952 30 1 3.1264 -0.7995 1.2056 31 1 2.0700 1.0675 2.4493 32 1 0.5490 0.1472 2.5389 33 1 1.4016 0.7041 5.0344 34 1 1.9534 -1.8132 6.1899 35 1 3.4739 -0.8923 6.0991 36 1 2.4167 0.9745 7.3431 37 1 0.8964 0.0531 7.4335 38 1 2.9696 -1.5425 8.4984 39 1 3.6922 -2.4231 11.6336 40 1 1.0861 -2.5618 -0.7330 41 1 1.8991 -3.7200 -2.7481 42 1 3.3134 -2.5229 -4.3698 43 1 3.9077 -0.1652 -3.9806 44 1 3.0874 0.9955 -1.9699 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134806487.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:19 Heat of formation + Delta-G solvation = -46.394707 kcal Electronic energy + Delta-G solvation = -21526.970314 eV Core-core repulsion = 18249.521190 eV Total energy + Delta-G solvation = -3277.449124 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.90002 -40.22796 -37.43263 -36.73344 -35.46342 -33.23994 -32.27386 -31.74359 -30.02102 -29.15090 -26.41283 -25.29810 -23.83620 -23.28037 -22.90884 -21.33450 -20.60019 -19.32577 -18.23864 -17.55603 -16.96399 -16.91262 -16.49275 -16.19907 -15.96093 -15.62413 -15.30002 -15.02885 -14.73549 -14.71345 -14.38328 -14.15656 -14.07476 -13.55287 -13.12751 -13.06237 -13.04693 -12.74054 -12.69517 -12.48429 -12.41563 -12.08470 -12.04987 -11.86222 -11.81422 -11.49996 -11.35623 -11.01242 -10.90611 -10.11235 -9.77895 -9.54805 -9.07563 -7.97831 -5.29411 0.49861 0.54065 1.48171 1.49731 1.59891 1.68270 2.16438 2.57950 2.92642 3.36542 3.70666 3.73886 3.91919 4.03523 4.15406 4.17033 4.18662 4.22152 4.24299 4.32956 4.45381 4.54484 4.59389 4.60262 4.69104 4.72993 4.75967 5.03990 5.05525 5.08001 5.10507 5.13643 5.21987 5.24471 5.37187 5.43435 5.45764 5.50119 5.63627 5.66956 5.80391 6.17575 6.23105 6.60259 7.28972 7.30714 8.01116 8.23840 9.26095 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.045744 B = 0.001971 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.956175 B =14203.577447 C =14468.760268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.046 4.046 3 H 0.096 0.904 4 C -0.090 4.090 5 C -0.129 4.129 6 C 0.503 3.497 7 O -0.594 6.594 8 N -0.713 5.713 9 C 0.126 3.874 10 C 0.149 3.851 11 N -0.748 5.748 12 C -0.247 4.247 13 H 0.085 0.915 14 C -0.080 4.080 15 N -0.972 5.972 16 Si 0.981 3.019 17 H -0.261 1.261 18 H -0.293 1.293 19 H -0.294 1.294 20 C -0.085 4.085 21 C -0.130 4.130 22 C -0.133 4.133 23 C -0.137 4.137 24 C -0.129 4.129 25 C -0.130 4.130 26 H 0.077 0.923 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.419 0.581 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.038 0.962 37 H 0.039 0.961 38 H 0.373 0.627 39 H 0.252 0.748 40 H 0.120 0.880 41 H 0.131 0.869 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.411 7.771 -30.497 32.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.064 4.064 3 H 0.114 0.886 4 C -0.128 4.128 5 C -0.168 4.168 6 C 0.291 3.709 7 O -0.475 6.475 8 N -0.366 5.366 9 C 0.001 3.999 10 C 0.022 3.978 11 N -0.392 5.392 12 C -0.379 4.379 13 H 0.102 0.898 14 C -0.272 4.272 15 N -0.622 5.622 16 Si 0.809 3.191 17 H -0.185 1.185 18 H -0.221 1.221 19 H -0.221 1.221 20 C -0.085 4.085 21 C -0.148 4.148 22 C -0.151 4.151 23 C -0.155 4.155 24 C -0.146 4.146 25 C -0.148 4.148 26 H 0.096 0.904 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.256 0.744 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.204 0.796 39 H 0.061 0.939 40 H 0.138 0.862 41 H 0.149 0.851 42 H 0.154 0.846 43 H 0.157 0.843 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.063 7.194 -30.457 31.877 hybrid contribution 0.210 -0.325 1.199 1.260 sum -5.852 6.869 -29.257 30.617 Atomic orbital electron populations 1.21919 0.93283 1.02199 1.02860 1.20174 0.96726 0.99355 0.90143 0.88591 1.21304 1.00539 0.98679 0.92308 1.21784 1.04620 1.00939 0.89476 1.21613 0.78636 0.84867 0.85738 1.90703 1.42933 1.26380 1.87488 1.45809 1.57622 1.28260 1.04917 1.21109 0.98452 0.95860 0.84452 1.20858 0.97422 0.94847 0.84628 1.42461 1.66851 1.28169 1.01693 1.19710 1.28302 1.05433 0.84420 0.89758 1.25708 1.01273 0.98086 1.02100 1.69856 1.43645 1.19542 1.29159 0.84969 0.77006 0.77816 0.79294 1.18487 1.22066 1.22085 1.20082 0.97560 0.94342 0.96539 1.21206 1.00802 0.94909 0.97909 1.21417 0.98290 1.00654 0.94708 1.21435 0.98712 0.95288 1.00072 1.21454 1.00056 0.95168 0.97965 1.21368 0.97971 1.00825 0.94587 0.90393 0.92185 0.93089 0.92767 0.93306 0.85851 0.85781 0.74414 0.93264 0.93299 0.94387 0.94354 0.79554 0.93923 0.86184 0.85084 0.84585 0.84330 0.84542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 8.76 71.98 0.63 -0.95 16 2 C -0.05 -0.60 2.56 -11.54 -0.03 -0.63 16 3 H 0.10 0.96 7.88 -2.39 -0.02 0.94 16 4 C -0.09 -1.63 3.71 30.59 0.11 -1.52 16 5 C -0.13 -1.94 5.46 29.85 0.16 -1.78 16 6 C 0.50 13.27 7.83 87.66 0.69 13.95 16 7 O -0.59 -22.12 15.98 -3.04 -0.05 -22.17 16 8 N -0.71 -17.91 5.56 -463.05 -2.57 -20.49 16 9 C 0.13 4.37 5.79 86.38 0.50 4.87 16 10 C 0.15 5.68 6.37 86.38 0.55 6.23 16 11 N -0.75 -38.36 5.60 -343.45 -1.92 -40.28 16 12 C -0.25 -13.71 9.99 84.03 0.84 -12.87 16 13 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 14 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 15 N -0.97 -60.38 13.06 21.65 0.28 -60.09 16 16 Si 0.98 45.83 29.55 68.60 2.03 47.86 16 17 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 18 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 19 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 20 C -0.09 -1.41 4.78 -19.87 -0.09 -1.50 16 21 C -0.13 -2.33 8.76 22.27 0.20 -2.14 16 22 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 23 C -0.14 -2.04 10.05 22.27 0.22 -1.82 16 24 C -0.13 -1.85 10.05 22.27 0.22 -1.62 16 25 C -0.13 -1.96 9.67 22.27 0.22 -1.74 16 26 H 0.08 0.60 6.56 -2.39 -0.02 0.58 16 27 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.05 0.64 7.41 -2.39 -0.02 0.62 16 29 H 0.05 1.18 7.51 -2.38 -0.02 1.16 16 30 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 31 H 0.12 1.19 8.14 -2.39 -0.02 1.18 16 32 H 0.12 1.22 6.56 -2.39 -0.02 1.20 16 33 H 0.42 7.25 8.47 -92.71 -0.79 6.47 16 34 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 35 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.37 20.77 7.67 -92.70 -0.71 20.06 16 39 H 0.25 15.11 8.31 -92.70 -0.77 14.33 16 40 H 0.12 2.06 7.16 -2.91 -0.02 2.04 16 41 H 0.13 1.72 8.06 -2.91 -0.02 1.70 16 42 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 43 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 44 H 0.14 1.50 7.95 -2.91 -0.02 1.48 16 Total: -1.00 -74.55 364.84 2.17 -72.39 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: -0.51 Total: 30.40 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: 4.91 Total: -7.61 kcal Atomic # 7 Polarization: -116.65 SS G_CDS: -4.21 Total: -120.86 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.05 Total: -22.17 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -74.55 2.17 -72.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134806487.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.991 kcal (2) G-P(sol) polarization free energy of solvation -74.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds