Wall clock time and date at job start Tue Mar 31 2020 06:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47077 * 2 1 4 4 C 1.52995 * 109.47398 * 240.00015 * 2 1 3 5 5 C 1.53000 * 109.46960 * 299.99824 * 4 2 1 6 6 C 1.52991 * 109.47211 * 300.00005 * 5 4 2 7 7 C 1.52999 * 109.47517 * 60.00118 * 6 5 4 8 8 C 1.53000 * 109.46783 * 300.00143 * 7 6 5 9 9 H 1.09003 * 109.47044 * 299.99585 * 8 7 6 10 10 C 1.53004 * 109.47173 * 179.97438 * 8 7 6 11 11 N 1.46503 * 109.46750 * 65.00059 * 10 8 7 12 12 C 1.39128 * 119.99330 * 180.02562 * 11 10 8 13 13 C 1.39165 * 119.63385 * 359.97438 * 12 11 10 14 14 C 1.38211 * 119.16743 * 179.97438 * 13 12 11 15 15 C 1.39442 * 118.45433 * 0.02562 * 14 13 12 16 16 O 1.35816 * 120.40832 * 179.97438 * 15 14 13 17 17 C 1.34804 * 116.99522 * 354.52540 * 16 15 14 18 18 H 1.07993 * 120.00691 * 5.05631 * 17 16 15 19 19 C 1.38634 * 119.99525 * 185.05383 * 17 16 15 20 20 N 1.31574 * 120.00444 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99807 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46954 * 90.00273 * 21 19 17 23 23 H 1.48500 * 109.47121 * 210.00041 * 21 19 17 24 24 H 1.48499 * 109.47172 * 330.00074 * 21 19 17 25 25 C 1.38684 * 119.19066 * 0.02562 * 15 14 13 26 26 N 1.31931 * 120.75428 * 359.74260 * 25 15 14 27 27 H 1.08993 * 109.47270 * 300.00316 * 1 2 3 28 28 H 1.09007 * 109.46738 * 60.00224 * 1 2 3 29 29 H 1.08994 * 109.46794 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47110 * 59.99665 * 4 2 1 31 31 H 1.09000 * 109.47413 * 179.97438 * 4 2 1 32 32 H 1.09003 * 109.47044 * 60.00088 * 5 4 2 33 33 H 1.09004 * 109.47345 * 179.97438 * 5 4 2 34 34 H 1.09003 * 109.47185 * 299.99997 * 6 5 4 35 35 H 1.09007 * 109.47021 * 179.97438 * 6 5 4 36 36 H 1.08997 * 109.47471 * 180.02562 * 7 6 5 37 37 H 1.09003 * 109.46992 * 59.99761 * 7 6 5 38 38 H 1.09001 * 109.46793 * 184.99591 * 10 8 7 39 39 H 1.08992 * 109.47162 * 304.99936 * 10 8 7 40 40 H 0.96994 * 120.00343 * 359.97438 * 11 10 8 41 41 H 1.07998 * 120.41629 * 0.02562 * 13 12 11 42 42 H 1.08005 * 120.76998 * 179.97438 * 14 13 12 43 43 H 0.96996 * 120.00531 * 180.02562 * 20 19 17 44 44 H 1.07997 * 119.62004 * 179.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5301 -2.1637 -1.2491 6 6 2.0401 -2.8849 0.0000 7 6 1.5300 -2.1637 1.2493 8 6 2.0400 -0.7212 1.2493 9 1 3.1300 -0.7212 1.2493 10 6 1.5295 0.0002 2.4982 11 7 2.1132 -0.6172 3.6917 12 6 1.7938 -0.1285 4.9545 13 6 0.9194 0.9474 5.0751 14 6 0.6083 1.4247 6.3343 15 6 1.1874 0.8054 7.4413 16 8 0.9098 1.2425 8.6969 17 6 0.1541 2.3535 8.8050 18 1 -0.2691 2.8069 7.9210 19 6 -0.0798 2.9141 10.0512 20 7 0.4362 2.3621 11.1283 21 14 -1.1264 4.4542 10.2010 22 1 -2.5494 4.0700 10.3821 23 1 -0.6749 5.2475 11.3723 24 1 -0.9868 5.2694 8.9676 25 6 2.0511 -0.2617 7.2446 26 7 2.3225 -0.6945 6.0282 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.6767 -0.2074 -2.1392 31 1 3.1300 -0.7208 -1.2494 32 1 0.4401 -2.1637 -1.2492 33 1 1.8931 -2.6775 -2.1394 34 1 3.1301 -2.8849 0.0001 35 1 1.6763 -3.9125 0.0003 36 1 1.8937 -2.6773 2.1393 37 1 0.4400 -2.1638 1.2493 38 1 1.8179 1.0505 2.4545 39 1 0.4432 -0.0767 2.5437 40 1 2.7218 -1.3671 3.6014 41 1 0.4887 1.4031 4.1958 42 1 -0.0669 2.2586 6.4579 43 1 0.2722 2.7541 12.0003 44 1 2.5038 -0.7462 8.0970 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162525461.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:23 Heat of formation + Delta-G solvation = -12.786711 kcal Electronic energy + Delta-G solvation = -22697.992033 eV Core-core repulsion = 19422.000261 eV Total energy + Delta-G solvation = -3275.991772 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 10.77 seconds Orbital eigenvalues (eV) -39.95793 -39.34278 -37.23278 -35.04353 -32.42226 -32.20762 -31.29903 -31.12925 -28.22748 -27.00065 -25.46352 -24.95659 -22.85964 -22.49366 -21.59259 -20.85861 -18.74944 -18.07240 -17.35132 -16.25960 -16.13639 -15.61661 -15.17659 -14.58411 -14.49602 -14.39880 -14.04755 -13.90033 -13.54841 -13.38549 -13.09684 -12.92657 -12.77689 -12.30424 -12.30423 -12.02994 -11.75341 -11.67521 -11.63652 -11.43591 -11.29338 -11.09477 -10.98341 -10.48946 -10.43271 -10.24816 -10.17413 -9.62429 -9.27139 -8.93442 -8.71704 -8.51684 -6.62018 -6.40045 -3.97239 2.06608 2.45280 3.14483 3.15412 3.19909 3.64216 4.00084 4.37733 4.43275 4.49629 4.70296 4.89833 4.94701 5.07470 5.09759 5.11043 5.13504 5.22720 5.33354 5.36972 5.43864 5.46935 5.54475 5.59718 5.70335 5.72346 5.75215 5.78838 5.86684 5.87583 5.95665 6.00058 6.01872 6.06249 6.09522 6.17648 6.33458 6.55894 6.76257 7.13932 7.22551 7.29960 7.71953 8.01288 8.18151 8.94322 9.05353 9.75393 10.77996 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.032391 B = 0.002804 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.240324 B = 9981.592415 C =10639.086304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.083 4.083 3 H 0.071 0.929 4 C -0.113 4.113 5 C -0.122 4.122 6 C -0.119 4.119 7 C -0.116 4.116 8 C -0.091 4.091 9 H 0.075 0.925 10 C 0.142 3.858 11 N -0.739 5.739 12 C 0.310 3.690 13 C -0.184 4.184 14 C -0.155 4.155 15 C 0.064 3.936 16 O -0.179 6.179 17 C -0.390 4.390 18 H 0.088 0.912 19 C 0.038 3.962 20 N -0.864 5.864 21 Si 0.939 3.061 22 H -0.274 1.274 23 H -0.278 1.278 24 H -0.269 1.269 25 C 0.068 3.932 26 N -0.503 5.503 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.052 0.948 39 H 0.056 0.944 40 H 0.395 0.605 41 H 0.115 0.885 42 H 0.135 0.865 43 H 0.269 0.731 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.015 -5.420 -23.186 23.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.102 4.102 3 H 0.090 0.910 4 C -0.151 4.151 5 C -0.159 4.159 6 C -0.157 4.157 7 C -0.154 4.154 8 C -0.110 4.110 9 H 0.093 0.907 10 C 0.016 3.984 11 N -0.379 5.379 12 C 0.078 3.922 13 C -0.209 4.209 14 C -0.183 4.183 15 C 0.008 3.992 16 O -0.082 6.082 17 C -0.467 4.467 18 H 0.105 0.895 19 C -0.165 4.165 20 N -0.500 5.500 21 Si 0.764 3.236 22 H -0.200 1.200 23 H -0.203 1.203 24 H -0.193 1.193 25 C -0.091 4.091 26 N -0.219 5.219 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.229 0.771 41 H 0.133 0.867 42 H 0.153 0.847 43 H 0.079 0.921 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.517 -6.014 -22.892 23.718 hybrid contribution -0.931 1.323 0.108 1.621 sum 0.586 -4.692 -22.784 23.270 Atomic orbital electron populations 1.22019 0.95175 1.02271 1.01771 1.21043 0.96124 0.99094 0.93950 0.91048 1.21546 1.00509 0.95664 0.97333 1.21578 1.01049 0.95618 0.97673 1.21531 1.00700 0.98780 0.94651 1.21622 1.01212 0.94761 0.97758 1.21351 1.00654 0.95297 0.93662 0.90685 1.21256 0.97490 0.96218 0.83407 1.43952 1.53982 1.38784 1.01161 1.17930 0.95657 0.93056 0.85525 1.21081 1.02808 0.99446 0.97544 1.21402 1.02860 1.02399 0.91602 1.20240 0.96301 0.95998 0.86629 1.83993 1.62993 1.41106 1.20120 1.21224 1.28265 1.02589 0.94595 0.89496 1.25236 0.97967 0.99056 0.94276 1.70037 1.42195 1.39445 0.98311 0.85745 0.79345 0.80095 0.78413 1.19962 1.20292 1.19312 1.21454 0.98486 0.96132 0.93004 1.66930 1.26326 1.30870 0.97808 0.92248 0.92904 0.91955 0.92062 0.92057 0.91695 0.92408 0.92121 0.92175 0.91669 0.91492 0.92954 0.92558 0.77088 0.86694 0.84710 0.92105 0.83167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 8.15 37.16 0.30 -0.88 16 2 C -0.08 -0.64 2.72 -90.62 -0.25 -0.89 16 3 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.11 -0.78 5.45 -26.73 -0.15 -0.92 16 5 C -0.12 -0.83 5.65 -26.74 -0.15 -0.98 16 6 C -0.12 -0.89 5.92 -26.74 -0.16 -1.05 16 7 C -0.12 -1.01 4.80 -26.73 -0.13 -1.14 16 8 C -0.09 -0.80 2.00 -90.62 -0.18 -0.99 16 9 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 10 C 0.14 1.61 3.77 -4.04 -0.02 1.59 16 11 N -0.74 -10.71 5.46 -60.38 -0.33 -11.04 16 12 C 0.31 5.83 7.65 -154.90 -1.19 4.64 16 13 C -0.18 -3.49 9.32 -39.25 -0.37 -3.85 16 14 C -0.16 -3.39 9.25 -39.14 -0.36 -3.76 16 15 C 0.06 1.56 6.67 -38.97 -0.26 1.30 16 16 O -0.18 -5.09 9.77 -0.08 0.00 -5.10 16 17 C -0.39 -10.89 9.50 30.88 0.29 -10.59 16 18 H 0.09 2.24 5.25 -52.49 -0.28 1.96 16 19 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 20 N -0.86 -25.43 13.67 55.48 0.76 -24.67 16 21 Si 0.94 20.55 29.55 -169.99 -5.02 15.52 16 22 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 23 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 25 C 0.07 1.52 11.14 -17.34 -0.19 1.33 16 26 N -0.50 -10.44 10.39 -12.25 -0.13 -10.56 16 27 H 0.06 0.49 6.54 -51.93 -0.34 0.15 16 28 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 29 H 0.06 0.47 4.81 -51.93 -0.25 0.22 16 30 H 0.06 0.39 8.14 -51.92 -0.42 -0.04 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.45 6.43 -51.93 -0.33 0.11 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.63 7.18 -51.93 -0.37 0.26 16 37 H 0.07 0.61 6.43 -51.93 -0.33 0.27 16 38 H 0.05 0.61 7.93 -51.93 -0.41 0.20 16 39 H 0.06 0.65 6.49 -51.93 -0.34 0.32 16 40 H 0.39 5.37 7.78 -40.82 -0.32 5.05 16 41 H 0.12 1.84 6.70 -52.49 -0.35 1.48 16 42 H 0.14 2.87 5.76 -52.48 -0.30 2.57 16 43 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.15 3.15 8.06 -52.49 -0.42 2.73 16 LS Contribution 340.44 15.07 5.13 5.13 Total: -1.00 -30.59 340.44 -9.05 -39.64 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -6.57 Total: 6.29 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -2.89 Total: -15.21 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: 0.30 Total: -46.28 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: 0.00 Total: -5.10 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.59 -9.05 -39.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162525461.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.850 kcal (2) G-P(sol) polarization free energy of solvation -30.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.78 seconds