Wall clock time and date at job start Tue Mar 31 2020 06:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47077 * 2 1 4 4 C 1.52995 * 109.47398 * 240.00015 * 2 1 3 5 5 C 1.53000 * 109.46960 * 299.99824 * 4 2 1 6 6 C 1.52991 * 109.47211 * 300.00005 * 5 4 2 7 7 C 1.52999 * 109.47517 * 60.00118 * 6 5 4 8 8 C 1.53000 * 109.46783 * 300.00143 * 7 6 5 9 9 H 1.09003 * 109.47044 * 299.99585 * 8 7 6 10 10 C 1.53004 * 109.47173 * 179.97438 * 8 7 6 11 11 N 1.46503 * 109.46750 * 65.00059 * 10 8 7 12 12 C 1.39128 * 119.99330 * 180.02562 * 11 10 8 13 13 C 1.39165 * 119.63385 * 359.97438 * 12 11 10 14 14 C 1.38211 * 119.16743 * 179.97438 * 13 12 11 15 15 C 1.39442 * 118.45433 * 0.02562 * 14 13 12 16 16 O 1.35816 * 120.40832 * 179.97438 * 15 14 13 17 17 C 1.34804 * 116.99522 * 354.52540 * 16 15 14 18 18 H 1.07993 * 120.00691 * 5.05631 * 17 16 15 19 19 C 1.38634 * 119.99525 * 185.05383 * 17 16 15 20 20 N 1.31574 * 120.00444 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99807 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46954 * 90.00273 * 21 19 17 23 23 H 1.48500 * 109.47121 * 210.00041 * 21 19 17 24 24 H 1.48499 * 109.47172 * 330.00074 * 21 19 17 25 25 C 1.38684 * 119.19066 * 0.02562 * 15 14 13 26 26 N 1.31931 * 120.75428 * 359.74260 * 25 15 14 27 27 H 1.08993 * 109.47270 * 300.00316 * 1 2 3 28 28 H 1.09007 * 109.46738 * 60.00224 * 1 2 3 29 29 H 1.08994 * 109.46794 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47110 * 59.99665 * 4 2 1 31 31 H 1.09000 * 109.47413 * 179.97438 * 4 2 1 32 32 H 1.09003 * 109.47044 * 60.00088 * 5 4 2 33 33 H 1.09004 * 109.47345 * 179.97438 * 5 4 2 34 34 H 1.09003 * 109.47185 * 299.99997 * 6 5 4 35 35 H 1.09007 * 109.47021 * 179.97438 * 6 5 4 36 36 H 1.08997 * 109.47471 * 180.02562 * 7 6 5 37 37 H 1.09003 * 109.46992 * 59.99761 * 7 6 5 38 38 H 1.09001 * 109.46793 * 184.99591 * 10 8 7 39 39 H 1.08992 * 109.47162 * 304.99936 * 10 8 7 40 40 H 0.96994 * 120.00343 * 359.97438 * 11 10 8 41 41 H 1.07998 * 120.41629 * 0.02562 * 13 12 11 42 42 H 1.08005 * 120.76998 * 179.97438 * 14 13 12 43 43 H 0.96996 * 120.00531 * 180.02562 * 20 19 17 44 44 H 1.07997 * 119.62004 * 179.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5301 -2.1637 -1.2491 6 6 2.0401 -2.8849 0.0000 7 6 1.5300 -2.1637 1.2493 8 6 2.0400 -0.7212 1.2493 9 1 3.1300 -0.7212 1.2493 10 6 1.5295 0.0002 2.4982 11 7 2.1132 -0.6172 3.6917 12 6 1.7938 -0.1285 4.9545 13 6 0.9194 0.9474 5.0751 14 6 0.6083 1.4247 6.3343 15 6 1.1874 0.8054 7.4413 16 8 0.9098 1.2425 8.6969 17 6 0.1541 2.3535 8.8050 18 1 -0.2691 2.8069 7.9210 19 6 -0.0798 2.9141 10.0512 20 7 0.4362 2.3621 11.1283 21 14 -1.1264 4.4542 10.2010 22 1 -2.5494 4.0700 10.3821 23 1 -0.6749 5.2475 11.3723 24 1 -0.9868 5.2694 8.9676 25 6 2.0511 -0.2617 7.2446 26 7 2.3225 -0.6945 6.0282 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.6767 -0.2074 -2.1392 31 1 3.1300 -0.7208 -1.2494 32 1 0.4401 -2.1637 -1.2492 33 1 1.8931 -2.6775 -2.1394 34 1 3.1301 -2.8849 0.0001 35 1 1.6763 -3.9125 0.0003 36 1 1.8937 -2.6773 2.1393 37 1 0.4400 -2.1638 1.2493 38 1 1.8179 1.0505 2.4545 39 1 0.4432 -0.0767 2.5437 40 1 2.7218 -1.3671 3.6014 41 1 0.4887 1.4031 4.1958 42 1 -0.0669 2.2586 6.4579 43 1 0.2722 2.7541 12.0003 44 1 2.5038 -0.7462 8.0970 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162525461.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:22 Heat of formation + Delta-G solvation = -30.247509 kcal Electronic energy + Delta-G solvation = -22698.749190 eV Core-core repulsion = 19422.000261 eV Total energy + Delta-G solvation = -3276.748929 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.30738 -40.42015 -38.98439 -36.29552 -34.25161 -33.02026 -32.89335 -32.16456 -29.60873 -27.89889 -27.11557 -26.15400 -24.43499 -23.32696 -22.80399 -21.90609 -20.03427 -19.42861 -18.93858 -17.78414 -17.52401 -16.54388 -16.22068 -16.16035 -15.83605 -15.49162 -15.35569 -15.14932 -14.86721 -14.66177 -14.30730 -14.03527 -13.76903 -13.56534 -13.50605 -13.47770 -13.19003 -12.76951 -12.69627 -12.37777 -12.32187 -12.13147 -11.90801 -11.75271 -11.57094 -11.06288 -10.99897 -10.88635 -10.79282 -10.56089 -10.39581 -10.26441 -8.42061 -8.23621 -6.06905 0.37211 0.74343 1.37909 1.47179 1.55137 2.19317 2.36827 2.90530 3.21504 3.54457 3.68981 3.78554 3.83093 3.85367 4.10764 4.23799 4.28576 4.32820 4.36399 4.41981 4.50121 4.51770 4.55645 4.71829 4.78451 4.83187 4.88609 4.93152 4.98021 5.02028 5.11053 5.16708 5.23672 5.28923 5.30687 5.32605 5.41676 5.48662 5.50955 5.52403 5.60175 5.70932 6.01990 6.29516 6.77054 7.02108 7.34675 7.83220 8.81346 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.032391 B = 0.002804 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.240324 B = 9981.592415 C =10639.086304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.080 4.080 3 H 0.074 0.926 4 C -0.111 4.111 5 C -0.120 4.120 6 C -0.117 4.117 7 C -0.115 4.115 8 C -0.082 4.082 9 H 0.075 0.925 10 C 0.136 3.864 11 N -0.725 5.725 12 C 0.327 3.673 13 C -0.181 4.181 14 C -0.150 4.150 15 C 0.023 3.977 16 O -0.228 6.228 17 C -0.410 4.410 18 H 0.101 0.899 19 C -0.024 4.024 20 N -0.922 5.922 21 Si 1.017 2.983 22 H -0.264 1.264 23 H -0.274 1.274 24 H -0.252 1.252 25 C 0.065 3.935 26 N -0.515 5.515 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.401 0.599 41 H 0.152 0.848 42 H 0.138 0.862 43 H 0.271 0.729 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.430 -4.783 -26.617 27.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.099 4.099 3 H 0.092 0.908 4 C -0.149 4.149 5 C -0.158 4.158 6 C -0.155 4.155 7 C -0.153 4.153 8 C -0.101 4.101 9 H 0.094 0.906 10 C 0.012 3.988 11 N -0.363 5.363 12 C 0.091 3.909 13 C -0.205 4.205 14 C -0.177 4.177 15 C -0.030 4.030 16 O -0.134 6.134 17 C -0.487 4.487 18 H 0.118 0.882 19 C -0.221 4.221 20 N -0.561 5.561 21 Si 0.837 3.163 22 H -0.189 1.189 23 H -0.199 1.199 24 H -0.175 1.175 25 C -0.092 4.092 26 N -0.233 5.233 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.237 0.763 41 H 0.170 0.830 42 H 0.156 0.844 43 H 0.080 0.920 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.953 -5.415 -26.409 26.975 hybrid contribution -0.647 0.937 0.818 1.403 sum 0.305 -4.478 -25.591 25.981 Atomic orbital electron populations 1.22018 0.95033 1.02272 1.01908 1.21032 0.96184 0.99157 0.93563 0.90765 1.21536 1.00571 0.95593 0.97154 1.21572 1.01061 0.95596 0.97554 1.21511 1.00723 0.98872 0.94359 1.21601 1.01010 0.94666 0.97977 1.21289 1.00610 0.95223 0.92975 0.90618 1.21528 0.97713 0.96657 0.82916 1.44187 1.53207 1.38424 1.00460 1.18366 0.93890 0.92079 0.86520 1.21376 1.02372 0.99178 0.97593 1.21572 1.02079 1.01978 0.92031 1.20598 0.98353 0.97573 0.86465 1.83958 1.64894 1.42273 1.22313 1.21762 1.28478 1.02903 0.95521 0.88172 1.26541 0.99362 1.02681 0.93561 1.70191 1.44944 1.41906 0.99036 0.84603 0.77365 0.75398 0.78950 1.18912 1.19859 1.17543 1.21539 0.98082 0.95679 0.93901 1.67033 1.27156 1.31409 0.97721 0.92846 0.92081 0.92031 0.91194 0.91965 0.91672 0.91613 0.92048 0.91953 0.92821 0.91770 0.92367 0.92069 0.76300 0.83015 0.84436 0.91964 0.83092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 8.15 71.98 0.59 -1.33 16 2 C -0.08 -0.99 2.72 -10.80 -0.03 -1.02 16 3 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 4 C -0.11 -1.19 5.45 30.59 0.17 -1.02 16 5 C -0.12 -1.30 5.65 30.59 0.17 -1.13 16 6 C -0.12 -1.47 5.92 30.59 0.18 -1.29 16 7 C -0.12 -1.73 4.80 30.59 0.15 -1.58 16 8 C -0.08 -1.22 2.00 -10.79 -0.02 -1.24 16 9 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 10 C 0.14 2.65 3.77 86.38 0.33 2.98 16 11 N -0.72 -19.05 5.46 -344.94 -1.88 -20.94 16 12 C 0.33 11.61 7.65 133.03 1.02 12.63 16 13 C -0.18 -6.42 9.32 22.49 0.21 -6.21 16 14 C -0.15 -6.46 9.25 22.55 0.21 -6.25 16 15 C 0.02 1.16 6.67 22.67 0.15 1.31 16 16 O -0.23 -13.65 9.77 -23.20 -0.23 -13.88 16 17 C -0.41 -23.61 9.50 67.91 0.64 -22.97 16 18 H 0.10 5.22 5.25 -2.91 -0.02 5.20 16 19 C -0.02 -1.37 5.49 84.83 0.47 -0.91 16 20 N -0.92 -56.61 13.67 21.61 0.30 -56.31 16 21 Si 1.02 42.52 29.55 68.60 2.03 44.55 16 22 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 24 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 25 C 0.07 2.98 11.14 84.78 0.94 3.93 16 26 N -0.52 -21.06 10.39 -192.66 -2.00 -23.06 16 27 H 0.05 0.72 6.54 -2.39 -0.02 0.70 16 28 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.06 0.77 4.81 -2.39 -0.01 0.76 16 30 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.72 6.43 -2.39 -0.02 0.70 16 33 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 36 H 0.05 0.93 7.18 -2.39 -0.02 0.91 16 37 H 0.06 1.01 6.43 -2.39 -0.02 1.00 16 38 H 0.06 1.14 7.93 -2.39 -0.02 1.12 16 39 H 0.06 1.21 6.49 -2.39 -0.02 1.19 16 40 H 0.40 9.92 7.78 -92.71 -0.72 9.20 16 41 H 0.15 4.25 6.70 -2.91 -0.02 4.23 16 42 H 0.14 5.78 5.76 -2.91 -0.02 5.77 16 43 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 44 H 0.15 6.66 8.06 -2.91 -0.02 6.63 16 Total: -1.00 -68.59 340.44 3.67 -64.91 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: 0.29 Total: 28.83 kcal Atomic # 6 Polarization: -29.27 SS G_CDS: 5.17 Total: -24.10 kcal Atomic # 7 Polarization: -96.72 SS G_CDS: -3.59 Total: -100.31 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -0.23 Total: -13.88 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -68.59 3.67 -64.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162525461.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.667 kcal (2) G-P(sol) polarization free energy of solvation -68.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds