Wall clock time and date at job start Tue Mar 31 2020 06:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47205 * 2 1 4 4 C 1.53011 * 109.46989 * 239.99984 * 2 1 3 5 5 C 1.53004 * 109.46874 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.46768 * 60.00241 * 5 4 2 7 7 C 1.52999 * 109.47471 * 299.99962 * 6 5 4 8 8 C 1.52997 * 109.47014 * 120.00390 * 2 1 3 9 9 H 1.09003 * 109.47115 * 60.00175 * 8 2 1 10 10 C 1.52999 * 109.47156 * 300.00060 * 8 2 1 11 11 N 1.46496 * 109.47246 * 175.00363 * 10 8 2 12 12 C 1.39123 * 119.99995 * 179.97438 * 11 10 8 13 13 C 1.39166 * 119.63123 * 359.97438 * 12 11 10 14 14 C 1.38211 * 119.17278 * 180.02562 * 13 12 11 15 15 C 1.39456 * 118.44538 * 359.97438 * 14 13 12 16 16 O 1.35816 * 120.39940 * 179.97438 * 15 14 13 17 17 C 1.34809 * 117.00435 * 354.54764 * 16 15 14 18 18 H 1.08007 * 119.99760 * 5.05432 * 17 16 15 19 19 C 1.38629 * 120.00403 * 185.05777 * 17 16 15 20 20 N 1.31577 * 119.99587 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00228 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46949 * 89.99772 * 21 19 17 23 23 H 1.48490 * 109.47027 * 209.99729 * 21 19 17 24 24 H 1.48496 * 109.46954 * 330.00165 * 21 19 17 25 25 C 1.38668 * 119.19514 * 0.02562 * 15 14 13 26 26 N 1.31934 * 120.75681 * 0.02562 * 25 15 14 27 27 H 1.08997 * 109.47330 * 299.99850 * 1 2 3 28 28 H 1.09010 * 109.46944 * 59.99731 * 1 2 3 29 29 H 1.08997 * 109.47409 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46603 * 60.00333 * 4 2 1 31 31 H 1.08995 * 109.47143 * 300.00488 * 4 2 1 32 32 H 1.09003 * 109.47232 * 300.00582 * 5 4 2 33 33 H 1.08997 * 109.46738 * 179.97438 * 5 4 2 34 34 H 1.08999 * 109.47138 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.46965 * 60.00178 * 6 5 4 36 36 H 1.09001 * 109.46696 * 300.00175 * 7 6 5 37 37 H 1.08996 * 109.47132 * 180.02562 * 7 6 5 38 38 H 1.08997 * 109.47331 * 55.00020 * 10 8 2 39 39 H 1.09005 * 109.46732 * 294.99672 * 10 8 2 40 40 H 0.97002 * 120.00252 * 359.97438 * 11 10 8 41 41 H 1.07997 * 120.41335 * 359.97438 * 13 12 11 42 42 H 1.08000 * 120.77495 * 179.97438 * 14 13 12 43 43 H 0.97003 * 119.99949 * 180.02562 * 20 19 17 44 44 H 1.07994 * 119.61812 * 179.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5700 -0.7207 -1.2496 6 6 4.0804 -1.4417 -0.0004 7 6 3.5704 -0.7205 1.2489 8 6 2.0399 -0.7213 1.2492 9 1 1.6766 -1.7490 1.2491 10 6 1.5299 -0.0002 2.4984 11 7 1.9175 -0.7568 3.6915 12 6 1.5633 -0.2934 4.9546 13 6 0.8412 0.8901 5.0758 14 6 0.4948 1.3420 6.3352 15 6 0.8849 0.5884 7.4418 16 8 0.5662 0.9958 8.6976 17 6 -0.0323 2.1978 8.8178 18 1 -0.3112 2.7529 7.9343 19 6 -0.2897 2.7214 10.0753 20 7 0.0496 2.0449 11.1516 21 14 -1.1184 4.3872 10.2418 22 1 -2.5914 4.2048 10.2890 23 1 -0.6608 5.0449 11.4919 24 1 -0.7618 5.2360 9.0766 25 6 1.6031 -0.5813 7.2446 26 7 1.9178 -0.9827 6.0278 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6766 -0.2074 -2.1393 31 1 1.6766 -1.7489 -1.2494 32 1 3.9330 0.3071 -1.2498 33 1 3.9333 -1.2350 -2.1394 34 1 5.1704 -1.4417 -0.0007 35 1 3.7175 -2.4695 -0.0002 36 1 3.9334 0.3073 1.2487 37 1 3.9344 -1.2339 2.1388 38 1 0.4436 0.0781 2.4548 39 1 1.9646 0.9984 2.5444 40 1 2.4211 -1.5809 3.6009 41 1 0.5558 1.4488 4.1968 42 1 -0.0649 2.2572 6.4592 43 1 -0.1308 2.4111 12.0316 44 1 1.9091 -1.1699 8.0968 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162525463.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:38 Heat of formation + Delta-G solvation = -16.495511 kcal Electronic energy + Delta-G solvation = -22615.703620 eV Core-core repulsion = 19339.551023 eV Total energy + Delta-G solvation = -3276.152598 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 5.03 seconds Orbital eigenvalues (eV) -39.80448 -39.22771 -37.21630 -35.01648 -32.96872 -32.27026 -31.29934 -31.13347 -28.15517 -26.71455 -25.43740 -24.96477 -22.87176 -22.04499 -21.23278 -20.83149 -19.97348 -18.10564 -17.36396 -16.14001 -16.02885 -15.14125 -15.05782 -14.67989 -14.55398 -14.44185 -14.20575 -13.92933 -13.66094 -13.38158 -13.18542 -12.79155 -12.57743 -12.30922 -12.20097 -11.95613 -11.89564 -11.75657 -11.65190 -11.44702 -11.22356 -11.11085 -11.02486 -10.66366 -10.48900 -10.25137 -10.17758 -9.62329 -9.26450 -8.93399 -8.71642 -8.51620 -6.61937 -6.40058 -3.97230 2.06597 2.45269 3.14519 3.15412 3.19939 3.64061 4.00106 4.36967 4.43242 4.49345 4.69934 4.83237 4.88929 5.06559 5.13059 5.15184 5.21043 5.23123 5.30937 5.33424 5.43581 5.47406 5.53835 5.59613 5.67370 5.73726 5.77166 5.78502 5.83630 5.89490 5.96791 5.98819 6.00978 6.03624 6.12016 6.15101 6.29960 6.55910 6.76229 7.13903 7.22547 7.29929 7.71932 8.01317 8.18094 8.94308 9.05365 9.75396 10.77999 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.030196 B = 0.002804 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.039269 B = 9982.878514 C =10556.578687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.083 4.083 3 H 0.072 0.928 4 C -0.113 4.113 5 C -0.120 4.120 6 C -0.120 4.120 7 C -0.115 4.115 8 C -0.091 4.091 9 H 0.075 0.925 10 C 0.140 3.860 11 N -0.739 5.739 12 C 0.311 3.689 13 C -0.184 4.184 14 C -0.155 4.155 15 C 0.064 3.936 16 O -0.179 6.179 17 C -0.390 4.390 18 H 0.088 0.912 19 C 0.038 3.962 20 N -0.864 5.864 21 Si 0.939 3.061 22 H -0.274 1.274 23 H -0.278 1.278 24 H -0.269 1.269 25 C 0.068 3.932 26 N -0.503 5.503 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.394 0.606 41 H 0.115 0.885 42 H 0.135 0.865 43 H 0.269 0.731 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.666 -3.481 -23.219 23.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.102 4.102 3 H 0.090 0.910 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.157 4.157 7 C -0.152 4.152 8 C -0.109 4.109 9 H 0.094 0.906 10 C 0.015 3.985 11 N -0.379 5.379 12 C 0.078 3.922 13 C -0.209 4.209 14 C -0.183 4.183 15 C 0.008 3.992 16 O -0.082 6.082 17 C -0.467 4.467 18 H 0.105 0.895 19 C -0.165 4.165 20 N -0.500 5.500 21 Si 0.764 3.236 22 H -0.200 1.200 23 H -0.203 1.203 24 H -0.193 1.193 25 C -0.091 4.091 26 N -0.219 5.219 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.229 0.771 41 H 0.133 0.867 42 H 0.153 0.847 43 H 0.079 0.921 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 4.058 -4.155 -22.926 23.650 hybrid contribution -0.764 1.423 0.117 1.619 sum 3.294 -2.732 -22.809 23.207 Atomic orbital electron populations 1.21937 0.95120 1.02035 1.01951 1.21079 0.95541 0.99635 0.93947 0.90976 1.21582 0.95448 1.00680 0.97310 1.21547 0.95722 1.00762 0.97752 1.21539 1.00139 0.99407 0.94628 1.21596 0.94687 1.01115 0.97819 1.21384 0.95761 1.00141 0.93654 0.90622 1.21288 0.99030 0.94820 0.83401 1.43944 1.64297 1.28459 1.01155 1.17928 0.96995 0.91696 0.85536 1.21081 1.04592 0.97673 0.97543 1.21405 1.03443 1.01839 0.91568 1.20240 0.96810 0.95415 0.86704 1.83992 1.68611 1.35143 1.20474 1.21226 1.37803 0.93760 0.93873 0.89500 1.25236 0.97597 0.99504 0.94207 1.70043 1.44329 1.37721 0.97897 0.85741 0.79135 0.80382 0.78326 1.19965 1.20295 1.19314 1.21449 0.99589 0.95036 0.93002 1.66932 1.23927 1.33269 0.97811 0.92001 0.92761 0.92634 0.92055 0.91994 0.92042 0.92276 0.92136 0.92080 0.91839 0.91555 0.92437 0.92941 0.77093 0.86695 0.84707 0.92111 0.83168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 8.85 37.16 0.33 -0.84 16 2 C -0.08 -0.64 2.25 -90.62 -0.20 -0.84 16 3 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.11 -0.78 5.20 -26.72 -0.14 -0.92 16 5 C -0.12 -0.82 5.92 -26.73 -0.16 -0.98 16 6 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 7 C -0.11 -1.01 5.08 -26.71 -0.14 -1.14 16 8 C -0.09 -0.81 1.76 -90.60 -0.16 -0.96 16 9 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 10 C 0.14 1.59 4.06 -4.04 -0.02 1.58 16 11 N -0.74 -10.71 5.46 -60.38 -0.33 -11.04 16 12 C 0.31 5.83 7.65 -154.90 -1.19 4.64 16 13 C -0.18 -3.49 9.32 -39.25 -0.37 -3.85 16 14 C -0.16 -3.39 9.25 -39.14 -0.36 -3.75 16 15 C 0.06 1.55 6.67 -38.97 -0.26 1.30 16 16 O -0.18 -5.10 9.77 -0.10 0.00 -5.10 16 17 C -0.39 -10.88 9.50 30.88 0.29 -10.59 16 18 H 0.09 2.24 5.25 -52.48 -0.28 1.96 16 19 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 20 N -0.86 -25.43 13.67 55.48 0.76 -24.67 16 21 Si 0.94 20.55 29.55 -169.99 -5.02 15.52 16 22 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 23 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 25 C 0.07 1.52 11.14 -17.35 -0.19 1.33 16 26 N -0.50 -10.44 10.39 -12.25 -0.13 -10.56 16 27 H 0.06 0.51 6.32 -51.93 -0.33 0.18 16 28 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.64 7.19 -51.93 -0.37 0.27 16 38 H 0.06 0.67 5.96 -51.93 -0.31 0.36 16 39 H 0.05 0.62 7.92 -51.93 -0.41 0.21 16 40 H 0.39 5.37 7.78 -40.82 -0.32 5.05 16 41 H 0.12 1.83 6.70 -52.49 -0.35 1.48 16 42 H 0.14 2.87 5.76 -52.49 -0.30 2.57 16 43 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.15 3.15 8.06 -52.49 -0.42 2.73 16 LS Contribution 347.02 15.07 5.23 5.23 Total: -1.00 -30.57 347.02 -9.18 -39.75 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -6.88 Total: 6.00 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -2.81 Total: -15.14 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.30 Total: -46.27 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: 0.00 Total: -5.10 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.57 -9.18 -39.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162525463.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.254 kcal (2) G-P(sol) polarization free energy of solvation -30.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.03 seconds