Wall clock time and date at job start Tue Mar 31 2020 06:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47205 * 2 1 4 4 C 1.53011 * 109.46989 * 239.99984 * 2 1 3 5 5 C 1.53004 * 109.46874 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.46768 * 60.00241 * 5 4 2 7 7 C 1.52999 * 109.47471 * 299.99962 * 6 5 4 8 8 C 1.52997 * 109.47014 * 120.00390 * 2 1 3 9 9 H 1.09003 * 109.47115 * 60.00175 * 8 2 1 10 10 C 1.52999 * 109.47156 * 300.00060 * 8 2 1 11 11 N 1.46496 * 109.47246 * 175.00363 * 10 8 2 12 12 C 1.39123 * 119.99995 * 179.97438 * 11 10 8 13 13 C 1.39166 * 119.63123 * 359.97438 * 12 11 10 14 14 C 1.38211 * 119.17278 * 180.02562 * 13 12 11 15 15 C 1.39456 * 118.44538 * 359.97438 * 14 13 12 16 16 O 1.35816 * 120.39940 * 179.97438 * 15 14 13 17 17 C 1.34809 * 117.00435 * 354.54764 * 16 15 14 18 18 H 1.08007 * 119.99760 * 5.05432 * 17 16 15 19 19 C 1.38629 * 120.00403 * 185.05777 * 17 16 15 20 20 N 1.31577 * 119.99587 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00228 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46949 * 89.99772 * 21 19 17 23 23 H 1.48490 * 109.47027 * 209.99729 * 21 19 17 24 24 H 1.48496 * 109.46954 * 330.00165 * 21 19 17 25 25 C 1.38668 * 119.19514 * 0.02562 * 15 14 13 26 26 N 1.31934 * 120.75681 * 0.02562 * 25 15 14 27 27 H 1.08997 * 109.47330 * 299.99850 * 1 2 3 28 28 H 1.09010 * 109.46944 * 59.99731 * 1 2 3 29 29 H 1.08997 * 109.47409 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46603 * 60.00333 * 4 2 1 31 31 H 1.08995 * 109.47143 * 300.00488 * 4 2 1 32 32 H 1.09003 * 109.47232 * 300.00582 * 5 4 2 33 33 H 1.08997 * 109.46738 * 179.97438 * 5 4 2 34 34 H 1.08999 * 109.47138 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.46965 * 60.00178 * 6 5 4 36 36 H 1.09001 * 109.46696 * 300.00175 * 7 6 5 37 37 H 1.08996 * 109.47132 * 180.02562 * 7 6 5 38 38 H 1.08997 * 109.47331 * 55.00020 * 10 8 2 39 39 H 1.09005 * 109.46732 * 294.99672 * 10 8 2 40 40 H 0.97002 * 120.00252 * 359.97438 * 11 10 8 41 41 H 1.07997 * 120.41335 * 359.97438 * 13 12 11 42 42 H 1.08000 * 120.77495 * 179.97438 * 14 13 12 43 43 H 0.97003 * 119.99949 * 180.02562 * 20 19 17 44 44 H 1.07994 * 119.61812 * 179.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5700 -0.7207 -1.2496 6 6 4.0804 -1.4417 -0.0004 7 6 3.5704 -0.7205 1.2489 8 6 2.0399 -0.7213 1.2492 9 1 1.6766 -1.7490 1.2491 10 6 1.5299 -0.0002 2.4984 11 7 1.9175 -0.7568 3.6915 12 6 1.5633 -0.2934 4.9546 13 6 0.8412 0.8901 5.0758 14 6 0.4948 1.3420 6.3352 15 6 0.8849 0.5884 7.4418 16 8 0.5662 0.9958 8.6976 17 6 -0.0323 2.1978 8.8178 18 1 -0.3112 2.7529 7.9343 19 6 -0.2897 2.7214 10.0753 20 7 0.0496 2.0449 11.1516 21 14 -1.1184 4.3872 10.2418 22 1 -2.5914 4.2048 10.2890 23 1 -0.6608 5.0449 11.4919 24 1 -0.7618 5.2360 9.0766 25 6 1.6031 -0.5813 7.2446 26 7 1.9178 -0.9827 6.0278 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6766 -0.2074 -2.1393 31 1 1.6766 -1.7489 -1.2494 32 1 3.9330 0.3071 -1.2498 33 1 3.9333 -1.2350 -2.1394 34 1 5.1704 -1.4417 -0.0007 35 1 3.7175 -2.4695 -0.0002 36 1 3.9334 0.3073 1.2487 37 1 3.9344 -1.2339 2.1388 38 1 0.4436 0.0781 2.4548 39 1 1.9646 0.9984 2.5444 40 1 2.4211 -1.5809 3.6009 41 1 0.5558 1.4488 4.1968 42 1 -0.0649 2.2572 6.4592 43 1 -0.1308 2.4111 12.0316 44 1 1.9091 -1.1699 8.0968 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162525463.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:36 Heat of formation + Delta-G solvation = -33.732560 kcal Electronic energy + Delta-G solvation = -22616.451075 eV Core-core repulsion = 19339.551023 eV Total energy + Delta-G solvation = -3276.900052 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.29366 -40.19673 -38.95534 -36.25527 -34.25537 -33.60217 -32.89575 -32.20286 -29.58163 -27.66033 -27.03203 -26.12749 -24.44208 -23.23120 -22.25773 -21.72499 -20.66739 -19.95900 -19.05922 -17.77414 -17.50603 -16.21738 -16.03844 -16.01753 -15.80199 -15.59767 -15.25078 -15.11704 -15.04533 -14.78368 -14.36281 -14.09832 -13.91679 -13.54734 -13.47555 -13.19422 -12.99316 -12.79228 -12.67304 -12.62150 -12.34570 -12.13187 -11.90316 -11.71874 -11.57348 -11.29996 -11.02911 -10.87763 -10.82665 -10.55469 -10.38886 -10.26099 -8.42077 -8.23574 -6.06906 0.37201 0.74323 1.37925 1.47199 1.55169 2.19324 2.36623 2.90533 3.21453 3.54439 3.68043 3.77382 3.82379 3.85226 4.10498 4.16318 4.25884 4.31743 4.36533 4.43352 4.49882 4.55603 4.61523 4.66034 4.75568 4.84504 4.90211 4.91354 4.97721 4.99227 5.10250 5.15728 5.23733 5.28929 5.30182 5.34830 5.39727 5.47014 5.50052 5.51035 5.58851 5.66483 6.02004 6.29404 6.76906 7.02107 7.34603 7.83212 8.81329 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.030196 B = 0.002804 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.039269 B = 9982.878514 C =10556.578687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.079 4.079 3 H 0.073 0.927 4 C -0.110 4.110 5 C -0.119 4.119 6 C -0.118 4.118 7 C -0.114 4.114 8 C -0.081 4.081 9 H 0.076 0.924 10 C 0.134 3.866 11 N -0.724 5.724 12 C 0.327 3.673 13 C -0.181 4.181 14 C -0.150 4.150 15 C 0.023 3.977 16 O -0.228 6.228 17 C -0.410 4.410 18 H 0.101 0.899 19 C -0.024 4.024 20 N -0.922 5.922 21 Si 1.017 2.983 22 H -0.264 1.264 23 H -0.274 1.274 24 H -0.252 1.252 25 C 0.065 3.935 26 N -0.515 5.515 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.401 0.599 41 H 0.152 0.848 42 H 0.138 0.862 43 H 0.271 0.729 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.392 -2.645 -26.649 26.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.098 4.098 3 H 0.091 0.909 4 C -0.148 4.148 5 C -0.157 4.157 6 C -0.155 4.155 7 C -0.152 4.152 8 C -0.100 4.100 9 H 0.094 0.906 10 C 0.010 3.990 11 N -0.363 5.363 12 C 0.092 3.908 13 C -0.205 4.205 14 C -0.177 4.177 15 C -0.030 4.030 16 O -0.134 6.134 17 C -0.487 4.487 18 H 0.118 0.882 19 C -0.222 4.222 20 N -0.561 5.561 21 Si 0.837 3.163 22 H -0.189 1.189 23 H -0.199 1.199 24 H -0.175 1.175 25 C -0.092 4.092 26 N -0.233 5.233 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.237 0.763 41 H 0.170 0.830 42 H 0.156 0.844 43 H 0.080 0.920 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.806 -3.354 -26.441 26.923 hybrid contribution -0.563 0.989 0.826 1.406 sum 3.244 -2.365 -25.615 25.927 Atomic orbital electron populations 1.21936 0.94938 1.02037 1.02128 1.21055 0.95618 0.99577 0.93579 0.90893 1.21567 0.95400 1.00683 0.97130 1.21544 0.95698 1.00753 0.97671 1.21521 1.00328 0.99365 0.94313 1.21579 0.94552 1.00934 0.98091 1.21318 0.95766 0.99963 0.92977 0.90601 1.21560 0.99576 0.94947 0.82911 1.44175 1.62975 1.28648 1.00452 1.18362 0.94886 0.91069 0.86524 1.21377 1.03782 0.97776 0.97594 1.21575 1.02605 1.01473 0.91999 1.20597 0.98964 0.96916 0.86506 1.83957 1.70811 1.36022 1.22655 1.21764 1.37961 0.94121 0.94809 0.88174 1.26541 0.98226 1.03889 0.93497 1.70197 1.47020 1.40272 0.98590 0.84599 0.78075 0.74842 0.78786 1.18910 1.19861 1.17547 1.21533 0.99193 0.94574 0.93899 1.67034 1.24794 1.33767 0.97726 0.92607 0.91852 0.92721 0.91154 0.91963 0.92065 0.91401 0.91897 0.91963 0.92195 0.92659 0.91766 0.92532 0.76305 0.83018 0.84432 0.91969 0.83092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.85 71.98 0.64 -1.26 16 2 C -0.08 -0.99 2.25 -10.79 -0.02 -1.01 16 3 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 4 C -0.11 -1.19 5.20 30.60 0.16 -1.03 16 5 C -0.12 -1.30 5.92 30.60 0.18 -1.12 16 6 C -0.12 -1.49 5.92 30.59 0.18 -1.31 16 7 C -0.11 -1.74 5.08 30.61 0.16 -1.58 16 8 C -0.08 -1.22 1.76 -10.78 -0.02 -1.24 16 9 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 10 C 0.13 2.63 4.06 86.38 0.35 2.98 16 11 N -0.72 -19.06 5.46 -344.95 -1.88 -20.95 16 12 C 0.33 11.62 7.65 133.03 1.02 12.64 16 13 C -0.18 -6.42 9.32 22.49 0.21 -6.21 16 14 C -0.15 -6.45 9.25 22.56 0.21 -6.24 16 15 C 0.02 1.16 6.67 22.67 0.15 1.32 16 16 O -0.23 -13.65 9.77 -23.26 -0.23 -13.88 16 17 C -0.41 -23.61 9.50 67.91 0.64 -22.96 16 18 H 0.10 5.22 5.25 -2.91 -0.02 5.20 16 19 C -0.02 -1.38 5.49 84.82 0.47 -0.91 16 20 N -0.92 -56.61 13.67 21.61 0.30 -56.32 16 21 Si 1.02 42.52 29.55 68.60 2.03 44.55 16 22 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 24 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 25 C 0.07 2.98 11.14 84.78 0.94 3.93 16 26 N -0.52 -21.06 10.39 -192.67 -2.00 -23.06 16 27 H 0.05 0.76 6.32 -2.39 -0.02 0.74 16 28 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.05 0.96 7.19 -2.39 -0.02 0.94 16 38 H 0.06 1.25 5.96 -2.39 -0.01 1.24 16 39 H 0.06 1.13 7.92 -2.38 -0.02 1.11 16 40 H 0.40 9.92 7.78 -92.71 -0.72 9.20 16 41 H 0.15 4.25 6.70 -2.91 -0.02 4.23 16 42 H 0.14 5.78 5.76 -2.91 -0.02 5.77 16 43 H 0.27 15.29 8.31 -92.71 -0.77 14.51 16 44 H 0.15 6.66 8.06 -2.91 -0.02 6.63 16 Total: -1.00 -68.55 347.02 3.75 -64.80 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: 0.27 Total: 28.87 kcal Atomic # 6 Polarization: -29.28 SS G_CDS: 5.26 Total: -24.02 kcal Atomic # 7 Polarization: -96.74 SS G_CDS: -3.59 Total: -100.33 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -0.23 Total: -13.88 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -68.55 3.75 -64.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162525463.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.072 kcal (2) G-P(sol) polarization free energy of solvation -68.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds