Wall clock time and date at job start Tue Mar 31 2020 06:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47124 * 2 1 4 4 C 1.53002 * 109.47278 * 119.99459 * 2 1 3 5 5 C 1.53000 * 109.47652 * 180.02562 * 4 2 1 6 6 C 1.53005 * 109.46959 * 300.00775 * 5 4 2 7 7 C 1.52999 * 109.47422 * 59.99697 * 6 5 4 8 8 C 1.52995 * 109.47669 * 239.99976 * 2 1 3 9 9 H 1.09002 * 109.46867 * 300.00181 * 8 2 1 10 10 C 1.53002 * 109.47193 * 59.99430 * 8 2 1 11 11 N 1.46499 * 109.47285 * 185.00100 * 10 8 2 12 12 C 1.39121 * 120.00190 * 180.02562 * 11 10 8 13 13 C 1.39169 * 119.63021 * 359.72727 * 12 11 10 14 14 C 1.38210 * 119.17439 * 179.79544 * 13 12 11 15 15 C 1.39453 * 118.44256 * 0.47382 * 14 13 12 16 16 O 1.35818 * 120.40172 * 179.77656 * 15 14 13 17 17 C 1.34814 * 116.99833 * 354.49398 * 16 15 14 18 18 H 1.08005 * 120.00022 * 5.05929 * 17 16 15 19 19 C 1.38627 * 119.99836 * 185.06185 * 17 16 15 20 20 N 1.31580 * 120.00006 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99910 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47073 * 89.99809 * 21 19 17 23 23 H 1.48503 * 109.47080 * 209.99927 * 21 19 17 24 24 H 1.48504 * 109.46987 * 329.99829 * 21 19 17 25 25 C 1.38669 * 119.19468 * 359.74563 * 15 14 13 26 26 N 1.31924 * 120.75838 * 0.02834 * 25 15 14 27 27 H 1.08999 * 109.46627 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47107 * 300.00377 * 1 2 3 29 29 H 1.09004 * 109.46980 * 60.00411 * 1 2 3 30 30 H 1.09002 * 109.47368 * 300.00734 * 4 2 1 31 31 H 1.09002 * 109.46601 * 60.00221 * 4 2 1 32 32 H 1.09004 * 109.46362 * 59.99934 * 5 4 2 33 33 H 1.08991 * 109.47042 * 180.02562 * 5 4 2 34 34 H 1.09007 * 109.46654 * 299.99290 * 6 5 4 35 35 H 1.08997 * 109.46592 * 179.97438 * 6 5 4 36 36 H 1.08994 * 109.47037 * 180.02562 * 7 6 5 37 37 H 1.08999 * 109.47355 * 59.99514 * 7 6 5 38 38 H 1.08994 * 109.47248 * 305.00983 * 10 8 2 39 39 H 1.09003 * 109.46604 * 65.00557 * 10 8 2 40 40 H 0.97005 * 120.00184 * 0.02562 * 11 10 8 41 41 H 1.08008 * 120.41109 * 0.02562 * 13 12 11 42 42 H 1.08000 * 120.77692 * 180.19942 * 14 13 12 43 43 H 0.97006 * 119.99720 * 179.97438 * 20 19 17 44 44 H 1.08003 * 119.61837 * 179.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5700 -0.7206 1.2497 6 6 4.0806 -1.4415 0.0004 7 6 3.5706 -0.7203 -1.2488 8 6 2.0401 -0.7212 -1.2492 9 1 1.6768 -1.7489 -1.2492 10 6 1.5301 -0.0001 -2.4985 11 7 1.9177 -0.7567 -3.6916 12 6 1.5636 -0.2933 -4.9546 13 6 0.8360 0.8868 -5.0756 14 6 0.4929 1.3407 -6.3351 15 6 0.8835 0.5875 -7.4418 16 8 0.5636 0.9941 -8.6975 17 6 -0.2326 2.0766 -8.8061 18 1 -0.5191 2.6271 -7.9222 19 6 -0.6836 2.4830 -10.0524 20 7 -0.3342 1.8126 -11.1293 21 14 -1.7863 3.9834 -10.2029 22 1 -0.9494 5.1964 -10.3854 23 1 -2.6853 3.8215 -11.3738 24 1 -2.6008 4.1249 -8.9693 25 6 1.6030 -0.5814 -7.2445 26 7 1.9176 -0.9829 -6.0279 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.6766 -0.2073 2.1393 31 1 1.6767 -1.7488 1.2493 32 1 3.9329 0.3072 1.2499 33 1 3.9333 -1.2347 2.1395 34 1 3.7176 -2.4694 0.0003 35 1 5.1706 -1.4407 0.0006 36 1 3.9340 -1.2341 -2.1387 37 1 3.9335 0.3075 -1.2486 38 1 0.4438 0.0782 -2.4548 39 1 1.9647 0.9985 -2.5444 40 1 2.4214 -1.5807 -3.6009 41 1 0.5464 1.4431 -4.1962 42 1 -0.0686 2.2550 -6.4591 43 1 -0.6501 2.0968 -12.0013 44 1 1.9087 -1.1703 -8.0967 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162525465.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:45 Heat of formation + Delta-G solvation = -33.723760 kcal Electronic energy + Delta-G solvation = -22615.604896 eV Core-core repulsion = 19338.705225 eV Total energy + Delta-G solvation = -3276.899671 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.29405 -40.19677 -38.95512 -36.25533 -34.25464 -33.60206 -32.89598 -32.20317 -29.58127 -27.66069 -27.03215 -26.12766 -24.44153 -23.23114 -22.25763 -21.72487 -20.66667 -19.95847 -19.05922 -17.77393 -17.50573 -16.21921 -16.04255 -16.01123 -15.80693 -15.58825 -15.23180 -15.11510 -15.08396 -14.77724 -14.33935 -14.09510 -13.94536 -13.52805 -13.48511 -13.19447 -12.99352 -12.79190 -12.67271 -12.62104 -12.34614 -12.13091 -11.90450 -11.71947 -11.57203 -11.29955 -11.03004 -10.87712 -10.82427 -10.55249 -10.40115 -10.25242 -8.42057 -8.23565 -6.06913 0.37228 0.74324 1.37921 1.47192 1.55152 2.19315 2.36608 2.90545 3.21484 3.54445 3.68053 3.77424 3.82399 3.85204 4.10477 4.16307 4.25905 4.31752 4.36567 4.43356 4.49884 4.55617 4.61540 4.66076 4.75564 4.84544 4.90181 4.91347 4.97716 4.99223 5.10258 5.15770 5.23735 5.28933 5.30199 5.34836 5.39754 5.47023 5.50053 5.51032 5.58859 5.66474 6.02004 6.29412 6.76902 7.02128 7.34623 7.83181 8.81325 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.030660 B = 0.002808 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.022202 B = 9969.027663 C =10610.928890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.079 4.079 3 H 0.073 0.927 4 C -0.110 4.110 5 C -0.119 4.119 6 C -0.118 4.118 7 C -0.114 4.114 8 C -0.082 4.082 9 H 0.075 0.925 10 C 0.134 3.866 11 N -0.724 5.724 12 C 0.327 3.673 13 C -0.181 4.181 14 C -0.150 4.150 15 C 0.023 3.977 16 O -0.228 6.228 17 C -0.410 4.410 18 H 0.101 0.899 19 C -0.024 4.024 20 N -0.922 5.922 21 Si 1.017 2.983 22 H -0.264 1.264 23 H -0.274 1.274 24 H -0.252 1.252 25 C 0.065 3.935 26 N -0.515 5.515 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.401 0.599 41 H 0.152 0.848 42 H 0.138 0.862 43 H 0.271 0.729 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.739 -2.437 26.629 27.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.098 4.098 3 H 0.091 0.909 4 C -0.148 4.148 5 C -0.157 4.157 6 C -0.155 4.155 7 C -0.151 4.151 8 C -0.100 4.100 9 H 0.094 0.906 10 C 0.010 3.990 11 N -0.362 5.362 12 C 0.092 3.908 13 C -0.205 4.205 14 C -0.177 4.177 15 C -0.030 4.030 16 O -0.134 6.134 17 C -0.487 4.487 18 H 0.118 0.882 19 C -0.222 4.222 20 N -0.561 5.561 21 Si 0.837 3.163 22 H -0.189 1.189 23 H -0.199 1.199 24 H -0.175 1.175 25 C -0.092 4.092 26 N -0.233 5.233 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.237 0.763 41 H 0.170 0.830 42 H 0.156 0.844 43 H 0.080 0.920 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.157 -3.143 26.421 26.930 hybrid contribution -0.640 0.942 -0.821 1.405 sum 3.516 -2.201 25.600 25.934 Atomic orbital electron populations 1.21936 0.94956 1.02027 1.02126 1.21054 0.95603 0.99587 0.93581 0.90876 1.21566 0.95414 1.00677 0.97130 1.21542 0.95685 1.00760 0.97674 1.21523 1.00333 0.99361 0.94313 1.21580 0.94530 1.00942 0.98091 1.21320 0.95789 0.99953 0.92975 0.90627 1.21559 0.99562 0.94961 0.82910 1.44176 1.62956 1.28663 1.00455 1.18361 0.94816 0.91144 0.86515 1.21380 1.03672 0.97893 0.97589 1.21574 1.02793 1.01256 0.92028 1.20597 0.99645 0.96280 0.86465 1.83960 1.61945 1.45236 1.22305 1.21765 1.27259 1.04105 0.95524 0.88171 1.26541 0.99387 1.02663 0.93562 1.70199 1.45398 1.41441 0.99040 0.84603 0.77146 0.75607 0.78955 1.18924 1.19854 1.17535 1.21532 0.99987 0.93789 0.93887 1.67028 1.24869 1.33701 0.97724 0.92738 0.91849 0.92613 0.91155 0.91981 0.92053 0.91404 0.91971 0.91883 0.92651 0.92163 0.91803 0.92496 0.76304 0.83017 0.84432 0.91971 0.83092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.85 71.98 0.64 -1.27 16 2 C -0.08 -0.99 2.25 -10.79 -0.02 -1.01 16 3 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 4 C -0.11 -1.19 5.20 30.60 0.16 -1.03 16 5 C -0.12 -1.30 5.92 30.60 0.18 -1.12 16 6 C -0.12 -1.48 5.92 30.60 0.18 -1.30 16 7 C -0.11 -1.73 5.08 30.61 0.16 -1.57 16 8 C -0.08 -1.22 1.76 -10.78 -0.02 -1.24 16 9 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 10 C 0.13 2.63 4.06 86.38 0.35 2.98 16 11 N -0.72 -19.06 5.46 -344.95 -1.88 -20.95 16 12 C 0.33 11.62 7.65 133.04 1.02 12.64 16 13 C -0.18 -6.42 9.32 22.49 0.21 -6.21 16 14 C -0.15 -6.45 9.25 22.56 0.21 -6.24 16 15 C 0.02 1.16 6.67 22.67 0.15 1.31 16 16 O -0.23 -13.65 9.77 -23.33 -0.23 -13.88 16 17 C -0.41 -23.60 9.50 67.91 0.64 -22.96 16 18 H 0.10 5.22 5.25 -2.91 -0.02 5.20 16 19 C -0.02 -1.38 5.49 84.82 0.47 -0.91 16 20 N -0.92 -56.61 13.67 21.61 0.30 -56.32 16 21 Si 1.02 42.52 29.55 68.60 2.03 44.55 16 22 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 23 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 24 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 25 C 0.07 2.98 11.14 84.78 0.94 3.93 16 26 N -0.52 -21.06 10.39 -192.67 -2.00 -23.06 16 27 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.05 0.76 6.32 -2.39 -0.02 0.74 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.05 0.96 7.18 -2.39 -0.02 0.94 16 37 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.06 1.25 5.95 -2.39 -0.01 1.23 16 39 H 0.06 1.13 7.93 -2.39 -0.02 1.11 16 40 H 0.40 9.92 7.78 -92.70 -0.72 9.20 16 41 H 0.15 4.25 6.70 -2.91 -0.02 4.23 16 42 H 0.14 5.78 5.76 -2.91 -0.02 5.77 16 43 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 44 H 0.15 6.66 8.06 -2.91 -0.02 6.63 16 Total: -1.00 -68.55 347.03 3.75 -64.80 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: 0.27 Total: 28.87 kcal Atomic # 6 Polarization: -29.28 SS G_CDS: 5.26 Total: -24.01 kcal Atomic # 7 Polarization: -96.73 SS G_CDS: -3.59 Total: -100.32 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -0.23 Total: -13.88 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -68.55 3.75 -64.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162525465.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.077 kcal (2) G-P(sol) polarization free energy of solvation -68.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds