Wall clock time and date at job start Tue Mar 31 2020 06:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50707 * 109.46972 * 2 1 4 4 O 1.21284 * 119.99857 * 359.97438 * 3 2 1 5 5 N 1.34776 * 119.99906 * 180.02562 * 3 2 1 6 6 C 1.46503 * 119.99805 * 179.97438 * 5 3 2 7 7 C 1.52992 * 109.46780 * 269.99277 * 6 5 3 8 8 N 1.46503 * 109.46780 * 180.02562 * 7 6 5 9 9 C 1.36943 * 119.99874 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00031 * 0.02562 * 9 8 7 11 11 C 1.38816 * 119.99951 * 179.97438 * 9 8 7 12 12 N 1.31620 * 120.00082 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 119.99756 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47638 * 89.99714 * 13 11 9 15 15 H 1.48505 * 109.46879 * 209.99460 * 13 11 9 16 16 H 1.48505 * 109.47521 * 329.99466 * 13 11 9 17 17 C 1.46496 * 119.99885 * 359.97438 * 5 3 2 18 18 C 1.52995 * 109.47070 * 90.00634 * 17 5 3 19 19 C 1.50707 * 109.47301 * 179.97438 * 18 17 5 20 20 C 1.38238 * 119.99792 * 90.00016 * 19 18 17 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00220 * 359.97124 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00179 * 269.97953 * 19 18 17 25 25 H 1.08996 * 109.47116 * 300.00415 * 1 2 3 26 26 H 1.08999 * 109.47122 * 60.00180 * 1 2 3 27 27 H 1.08997 * 109.46901 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47116 * 239.99584 * 2 1 3 29 29 H 1.08999 * 109.47122 * 119.99820 * 2 1 3 30 30 H 1.09003 * 109.47109 * 29.99830 * 6 5 3 31 31 H 1.09008 * 109.46723 * 149.99386 * 6 5 3 32 32 H 1.09003 * 109.47751 * 300.00159 * 7 6 5 33 33 H 1.09004 * 109.46964 * 60.00681 * 7 6 5 34 34 H 0.97001 * 120.00420 * 0.02562 * 8 7 6 35 35 H 0.96998 * 119.99836 * 180.02562 * 12 11 9 36 36 H 1.08995 * 109.47623 * 330.00403 * 17 5 3 37 37 H 1.09004 * 109.47046 * 210.00410 * 17 5 3 38 38 H 1.09005 * 109.47610 * 60.00011 * 18 17 5 39 39 H 1.09000 * 109.47256 * 299.99352 * 18 17 5 40 40 H 1.08005 * 120.00068 * 359.97438 * 20 19 18 41 41 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 42 42 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 43 43 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 44 44 H 1.07999 * 119.99968 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6672 -0.0005 6 6 3.8457 3.0484 -0.0011 7 6 4.0153 3.5287 -1.4437 8 7 4.5042 4.9098 -1.4443 9 6 4.7327 5.5547 -2.6305 10 1 4.5522 5.0454 -3.5656 11 6 5.1954 6.8635 -2.6311 12 7 5.4156 7.4832 -3.7712 13 14 5.5070 7.7446 -1.0137 14 1 6.9095 7.5114 -0.5850 15 1 5.2796 9.2013 -1.1918 16 1 4.5795 7.2217 0.0216 17 6 4.3094 0.5537 -0.0005 18 6 4.6404 0.1657 -1.4430 19 6 5.6202 -0.9793 -1.4430 20 6 5.1599 -2.2828 -1.4425 21 6 6.0586 -3.3331 -1.4431 22 6 7.4176 -3.0800 -1.4448 23 6 7.8779 -1.7766 -1.4400 24 6 6.9792 -0.7262 -1.4441 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.1278 3.6878 0.5128 31 1 4.8061 3.0945 0.5125 32 1 4.7332 2.8893 -1.9576 33 1 3.0549 3.4827 -1.9573 34 1 4.6667 5.3671 -0.6045 35 1 5.7393 8.3976 -3.7716 36 1 3.8693 -0.3007 0.5136 37 1 5.2221 0.8560 0.5130 38 1 5.0807 1.0201 -1.9572 39 1 3.7277 -0.1366 -1.9565 40 1 4.0981 -2.4806 -1.4416 41 1 5.6990 -4.3515 -1.4422 42 1 8.1197 -3.9007 -1.4457 43 1 8.9396 -1.5788 -1.4369 44 1 7.3388 0.2921 -1.4453 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162651390.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:34 Heat of formation + Delta-G solvation = -5.851253 kcal Electronic energy + Delta-G solvation = -22868.050524 eV Core-core repulsion = 19592.359496 eV Total energy + Delta-G solvation = -3275.691028 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.12930 -39.29845 -36.41549 -34.86258 -33.11537 -32.76369 -31.39251 -31.06155 -29.03017 -27.91843 -24.94636 -23.96886 -22.75777 -22.73489 -21.47585 -20.95164 -19.01676 -17.63608 -17.30650 -16.88366 -16.00066 -15.78004 -15.29499 -15.18169 -14.47411 -14.18580 -13.99350 -13.78132 -13.59059 -13.55163 -13.26387 -13.06232 -12.90238 -12.61924 -12.36697 -12.26380 -11.78114 -11.58771 -11.49979 -11.31868 -11.27259 -11.11673 -10.99810 -10.90726 -10.59945 -10.15273 -9.68838 -9.57836 -9.10039 -9.02365 -8.87119 -8.50803 -7.22307 -5.74816 -3.10866 1.15668 1.22222 2.70685 3.00987 3.39396 3.42688 3.47284 3.60637 4.40760 4.60213 4.61284 4.71177 4.80910 4.84537 4.94018 4.94411 4.97836 5.09330 5.26908 5.32665 5.34647 5.35357 5.46698 5.54683 5.59710 5.63101 5.67995 5.73813 5.79284 5.84826 5.89219 5.93278 6.07586 6.13751 6.27802 6.34046 6.43142 6.52312 6.68797 6.82829 6.83275 7.44863 8.00376 8.27575 8.43548 9.22187 9.94419 10.13698 11.43576 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.011641 B = 0.004356 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.652301 B = 6426.296650 C = 8305.701144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 C 0.509 3.491 4 O -0.532 6.532 5 N -0.610 5.610 6 C 0.103 3.897 7 C 0.146 3.854 8 N -0.754 5.754 9 C -0.243 4.243 10 H 0.089 0.911 11 C 0.005 3.995 12 N -0.934 5.934 13 Si 0.885 3.115 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.276 1.276 17 C 0.118 3.882 18 C -0.108 4.108 19 C -0.076 4.076 20 C -0.118 4.118 21 C -0.121 4.121 22 C -0.127 4.127 23 C -0.118 4.118 24 C -0.113 4.113 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.028 0.972 33 H 0.030 0.970 34 H 0.361 0.639 35 H 0.259 0.741 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.089 -25.048 9.491 26.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.183 4.183 3 C 0.297 3.703 4 O -0.408 6.408 5 N -0.343 5.343 6 C -0.020 4.020 7 C 0.018 3.982 8 N -0.400 5.400 9 C -0.372 4.372 10 H 0.107 0.893 11 C -0.191 4.191 12 N -0.582 5.582 13 Si 0.715 3.285 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.202 1.202 17 C -0.005 4.005 18 C -0.146 4.146 19 C -0.077 4.077 20 C -0.136 4.136 21 C -0.139 4.139 22 C -0.145 4.145 23 C -0.136 4.136 24 C -0.131 4.131 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.046 0.954 33 H 0.048 0.952 34 H 0.193 0.807 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.516 -24.489 9.259 26.186 hybrid contribution 0.497 0.672 0.917 1.241 sum -0.018 -23.816 10.176 25.899 Atomic orbital electron populations 1.21538 0.93170 1.01307 1.03490 1.21691 0.98488 0.94192 1.03950 1.20773 0.81834 0.91769 0.75918 1.90733 1.54712 1.46574 1.48768 1.47950 1.05686 1.07015 1.73608 1.21746 0.99756 0.81408 0.99085 1.20967 0.97410 0.86507 0.93313 1.42580 1.81138 1.10822 1.05441 1.19030 1.36935 0.95630 0.85647 0.89280 1.24665 1.01387 0.96668 0.96374 1.69703 1.51948 1.12663 1.23910 0.86537 0.78063 0.79451 0.84463 1.21054 1.21658 1.20244 1.21581 0.93532 0.89280 0.96135 1.21217 0.98465 0.97009 0.97928 1.19819 0.94174 0.94289 0.99391 1.21063 0.99633 0.92142 1.00773 1.21123 0.93423 0.98917 1.00443 1.21145 0.95693 0.96799 1.00874 1.21182 0.99739 0.92773 0.99892 1.21192 0.92696 0.99606 0.99585 0.92064 0.91850 0.92290 0.89043 0.89207 0.89820 0.90662 0.95389 0.95219 0.80696 0.93048 0.90249 0.89967 0.89237 0.90603 0.86145 0.86262 0.86351 0.86088 0.85647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.20 37.16 0.34 -1.00 16 2 C -0.14 -1.36 4.97 -27.88 -0.14 -1.50 16 3 C 0.51 7.21 7.67 -10.98 -0.08 7.13 16 4 O -0.53 -10.00 15.56 5.55 0.09 -9.92 16 5 N -0.61 -8.04 2.47 -173.69 -0.43 -8.46 16 6 C 0.10 1.66 5.56 -4.04 -0.02 1.64 16 7 C 0.15 2.96 6.58 -4.04 -0.03 2.93 16 8 N -0.75 -18.57 5.41 -59.91 -0.32 -18.90 16 9 C -0.24 -7.09 10.47 -15.05 -0.16 -7.24 16 10 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 11 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 12 N -0.93 -29.89 13.97 55.49 0.78 -29.11 16 13 Si 0.88 22.49 27.73 -169.99 -4.71 17.78 16 14 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 15 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 16 H -0.28 -6.66 6.52 56.52 0.37 -6.30 16 17 C 0.12 1.14 5.24 -4.05 -0.02 1.12 16 18 C -0.11 -1.09 5.67 -27.88 -0.16 -1.25 16 19 C -0.08 -0.73 5.13 -104.62 -0.54 -1.27 16 20 C -0.12 -1.00 9.70 -39.58 -0.38 -1.38 16 21 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 22 C -0.13 -1.05 10.05 -39.58 -0.40 -1.45 16 23 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 24 C -0.11 -1.12 9.70 -39.58 -0.38 -1.51 16 25 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 26 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.09 0.72 7.18 -51.93 -0.37 0.35 16 29 H 0.09 0.65 7.40 -51.93 -0.38 0.27 16 30 H 0.08 1.51 7.42 -51.93 -0.39 1.12 16 31 H 0.08 1.08 7.89 -51.92 -0.41 0.67 16 32 H 0.03 0.55 6.26 -51.93 -0.33 0.23 16 33 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.36 8.58 5.53 -40.82 -0.23 8.36 16 35 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 36 H 0.08 0.59 6.44 -51.93 -0.33 0.26 16 37 H 0.08 0.76 7.89 -51.93 -0.41 0.35 16 38 H 0.09 1.10 6.20 -51.93 -0.32 0.78 16 39 H 0.08 0.74 7.16 -51.93 -0.37 0.36 16 40 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 41 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 44 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 359.97 15.07 5.42 5.42 Total: -1.00 -35.11 359.97 -8.98 -44.09 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -6.93 Total: 5.66 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -2.86 Total: -6.55 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: 0.02 Total: -56.47 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.71 Total: 17.78 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.11 -8.98 -44.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162651390.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.235 kcal (2) G-P(sol) polarization free energy of solvation -35.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds