Wall clock time and date at job start Tue Mar 31 2020 06:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50707 * 109.46972 * 2 1 4 4 O 1.21284 * 119.99857 * 359.97438 * 3 2 1 5 5 N 1.34776 * 119.99906 * 180.02562 * 3 2 1 6 6 C 1.46503 * 119.99805 * 179.97438 * 5 3 2 7 7 C 1.52992 * 109.46780 * 269.99277 * 6 5 3 8 8 N 1.46503 * 109.46780 * 180.02562 * 7 6 5 9 9 C 1.36943 * 119.99874 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00031 * 0.02562 * 9 8 7 11 11 C 1.38816 * 119.99951 * 179.97438 * 9 8 7 12 12 N 1.31620 * 120.00082 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 119.99756 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47638 * 89.99714 * 13 11 9 15 15 H 1.48505 * 109.46879 * 209.99460 * 13 11 9 16 16 H 1.48505 * 109.47521 * 329.99466 * 13 11 9 17 17 C 1.46496 * 119.99885 * 359.97438 * 5 3 2 18 18 C 1.52995 * 109.47070 * 90.00634 * 17 5 3 19 19 C 1.50707 * 109.47301 * 179.97438 * 18 17 5 20 20 C 1.38238 * 119.99792 * 90.00016 * 19 18 17 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00220 * 359.97124 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00179 * 269.97953 * 19 18 17 25 25 H 1.08996 * 109.47116 * 300.00415 * 1 2 3 26 26 H 1.08999 * 109.47122 * 60.00180 * 1 2 3 27 27 H 1.08997 * 109.46901 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47116 * 239.99584 * 2 1 3 29 29 H 1.08999 * 109.47122 * 119.99820 * 2 1 3 30 30 H 1.09003 * 109.47109 * 29.99830 * 6 5 3 31 31 H 1.09008 * 109.46723 * 149.99386 * 6 5 3 32 32 H 1.09003 * 109.47751 * 300.00159 * 7 6 5 33 33 H 1.09004 * 109.46964 * 60.00681 * 7 6 5 34 34 H 0.97001 * 120.00420 * 0.02562 * 8 7 6 35 35 H 0.96998 * 119.99836 * 180.02562 * 12 11 9 36 36 H 1.08995 * 109.47623 * 330.00403 * 17 5 3 37 37 H 1.09004 * 109.47046 * 210.00410 * 17 5 3 38 38 H 1.09005 * 109.47610 * 60.00011 * 18 17 5 39 39 H 1.09000 * 109.47256 * 299.99352 * 18 17 5 40 40 H 1.08005 * 120.00068 * 359.97438 * 20 19 18 41 41 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 42 42 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 43 43 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 44 44 H 1.07999 * 119.99968 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6672 -0.0005 6 6 3.8457 3.0484 -0.0011 7 6 4.0153 3.5287 -1.4437 8 7 4.5042 4.9098 -1.4443 9 6 4.7327 5.5547 -2.6305 10 1 4.5522 5.0454 -3.5656 11 6 5.1954 6.8635 -2.6311 12 7 5.4156 7.4832 -3.7712 13 14 5.5070 7.7446 -1.0137 14 1 6.9095 7.5114 -0.5850 15 1 5.2796 9.2013 -1.1918 16 1 4.5795 7.2217 0.0216 17 6 4.3094 0.5537 -0.0005 18 6 4.6404 0.1657 -1.4430 19 6 5.6202 -0.9793 -1.4430 20 6 5.1599 -2.2828 -1.4425 21 6 6.0586 -3.3331 -1.4431 22 6 7.4176 -3.0800 -1.4448 23 6 7.8779 -1.7766 -1.4400 24 6 6.9792 -0.7262 -1.4441 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.1278 3.6878 0.5128 31 1 4.8061 3.0945 0.5125 32 1 4.7332 2.8893 -1.9576 33 1 3.0549 3.4827 -1.9573 34 1 4.6667 5.3671 -0.6045 35 1 5.7393 8.3976 -3.7716 36 1 3.8693 -0.3007 0.5136 37 1 5.2221 0.8560 0.5130 38 1 5.0807 1.0201 -1.9572 39 1 3.7277 -0.1366 -1.9565 40 1 4.0981 -2.4806 -1.4416 41 1 5.6990 -4.3515 -1.4422 42 1 8.1197 -3.9007 -1.4457 43 1 8.9396 -1.5788 -1.4369 44 1 7.3388 0.2921 -1.4453 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162651390.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:33 Heat of formation + Delta-G solvation = -27.592657 kcal Electronic energy + Delta-G solvation = -22868.993302 eV Core-core repulsion = 19592.359496 eV Total energy + Delta-G solvation = -3276.633806 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.17926 -40.01799 -37.70887 -36.52821 -34.31373 -33.60783 -33.30259 -31.68786 -30.35955 -29.01605 -26.25192 -25.05127 -24.10554 -23.38101 -23.04057 -21.79143 -20.20200 -19.61628 -18.31564 -17.57537 -17.21205 -16.77008 -16.41815 -16.03639 -15.89213 -15.80636 -15.41084 -14.89949 -14.74462 -14.57121 -14.32142 -14.03347 -13.95334 -13.81373 -13.44841 -13.17366 -13.11246 -12.94922 -12.68974 -12.55903 -12.50200 -12.19806 -12.13443 -11.95087 -11.87607 -11.79783 -11.60376 -11.00859 -10.82668 -9.94819 -9.74107 -9.42828 -9.37939 -8.07478 -5.43246 0.50114 0.58029 1.35569 1.40139 1.47330 1.62807 1.96015 2.45158 2.95177 3.23379 3.52481 3.67037 3.89133 4.00899 4.09113 4.11794 4.19410 4.22782 4.24215 4.26243 4.38362 4.39269 4.47111 4.58298 4.63583 4.68891 4.73141 4.87781 4.95831 5.01340 5.06931 5.08220 5.13074 5.25138 5.32401 5.36199 5.50331 5.65688 5.68946 5.71187 5.80332 6.15387 6.20415 6.40343 7.00923 7.19521 7.74471 7.95739 9.13979 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.011641 B = 0.004356 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.652301 B = 6426.296650 C = 8305.701144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.134 4.134 3 C 0.499 3.501 4 O -0.589 6.589 5 N -0.605 5.605 6 C 0.114 3.886 7 C 0.151 3.849 8 N -0.755 5.755 9 C -0.242 4.242 10 H 0.051 0.949 11 C -0.061 4.061 12 N -0.982 5.982 13 Si 0.960 3.040 14 H -0.269 1.269 15 H -0.293 1.293 16 H -0.255 1.255 17 C 0.118 3.882 18 C -0.101 4.101 19 C -0.085 4.085 20 C -0.120 4.120 21 C -0.124 4.124 22 C -0.132 4.132 23 C -0.130 4.130 24 C -0.134 4.134 25 H 0.045 0.955 26 H 0.038 0.962 27 H 0.091 0.909 28 H 0.115 0.885 29 H 0.125 0.875 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.036 0.964 33 H 0.000 1.000 34 H 0.368 0.632 35 H 0.260 0.740 36 H 0.114 0.886 37 H 0.089 0.911 38 H 0.058 0.942 39 H 0.080 0.920 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.138 0.862 43 H 0.130 0.870 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.321 -27.911 11.922 30.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.174 4.174 3 C 0.290 3.710 4 O -0.468 6.468 5 N -0.337 5.337 6 C -0.010 4.010 7 C 0.023 3.977 8 N -0.402 5.402 9 C -0.373 4.373 10 H 0.069 0.931 11 C -0.252 4.252 12 N -0.632 5.632 13 Si 0.786 3.214 14 H -0.194 1.194 15 H -0.220 1.220 16 H -0.179 1.179 17 C -0.004 4.004 18 C -0.139 4.139 19 C -0.085 4.085 20 C -0.138 4.138 21 C -0.142 4.142 22 C -0.150 4.150 23 C -0.148 4.148 24 C -0.152 4.152 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.110 0.890 28 H 0.133 0.867 29 H 0.143 0.857 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.054 0.946 33 H 0.018 0.982 34 H 0.201 0.799 35 H 0.069 0.931 36 H 0.132 0.868 37 H 0.108 0.892 38 H 0.077 0.923 39 H 0.099 0.901 40 H 0.161 0.839 41 H 0.161 0.839 42 H 0.156 0.844 43 H 0.148 0.852 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.091 -27.426 11.713 29.822 hybrid contribution 0.369 1.451 0.039 1.498 sum 0.278 -25.975 11.753 28.511 Atomic orbital electron populations 1.21552 0.93592 1.02762 1.01610 1.21780 0.98031 0.90932 1.06627 1.21771 0.81501 0.93354 0.74384 1.90710 1.56118 1.48690 1.51330 1.48033 1.06285 1.06547 1.72846 1.21442 1.00587 0.83170 0.95764 1.21032 0.95642 0.84676 0.96330 1.42539 1.81110 1.12361 1.04159 1.18973 1.36336 0.95951 0.86038 0.93100 1.25560 1.01520 0.97522 1.00627 1.69891 1.53381 1.13122 1.26816 0.85348 0.78946 0.77409 0.79724 1.19412 1.21991 1.17948 1.21837 0.93337 0.89009 0.96231 1.21082 0.98610 0.96246 0.97962 1.19771 0.93681 0.94676 1.00394 1.21329 1.01003 0.91479 0.99986 1.21470 0.93247 1.00057 0.99405 1.21460 0.96546 0.96930 1.00096 1.21380 1.00225 0.93111 1.00069 1.21268 0.93445 0.99582 1.00889 0.93538 0.94277 0.89019 0.86697 0.85691 0.91682 0.88121 0.94584 0.98227 0.79870 0.93101 0.86790 0.89217 0.92286 0.90122 0.83907 0.83878 0.84425 0.85203 0.86668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.20 71.98 0.66 -1.77 16 2 C -0.13 -2.12 4.97 29.85 0.15 -1.98 16 3 C 0.50 13.62 7.67 87.66 0.67 14.29 16 4 O -0.59 -22.59 15.56 -3.04 -0.05 -22.63 16 5 N -0.61 -15.10 2.47 -821.81 -2.03 -17.13 16 6 C 0.11 3.63 5.56 86.38 0.48 4.11 16 7 C 0.15 6.23 6.58 86.38 0.57 6.80 16 8 N -0.76 -37.58 5.41 -343.44 -1.86 -39.44 16 9 C -0.24 -14.59 10.47 84.03 0.88 -13.71 16 10 H 0.05 3.38 8.06 -2.91 -0.02 3.35 16 11 C -0.06 -3.69 5.50 84.86 0.47 -3.23 16 12 N -0.98 -64.62 13.97 21.65 0.30 -64.31 16 13 Si 0.96 46.52 27.73 68.60 1.90 48.43 16 14 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 15 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 16 H -0.25 -11.33 6.52 99.48 0.65 -10.69 16 17 C 0.12 1.95 5.24 86.38 0.45 2.41 16 18 C -0.10 -1.88 5.67 29.85 0.17 -1.71 16 19 C -0.08 -1.47 5.13 -19.86 -0.10 -1.57 16 20 C -0.12 -1.64 9.70 22.27 0.22 -1.43 16 21 C -0.12 -1.58 10.05 22.27 0.22 -1.35 16 22 C -0.13 -1.85 10.05 22.27 0.22 -1.63 16 23 C -0.13 -2.17 10.05 22.27 0.22 -1.95 16 24 C -0.13 -2.57 9.70 22.27 0.22 -2.35 16 25 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 26 H 0.04 0.87 8.10 -2.39 -0.02 0.85 16 27 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.11 1.33 7.18 -2.39 -0.02 1.32 16 29 H 0.13 1.16 7.40 -2.39 -0.02 1.14 16 30 H 0.06 2.34 7.42 -2.39 -0.02 2.32 16 31 H 0.10 2.69 7.89 -2.38 -0.02 2.67 16 32 H 0.04 1.45 6.26 -2.39 -0.01 1.44 16 33 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 34 H 0.37 17.13 5.53 -92.71 -0.51 16.62 16 35 H 0.26 16.17 8.31 -92.71 -0.77 15.40 16 36 H 0.11 1.17 6.44 -2.39 -0.02 1.15 16 37 H 0.09 1.41 7.89 -2.38 -0.02 1.39 16 38 H 0.06 1.46 6.20 -2.38 -0.01 1.45 16 39 H 0.08 1.40 7.16 -2.39 -0.02 1.39 16 40 H 0.14 1.26 8.06 -2.91 -0.02 1.23 16 41 H 0.14 1.10 8.06 -2.91 -0.02 1.08 16 42 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 43 H 0.13 1.80 8.06 -2.91 -0.02 1.78 16 44 H 0.12 2.33 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -80.22 359.97 4.18 -76.04 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: 0.41 Total: 24.12 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 5.50 Total: -5.07 kcal Atomic # 7 Polarization: -117.30 SS G_CDS: -3.59 Total: -120.88 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.05 Total: -22.63 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.90 Total: 48.43 kcal Total: -80.22 4.18 -76.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162651390.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.448 kcal (2) G-P(sol) polarization free energy of solvation -80.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds