Wall clock time and date at job start Tue Mar 31 2020 06:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47638 * 2 1 4 4 O 1.42907 * 109.47154 * 239.99961 * 2 1 3 5 5 C 1.35753 * 116.99757 * 274.80289 * 4 2 1 6 6 C 1.39480 * 120.80667 * 5.06805 * 5 4 2 7 7 C 1.37805 * 119.26055 * 179.79888 * 6 5 4 8 8 N 1.32062 * 120.90954 * 0.49105 * 7 6 5 9 9 C 1.32486 * 121.75933 * 359.74100 * 8 7 6 10 10 N 1.39024 * 119.67706 * 180.02562 * 9 8 7 11 11 C 1.46850 * 110.99609 * 236.06751 * 10 9 8 12 12 C 1.53042 * 109.51858 * 174.15952 * 11 10 9 13 13 C 1.53119 * 109.27775 * 59.18018 * 12 11 10 14 14 C 1.53115 * 109.15973 * 302.34161 * 13 12 11 15 15 H 1.09001 * 109.50609 * 297.71369 * 14 13 12 16 16 C 1.50702 * 109.50429 * 177.63805 * 14 13 12 17 17 H 1.07997 * 120.00276 * 240.00077 * 16 14 13 18 18 C 1.37879 * 119.99832 * 59.99877 * 16 14 13 19 19 N 1.31517 * 119.99958 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 119.99976 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.46869 * 90.00033 * 20 18 16 22 22 H 1.48499 * 109.46989 * 209.99995 * 20 18 16 23 23 H 1.48505 * 109.47155 * 330.00538 * 20 18 16 24 24 C 1.46845 * 110.99940 * 111.85909 * 10 9 8 25 25 C 1.38904 * 120.64781 * 0.02562 * 9 8 7 26 26 H 1.09004 * 109.47071 * 59.99577 * 1 2 3 27 27 H 1.09004 * 109.46763 * 300.00342 * 1 2 3 28 28 H 1.08995 * 109.47473 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47071 * 120.00423 * 2 1 3 30 30 H 1.09004 * 109.46923 * 59.99639 * 3 2 1 31 31 H 1.09003 * 109.47302 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47235 * 300.00323 * 3 2 1 33 33 H 1.08008 * 120.37052 * 0.02562 * 6 5 4 34 34 H 1.07996 * 119.54986 * 180.25694 * 7 6 5 35 35 H 1.08995 * 109.46058 * 294.17225 * 11 10 9 36 36 H 1.09001 * 109.46602 * 54.15693 * 11 10 9 37 37 H 1.08999 * 109.49996 * 179.12134 * 12 11 10 38 38 H 1.08999 * 109.49937 * 299.23401 * 12 11 10 39 39 H 1.08997 * 109.52373 * 62.25264 * 13 12 11 40 40 H 1.09001 * 109.51796 * 182.44348 * 13 12 11 41 41 H 0.97002 * 119.99599 * 179.97438 * 19 18 16 42 42 H 1.09003 * 109.46155 * 305.84916 * 24 10 9 43 43 H 1.08991 * 109.46707 * 65.82211 * 24 10 9 44 44 H 1.07998 * 120.48550 * 179.97438 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.1163 -2.0249 -1.0965 6 6 1.6775 -2.7197 0.0305 7 6 1.8007 -4.0917 0.0663 8 7 2.3354 -4.7514 -0.9451 9 6 2.7689 -4.1299 -2.0319 10 7 3.3241 -4.8675 -3.0713 11 6 4.6773 -4.3934 -3.3887 12 6 5.3108 -5.3163 -4.4322 13 6 4.4433 -5.3234 -5.6939 14 6 3.0268 -5.7744 -5.3273 15 1 3.0579 -6.7929 -4.9401 16 6 2.1512 -5.7287 -6.5529 17 1 1.2750 -5.0974 -6.5675 18 6 2.4686 -6.4929 -7.6558 19 7 3.5352 -7.2621 -7.6380 20 14 1.3836 -6.4358 -9.1754 21 1 1.8646 -5.3667 -10.0871 22 1 1.4408 -7.7449 -9.8739 23 1 -0.0171 -6.1500 -8.7730 24 6 2.4594 -4.8382 -4.2578 25 6 2.6740 -2.7486 -2.1429 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9564 -0.8900 33 1 1.2427 -2.1885 0.8644 34 1 1.4586 -4.6347 0.9349 35 1 4.6232 -3.3796 -3.7854 36 1 5.2851 -4.3973 -2.4838 37 1 6.3092 -4.9552 -4.6790 38 1 5.3779 -6.3275 -4.0308 39 1 4.4080 -4.3197 -6.1174 40 1 4.8677 -6.0130 -6.4237 41 1 3.7583 -7.8000 -8.4138 42 1 1.4562 -5.1652 -3.9842 43 1 2.4157 -3.8225 -4.6505 44 1 3.0286 -2.2446 -3.0299 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166742827.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:24 Heat of formation + Delta-G solvation = -1.323967 kcal Electronic energy + Delta-G solvation = -23355.495546 eV Core-core repulsion = 20080.000836 eV Total energy + Delta-G solvation = -3275.494710 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 3.56 seconds Orbital eigenvalues (eV) -40.82916 -39.18458 -37.51424 -33.85893 -33.71005 -31.94099 -30.90742 -29.95390 -29.19901 -27.63914 -24.96221 -24.35436 -23.26002 -22.54080 -21.48172 -20.67620 -18.66913 -18.39373 -16.82230 -16.39780 -15.79026 -15.72336 -15.43941 -14.81621 -14.62072 -14.26344 -14.07479 -13.72653 -13.36635 -13.26554 -12.91184 -12.72560 -12.60465 -12.55473 -12.39791 -12.21143 -11.78110 -11.64971 -11.27268 -11.00615 -10.93284 -10.74598 -10.68588 -10.12720 -9.89053 -9.62261 -9.44882 -9.16686 -8.85718 -8.82686 -8.67407 -8.29253 -7.83176 -5.95914 -4.02129 1.14251 1.45682 2.88172 3.32804 3.39582 3.42900 3.86876 3.91982 4.37979 4.47259 4.51819 4.66825 4.71357 4.92341 5.09461 5.15926 5.20377 5.28437 5.34501 5.35723 5.39011 5.60414 5.67519 5.71454 5.76239 5.80282 5.87600 6.00118 6.10613 6.14582 6.33799 6.43183 6.50657 6.69001 6.72302 6.93308 7.17567 7.18613 7.39282 7.52998 7.69953 7.77914 8.08886 8.17426 8.40078 8.47290 9.01231 9.62012 11.10165 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.020628 B = 0.003674 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.073043 B = 7619.046998 C = 8091.208365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.075 3.925 3 C -0.149 4.149 4 O -0.307 6.307 5 C 0.179 3.821 6 C -0.281 4.281 7 C 0.145 3.855 8 N -0.492 5.492 9 C 0.361 3.639 10 N -0.500 5.500 11 C 0.072 3.928 12 C -0.117 4.117 13 C -0.112 4.112 14 C 0.056 3.944 15 H 0.038 0.962 16 C -0.515 4.515 17 H 0.054 0.946 18 C 0.064 3.936 19 N -0.887 5.887 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.275 1.275 24 C 0.079 3.921 25 C -0.237 4.237 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.136 0.864 34 H 0.158 0.842 35 H 0.032 0.968 36 H 0.060 0.940 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.032 0.968 40 H 0.094 0.906 41 H 0.260 0.740 42 H 0.062 0.938 43 H 0.028 0.972 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.834 14.170 16.620 21.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.019 3.981 3 C -0.206 4.206 4 O -0.219 6.219 5 C 0.125 3.875 6 C -0.302 4.302 7 C -0.013 4.013 8 N -0.205 5.205 9 C 0.132 3.868 10 N -0.223 5.223 11 C -0.055 4.055 12 C -0.155 4.155 13 C -0.150 4.150 14 C 0.037 3.963 15 H 0.056 0.944 16 C -0.554 4.554 17 H 0.072 0.928 18 C -0.138 4.138 19 N -0.526 5.526 20 Si 0.719 3.281 21 H -0.208 1.208 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.046 4.046 25 C -0.261 4.261 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.154 0.846 34 H 0.175 0.825 35 H 0.051 0.949 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.051 0.949 40 H 0.112 0.888 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.046 0.954 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.580 12.807 16.518 20.961 hybrid contribution -0.857 1.786 -0.893 2.173 sum -2.437 14.593 15.626 21.519 Atomic orbital electron populations 1.22389 0.94842 1.03355 1.03237 1.22491 0.94542 0.93733 0.87326 1.21862 1.02201 0.93400 1.03144 1.86139 1.80577 1.16231 1.38919 1.19170 0.92046 0.82719 0.93565 1.22162 1.10960 0.97057 1.00018 1.22454 0.92540 0.90404 0.95904 1.67471 1.11970 1.40660 1.00372 1.19661 0.90008 0.86225 0.90932 1.58931 1.03333 1.52959 1.07035 1.22111 0.87637 0.97025 0.98726 1.21697 0.97876 0.99176 0.96712 1.21685 0.97331 1.00476 0.95520 1.18692 0.92130 0.94466 0.91005 0.94351 1.21104 1.09962 1.25652 0.98655 0.92784 1.24919 0.95219 0.95131 0.98483 1.69890 1.25385 1.27318 1.29999 0.86613 0.81033 0.77287 0.83162 1.20768 1.21225 1.19962 1.22425 0.94916 0.99570 0.87670 1.22081 1.07758 0.95674 1.00577 0.91290 0.90917 0.91637 0.90706 0.90434 0.91582 0.91332 0.84616 0.82522 0.94946 0.92116 0.92961 0.91673 0.94936 0.88779 0.93014 0.91944 0.95410 0.84402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.39 9.20 37.16 0.34 -1.05 16 2 C 0.08 0.66 2.85 -26.73 -0.08 0.58 16 3 C -0.15 -1.03 9.56 37.16 0.36 -0.67 16 4 O -0.31 -3.93 9.81 -18.97 -0.19 -4.12 16 5 C 0.18 2.54 6.64 -38.87 -0.26 2.28 16 6 C -0.28 -3.41 8.33 -39.28 -0.33 -3.74 16 7 C 0.15 1.96 11.17 -17.61 -0.20 1.76 16 8 N -0.49 -8.73 10.39 -12.51 -0.13 -8.86 16 9 C 0.36 6.65 5.68 -155.01 -0.88 5.77 16 10 N -0.50 -10.14 4.70 -173.27 -0.82 -10.95 16 11 C 0.07 1.32 5.05 -3.83 -0.02 1.30 16 12 C -0.12 -2.29 6.09 -26.65 -0.16 -2.46 16 13 C -0.11 -2.64 5.02 -26.61 -0.13 -2.77 16 14 C 0.06 1.42 2.26 -91.69 -0.21 1.21 16 15 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 16 C -0.51 -14.21 8.57 -34.44 -0.29 -14.50 16 17 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 19 N -0.89 -25.31 11.35 55.43 0.63 -24.68 16 20 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 24 C 0.08 1.77 4.43 -3.83 -0.02 1.75 16 25 C -0.24 -3.92 8.69 -39.08 -0.34 -4.26 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.56 7.00 -51.93 -0.36 0.19 16 29 H 0.08 0.58 6.33 -51.93 -0.33 0.25 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.14 1.21 5.62 -52.48 -0.30 0.92 16 34 H 0.16 1.56 8.06 -52.49 -0.42 1.13 16 35 H 0.03 0.57 7.11 -51.93 -0.37 0.20 16 36 H 0.06 1.03 8.10 -51.93 -0.42 0.61 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.09 2.47 6.15 -51.93 -0.32 2.15 16 41 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.06 1.43 8.10 -51.93 -0.42 1.01 16 43 H 0.03 0.61 7.75 -51.93 -0.40 0.21 16 44 H 0.14 2.28 7.09 -52.49 -0.37 1.91 16 LS Contribution 346.62 15.07 5.22 5.22 Total: -1.00 -30.37 346.62 -9.67 -40.04 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -7.06 Total: 0.13 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -2.31 Total: -13.12 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: -0.32 Total: -44.49 kcal Atomic # 8 Polarization: -3.93 SS G_CDS: -0.19 Total: -4.12 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.37 -9.67 -40.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166742827.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.716 kcal (2) G-P(sol) polarization free energy of solvation -30.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.56 seconds