Wall clock time and date at job start Tue Mar 31 2020 06:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47638 * 2 1 4 4 O 1.42907 * 109.47154 * 239.99961 * 2 1 3 5 5 C 1.35753 * 116.99757 * 274.80289 * 4 2 1 6 6 C 1.39480 * 120.80667 * 5.06805 * 5 4 2 7 7 C 1.37805 * 119.26055 * 179.79888 * 6 5 4 8 8 N 1.32062 * 120.90954 * 0.49105 * 7 6 5 9 9 C 1.32486 * 121.75933 * 359.74100 * 8 7 6 10 10 N 1.39024 * 119.67706 * 180.02562 * 9 8 7 11 11 C 1.46850 * 110.99609 * 236.06751 * 10 9 8 12 12 C 1.53042 * 109.51858 * 174.15952 * 11 10 9 13 13 C 1.53119 * 109.27775 * 59.18018 * 12 11 10 14 14 C 1.53115 * 109.15973 * 302.34161 * 13 12 11 15 15 H 1.09001 * 109.50609 * 297.71369 * 14 13 12 16 16 C 1.50702 * 109.50429 * 177.63805 * 14 13 12 17 17 H 1.07997 * 120.00276 * 240.00077 * 16 14 13 18 18 C 1.37879 * 119.99832 * 59.99877 * 16 14 13 19 19 N 1.31517 * 119.99958 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 119.99976 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.46869 * 90.00033 * 20 18 16 22 22 H 1.48499 * 109.46989 * 209.99995 * 20 18 16 23 23 H 1.48505 * 109.47155 * 330.00538 * 20 18 16 24 24 C 1.46845 * 110.99940 * 111.85909 * 10 9 8 25 25 C 1.38904 * 120.64781 * 0.02562 * 9 8 7 26 26 H 1.09004 * 109.47071 * 59.99577 * 1 2 3 27 27 H 1.09004 * 109.46763 * 300.00342 * 1 2 3 28 28 H 1.08995 * 109.47473 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47071 * 120.00423 * 2 1 3 30 30 H 1.09004 * 109.46923 * 59.99639 * 3 2 1 31 31 H 1.09003 * 109.47302 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47235 * 300.00323 * 3 2 1 33 33 H 1.08008 * 120.37052 * 0.02562 * 6 5 4 34 34 H 1.07996 * 119.54986 * 180.25694 * 7 6 5 35 35 H 1.08995 * 109.46058 * 294.17225 * 11 10 9 36 36 H 1.09001 * 109.46602 * 54.15693 * 11 10 9 37 37 H 1.08999 * 109.49996 * 179.12134 * 12 11 10 38 38 H 1.08999 * 109.49937 * 299.23401 * 12 11 10 39 39 H 1.08997 * 109.52373 * 62.25264 * 13 12 11 40 40 H 1.09001 * 109.51796 * 182.44348 * 13 12 11 41 41 H 0.97002 * 119.99599 * 179.97438 * 19 18 16 42 42 H 1.09003 * 109.46155 * 305.84916 * 24 10 9 43 43 H 1.08991 * 109.46707 * 65.82211 * 24 10 9 44 44 H 1.07998 * 120.48550 * 179.97438 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.1163 -2.0249 -1.0965 6 6 1.6775 -2.7197 0.0305 7 6 1.8007 -4.0917 0.0663 8 7 2.3354 -4.7514 -0.9451 9 6 2.7689 -4.1299 -2.0319 10 7 3.3241 -4.8675 -3.0713 11 6 4.6773 -4.3934 -3.3887 12 6 5.3108 -5.3163 -4.4322 13 6 4.4433 -5.3234 -5.6939 14 6 3.0268 -5.7744 -5.3273 15 1 3.0579 -6.7929 -4.9401 16 6 2.1512 -5.7287 -6.5529 17 1 1.2750 -5.0974 -6.5675 18 6 2.4686 -6.4929 -7.6558 19 7 3.5352 -7.2621 -7.6380 20 14 1.3836 -6.4358 -9.1754 21 1 1.8646 -5.3667 -10.0871 22 1 1.4408 -7.7449 -9.8739 23 1 -0.0171 -6.1500 -8.7730 24 6 2.4594 -4.8382 -4.2578 25 6 2.6740 -2.7486 -2.1429 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9564 -0.8900 33 1 1.2427 -2.1885 0.8644 34 1 1.4586 -4.6347 0.9349 35 1 4.6232 -3.3796 -3.7854 36 1 5.2851 -4.3973 -2.4838 37 1 6.3092 -4.9552 -4.6790 38 1 5.3779 -6.3275 -4.0308 39 1 4.4080 -4.3197 -6.1174 40 1 4.8677 -6.0130 -6.4237 41 1 3.7583 -7.8000 -8.4138 42 1 1.4562 -5.1652 -3.9842 43 1 2.4157 -3.8225 -4.6505 44 1 3.0286 -2.2446 -3.0299 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166742827.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:23 Heat of formation + Delta-G solvation = -19.258921 kcal Electronic energy + Delta-G solvation = -23356.273264 eV Core-core repulsion = 20080.000836 eV Total energy + Delta-G solvation = -3276.272428 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.96889 -40.39157 -38.89610 -35.67729 -34.46757 -33.69676 -31.98606 -31.78947 -30.53247 -28.20517 -26.98218 -25.76006 -24.39200 -23.71545 -23.22281 -21.75568 -20.38367 -19.51993 -18.41601 -17.76690 -17.15795 -16.81217 -16.53575 -16.52864 -15.90166 -15.68891 -15.28732 -14.84805 -14.73839 -14.54426 -14.38875 -14.21425 -13.88470 -13.57418 -13.37538 -13.36110 -13.02851 -12.85029 -12.69422 -12.58999 -12.51886 -12.01195 -11.90552 -11.81585 -11.73123 -11.46420 -11.04166 -10.77454 -10.70951 -10.40202 -10.03808 -9.87307 -9.35268 -8.08424 -6.22944 -0.01872 0.33296 1.41890 1.42527 1.53012 1.99567 2.40478 2.59534 2.72200 3.18529 3.60836 3.80434 3.86594 3.90096 3.98051 4.04682 4.10230 4.15338 4.20506 4.32347 4.41698 4.51324 4.59901 4.67059 4.72038 4.77317 4.80451 4.83100 4.86919 4.89152 4.97900 5.05056 5.09998 5.21912 5.25039 5.33929 5.36693 5.51086 5.62924 5.85812 6.03219 6.14807 6.21281 6.29548 6.39044 6.87344 7.18653 7.44709 8.96529 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.020628 B = 0.003674 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.073043 B = 7619.046998 C = 8091.208365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.064 3.936 3 C -0.147 4.147 4 O -0.322 6.322 5 C 0.180 3.820 6 C -0.260 4.260 7 C 0.143 3.857 8 N -0.526 5.526 9 C 0.335 3.665 10 N -0.514 5.514 11 C 0.077 3.923 12 C -0.108 4.108 13 C -0.103 4.103 14 C 0.056 3.944 15 H -0.002 1.002 16 C -0.539 4.539 17 H 0.050 0.950 18 C 0.017 3.983 19 N -0.913 5.913 20 Si 0.956 3.044 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.271 1.271 24 C 0.098 3.902 25 C -0.250 4.250 26 H 0.058 0.942 27 H 0.100 0.900 28 H 0.057 0.943 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.175 0.825 34 H 0.195 0.805 35 H 0.041 0.959 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.052 0.948 39 H 0.029 0.971 40 H 0.064 0.936 41 H 0.262 0.738 42 H 0.046 0.954 43 H 0.027 0.973 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.579 16.175 18.711 24.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.009 3.991 3 C -0.204 4.204 4 O -0.234 6.234 5 C 0.126 3.874 6 C -0.281 4.281 7 C -0.014 4.014 8 N -0.241 5.241 9 C 0.107 3.893 10 N -0.236 5.236 11 C -0.050 4.050 12 C -0.146 4.146 13 C -0.142 4.142 14 C 0.037 3.963 15 H 0.016 0.984 16 C -0.577 4.577 17 H 0.068 0.932 18 C -0.183 4.183 19 N -0.552 5.552 20 Si 0.781 3.219 21 H -0.199 1.199 22 H -0.207 1.207 23 H -0.195 1.195 24 C -0.028 4.028 25 C -0.274 4.274 26 H 0.077 0.923 27 H 0.119 0.881 28 H 0.076 0.924 29 H 0.109 0.891 30 H 0.124 0.876 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.193 0.807 34 H 0.212 0.788 35 H 0.059 0.941 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.071 0.929 39 H 0.048 0.952 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.045 0.955 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.325 14.835 18.631 23.929 hybrid contribution -0.677 1.246 -1.405 1.997 sum -3.002 16.081 17.225 23.756 Atomic orbital electron populations 1.22395 0.93911 1.03132 1.04173 1.22910 0.95349 0.94408 0.86466 1.21908 1.01967 0.92357 1.04185 1.86146 1.80578 1.15438 1.41267 1.19210 0.91280 0.83573 0.93370 1.22514 1.08903 0.96585 1.00061 1.23108 0.91262 0.91343 0.95703 1.67411 1.13296 1.42098 1.01263 1.19494 0.92036 0.86774 0.90980 1.58749 1.03713 1.54573 1.06609 1.22092 0.87058 0.96772 0.99053 1.21600 0.98677 0.99208 0.95123 1.21476 0.96813 0.99140 0.96742 1.18583 0.93373 0.93054 0.91304 0.98391 1.21440 1.10365 1.25990 0.99917 0.93171 1.25702 0.96492 0.94693 1.01364 1.70029 1.26628 1.27729 1.30803 0.85593 0.79299 0.77502 0.79467 1.19889 1.20740 1.19530 1.21995 0.94365 0.98358 0.88041 1.21927 1.08995 0.95135 1.01346 0.92317 0.88098 0.92391 0.89052 0.87640 0.92020 0.92044 0.80734 0.78832 0.94130 0.90127 0.90049 0.92910 0.95207 0.91700 0.92908 0.93559 0.95466 0.85355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.18 9.20 71.98 0.66 -1.52 16 2 C 0.06 0.92 2.85 30.59 0.09 1.00 16 3 C -0.15 -1.62 9.56 71.98 0.69 -0.93 16 4 O -0.32 -7.66 9.81 -90.78 -0.89 -8.55 16 5 C 0.18 4.80 6.64 22.73 0.15 4.95 16 6 C -0.26 -5.49 8.33 22.47 0.19 -5.31 16 7 C 0.14 3.50 11.17 84.56 0.94 4.44 16 8 N -0.53 -18.35 10.39 -193.48 -2.01 -20.36 16 9 C 0.34 12.41 5.68 132.97 0.76 13.17 16 10 N -0.51 -21.34 4.70 -702.12 -3.30 -24.64 16 11 C 0.08 2.82 5.05 86.33 0.44 3.25 16 12 C -0.11 -4.30 6.09 30.65 0.19 -4.11 16 13 C -0.10 -5.06 5.02 30.67 0.15 -4.91 16 14 C 0.06 2.97 2.26 -11.49 -0.03 2.95 16 15 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 16 C -0.54 -30.82 8.57 25.60 0.22 -30.60 16 17 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 18 C 0.02 0.94 5.30 84.65 0.45 1.39 16 19 N -0.91 -53.69 11.35 21.45 0.24 -53.44 16 20 Si 0.96 44.48 29.54 68.60 2.03 46.51 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 23 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 24 C 0.10 4.58 4.43 86.33 0.38 4.97 16 25 C -0.25 -8.22 8.69 22.59 0.20 -8.02 16 26 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.80 7.00 -2.39 -0.02 0.78 16 29 H 0.09 1.02 6.33 -2.38 -0.02 1.01 16 30 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.18 2.25 5.62 -2.91 -0.02 2.24 16 34 H 0.19 3.11 8.06 -2.91 -0.02 3.09 16 35 H 0.04 1.42 7.11 -2.39 -0.02 1.41 16 36 H 0.08 2.65 8.10 -2.39 -0.02 2.63 16 37 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 38 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.06 3.55 6.15 -2.39 -0.01 3.53 16 41 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 42 H 0.05 2.24 8.10 -2.39 -0.02 2.22 16 43 H 0.03 1.24 7.75 -2.39 -0.02 1.22 16 44 H 0.13 4.33 7.09 -2.91 -0.02 4.31 16 Total: -1.00 -68.88 346.62 2.51 -66.37 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 0.97 Total: 13.39 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: 5.47 Total: -19.28 kcal Atomic # 7 Polarization: -93.37 SS G_CDS: -5.07 Total: -98.44 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -0.89 Total: -8.55 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -68.88 2.51 -66.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166742827.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.114 kcal (2) G-P(sol) polarization free energy of solvation -68.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds