Wall clock time and date at job start Tue Mar 31 2020 06:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47561 * 2 1 4 4 O 1.42902 * 109.47335 * 120.00440 * 2 1 3 5 5 C 1.35753 * 117.00162 * 155.15720 * 4 2 1 6 6 C 1.39487 * 120.80376 * 5.49029 * 5 4 2 7 7 C 1.37803 * 119.25680 * 179.97438 * 6 5 4 8 8 N 1.32053 * 120.91350 * 0.25654 * 7 6 5 9 9 C 1.32486 * 121.75792 * 359.47829 * 8 7 6 10 10 N 1.39023 * 119.67595 * 180.26604 * 9 8 7 11 11 C 1.46842 * 111.00184 * 236.29763 * 10 9 8 12 12 C 1.53048 * 109.52403 * 185.84086 * 11 10 9 13 13 C 1.53121 * 109.27370 * 300.82004 * 12 11 10 14 14 C 1.53114 * 109.16174 * 57.65488 * 13 12 11 15 15 H 1.09004 * 109.50706 * 62.28355 * 14 13 12 16 16 C 1.50703 * 109.50102 * 182.40071 * 14 13 12 17 17 H 1.08000 * 119.99586 * 120.00075 * 16 14 13 18 18 C 1.37873 * 120.00427 * 299.99916 * 16 14 13 19 19 N 1.31515 * 119.99696 * 0.02562 * 18 16 14 20 20 Si 1.86796 * 120.00304 * 180.02562 * 18 16 14 21 21 H 1.48491 * 109.47322 * 90.00057 * 20 18 16 22 22 H 1.48510 * 109.47070 * 210.00288 * 20 18 16 23 23 H 1.48503 * 109.46908 * 329.99651 * 20 18 16 24 24 C 1.46851 * 110.99938 * 0.50951 * 10 9 8 25 25 C 1.38904 * 120.65050 * 0.52158 * 9 8 7 26 26 H 1.09001 * 109.46507 * 299.99700 * 1 2 3 27 27 H 1.08994 * 109.46927 * 59.99466 * 1 2 3 28 28 H 1.08995 * 109.47299 * 180.02562 * 1 2 3 29 29 H 1.09011 * 109.47038 * 240.00174 * 2 1 3 30 30 H 1.09005 * 109.46258 * 60.00458 * 3 2 1 31 31 H 1.08999 * 109.46993 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46869 * 300.00481 * 3 2 1 33 33 H 1.08001 * 120.37335 * 359.95775 * 6 5 4 34 34 H 1.08002 * 119.54054 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.46258 * 305.85340 * 11 10 9 36 36 H 1.08997 * 109.46618 * 65.83253 * 11 10 9 37 37 H 1.08993 * 109.50019 * 60.75813 * 12 11 10 38 38 H 1.08994 * 109.49885 * 180.87863 * 12 11 10 39 39 H 1.09006 * 109.51872 * 177.55875 * 13 12 11 40 40 H 1.08999 * 109.52285 * 297.68551 * 13 12 11 41 41 H 0.97006 * 120.00076 * 179.97438 * 19 18 16 42 42 H 1.08998 * 109.45977 * 294.17640 * 24 10 9 43 43 H 1.08998 * 109.46472 * 54.14039 * 24 10 9 44 44 H 1.07996 * 120.48833 * 179.77206 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2467 -1.2214 1.0989 6 6 4.0537 -1.0256 -0.0218 7 6 5.3077 -1.5959 -0.0566 8 7 5.7493 -2.3258 0.9514 9 6 5.0172 -2.5323 2.0361 10 7 5.5272 -3.3036 3.0742 11 6 4.6340 -4.4275 3.3828 12 6 5.1503 -5.1666 4.6195 13 6 6.5682 -5.6769 4.3479 14 6 7.4671 -4.4927 3.9817 15 1 7.5186 -3.8011 4.8227 16 6 8.8506 -4.9933 3.6554 17 1 9.2733 -4.8133 2.6780 18 6 9.5767 -5.6809 4.6046 19 7 9.0617 -5.9004 5.7946 20 14 11.2918 -6.3006 4.2004 21 1 12.2901 -5.2588 4.5510 22 1 11.5689 -7.5341 4.9797 23 1 11.3799 -6.6021 2.7489 24 6 6.8836 -3.7731 2.7636 25 6 3.7430 -1.9900 2.1442 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8901 30 1 1.6768 1.9562 0.8901 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 3.6997 -0.4338 -0.8530 34 1 5.9363 -1.4476 -0.9223 35 1 3.6300 -4.0504 3.5780 36 1 4.6062 -5.1127 2.5356 37 1 5.1654 -4.4857 5.4704 38 1 4.4958 -6.0100 4.8390 39 1 6.9565 -6.1664 5.2412 40 1 6.5474 -6.3885 3.5225 41 1 9.5723 -6.3845 6.4624 42 1 6.8452 -4.4613 1.9192 43 1 7.5136 -2.9209 2.5090 44 1 3.1470 -2.1630 3.0281 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166742828.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:30 Heat of formation + Delta-G solvation = -3.854489 kcal Electronic energy + Delta-G solvation = -23246.500332 eV Core-core repulsion = 19970.895890 eV Total energy + Delta-G solvation = -3275.604442 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.76706 -39.22555 -37.41416 -33.87151 -33.66722 -31.95027 -31.01433 -29.85773 -29.20046 -27.60875 -25.08655 -24.26924 -23.29634 -22.46946 -21.27965 -20.60374 -18.79438 -18.31964 -16.76621 -16.35307 -15.77444 -15.64364 -15.39326 -14.79439 -14.47949 -14.39947 -13.78302 -13.69054 -13.62921 -13.19467 -12.86572 -12.83346 -12.59752 -12.48810 -12.33047 -12.26569 -11.76711 -11.65940 -11.22492 -10.97361 -10.91863 -10.75581 -10.65039 -10.14478 -9.86695 -9.72892 -9.36214 -9.24924 -9.08343 -8.76245 -8.66208 -8.27237 -7.67380 -5.95107 -4.00513 1.33142 1.55137 2.90027 3.34204 3.40530 3.44336 3.87043 4.20243 4.42035 4.48476 4.55287 4.71258 4.78616 4.91663 5.08181 5.17605 5.31292 5.35269 5.36584 5.37561 5.42006 5.58516 5.67731 5.71829 5.76217 5.83243 5.92774 5.97673 6.15859 6.22838 6.37414 6.47504 6.57023 6.62912 6.77398 6.99621 7.11134 7.24524 7.33387 7.46645 7.77107 7.79241 8.07773 8.15783 8.36022 8.51260 9.03151 9.63622 11.11278 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.034048 B = 0.003290 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.172268 B = 8509.885057 C = 9103.476357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.076 3.924 3 C -0.181 4.181 4 O -0.307 6.307 5 C 0.188 3.812 6 C -0.305 4.305 7 C 0.163 3.837 8 N -0.538 5.538 9 C 0.360 3.640 10 N -0.475 5.475 11 C 0.068 3.932 12 C -0.119 4.119 13 C -0.114 4.114 14 C 0.050 3.950 15 H 0.034 0.966 16 C -0.511 4.511 17 H 0.056 0.944 18 C 0.062 3.938 19 N -0.890 5.890 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.080 3.920 25 C -0.233 4.233 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.133 0.867 34 H 0.153 0.847 35 H 0.069 0.931 36 H 0.039 0.961 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.094 0.906 40 H 0.033 0.967 41 H 0.259 0.741 42 H 0.038 0.962 43 H 0.072 0.928 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.319 10.275 -11.336 22.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.020 3.980 3 C -0.238 4.238 4 O -0.219 6.219 5 C 0.135 3.865 6 C -0.328 4.328 7 C 0.004 3.996 8 N -0.255 5.255 9 C 0.128 3.872 10 N -0.190 5.190 11 C -0.057 4.057 12 C -0.157 4.157 13 C -0.152 4.152 14 C 0.031 3.969 15 H 0.052 0.948 16 C -0.549 4.549 17 H 0.074 0.926 18 C -0.139 4.139 19 N -0.529 5.529 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.045 4.045 25 C -0.256 4.256 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.151 0.849 34 H 0.171 0.829 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.113 0.887 40 H 0.052 0.948 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.091 0.909 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.571 10.047 -10.539 21.318 hybrid contribution 0.165 -0.163 -0.945 0.974 sum -15.406 9.884 -11.484 21.608 Atomic orbital electron populations 1.21856 0.92411 1.03241 1.03065 1.22466 0.95374 0.92731 0.87419 1.22390 1.02477 0.95835 1.03099 1.86095 1.29076 1.67806 1.38926 1.18990 0.83944 0.90076 0.93474 1.21970 0.98363 1.11758 1.00684 1.22321 0.92222 0.89490 0.95572 1.67838 1.37387 1.19646 1.00671 1.19856 0.87874 0.92485 0.86994 1.59061 1.06186 1.21646 1.32152 1.22221 0.94576 0.89967 0.98939 1.21742 0.99379 0.98492 0.96111 1.21711 0.91230 0.99562 1.02686 1.18770 0.93218 0.92729 0.92173 0.94810 1.21111 0.99528 1.35257 0.99052 0.92591 1.24929 0.97926 0.96037 0.94985 1.69887 1.37173 1.41534 1.04301 0.86604 0.84831 0.78258 0.78359 1.20720 1.21316 1.19947 1.22289 0.84026 0.98908 0.99312 1.20752 0.97835 1.06070 1.00987 0.91397 0.90490 0.91596 0.90695 0.91398 0.91565 0.91006 0.84935 0.82929 0.91303 0.94273 0.91717 0.92671 0.88741 0.94809 0.93073 0.94392 0.90930 0.84314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.56 37.16 0.36 -0.64 16 2 C 0.08 0.66 2.85 -26.73 -0.08 0.58 16 3 C -0.18 -1.36 9.19 37.16 0.34 -1.02 16 4 O -0.31 -3.81 9.81 -18.97 -0.19 -4.00 16 5 C 0.19 2.64 6.64 -38.87 -0.26 2.38 16 6 C -0.31 -3.82 8.31 -39.28 -0.33 -4.15 16 7 C 0.16 2.30 11.17 -17.62 -0.20 2.10 16 8 N -0.54 -9.72 8.68 -12.51 -0.11 -9.83 16 9 C 0.36 6.59 6.40 -155.01 -0.99 5.60 16 10 N -0.48 -9.48 4.68 -173.27 -0.81 -10.29 16 11 C 0.07 1.22 5.25 -3.83 -0.02 1.20 16 12 C -0.12 -2.29 6.09 -26.64 -0.16 -2.45 16 13 C -0.11 -2.68 5.02 -26.61 -0.13 -2.81 16 14 C 0.05 1.27 2.26 -91.69 -0.21 1.06 16 15 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 16 C -0.51 -14.20 8.56 -34.44 -0.29 -14.49 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 19 N -0.89 -25.45 11.35 55.43 0.63 -24.82 16 20 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 C 0.08 1.81 3.87 -3.83 -0.01 1.80 16 25 C -0.23 -3.72 9.14 -39.09 -0.36 -4.08 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.60 6.37 -51.92 -0.33 0.27 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.56 6.93 -51.93 -0.36 0.20 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.13 1.26 5.59 -52.49 -0.29 0.97 16 34 H 0.15 1.68 8.06 -52.49 -0.42 1.26 16 35 H 0.07 1.06 6.68 -51.93 -0.35 0.71 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.09 2.47 6.15 -51.93 -0.32 2.15 16 40 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.04 0.88 8.11 -51.93 -0.42 0.46 16 43 H 0.07 1.71 7.71 -51.93 -0.40 1.31 16 44 H 0.14 2.10 7.15 -52.49 -0.38 1.72 16 LS Contribution 345.23 15.07 5.20 5.20 Total: -1.00 -30.16 345.23 -9.77 -39.93 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -7.04 Total: 0.59 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -2.44 Total: -13.26 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: -0.29 Total: -44.93 kcal Atomic # 8 Polarization: -3.81 SS G_CDS: -0.19 Total: -4.00 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.16 -9.77 -39.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166742828.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.079 kcal (2) G-P(sol) polarization free energy of solvation -30.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds