Wall clock time and date at job start Tue Mar 31 2020 06:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47561 * 2 1 4 4 O 1.42902 * 109.47335 * 120.00440 * 2 1 3 5 5 C 1.35753 * 117.00162 * 155.15720 * 4 2 1 6 6 C 1.39487 * 120.80376 * 5.49029 * 5 4 2 7 7 C 1.37803 * 119.25680 * 179.97438 * 6 5 4 8 8 N 1.32053 * 120.91350 * 0.25654 * 7 6 5 9 9 C 1.32486 * 121.75792 * 359.47829 * 8 7 6 10 10 N 1.39023 * 119.67595 * 180.26604 * 9 8 7 11 11 C 1.46842 * 111.00184 * 236.29763 * 10 9 8 12 12 C 1.53048 * 109.52403 * 185.84086 * 11 10 9 13 13 C 1.53121 * 109.27370 * 300.82004 * 12 11 10 14 14 C 1.53114 * 109.16174 * 57.65488 * 13 12 11 15 15 H 1.09004 * 109.50706 * 62.28355 * 14 13 12 16 16 C 1.50703 * 109.50102 * 182.40071 * 14 13 12 17 17 H 1.08000 * 119.99586 * 120.00075 * 16 14 13 18 18 C 1.37873 * 120.00427 * 299.99916 * 16 14 13 19 19 N 1.31515 * 119.99696 * 0.02562 * 18 16 14 20 20 Si 1.86796 * 120.00304 * 180.02562 * 18 16 14 21 21 H 1.48491 * 109.47322 * 90.00057 * 20 18 16 22 22 H 1.48510 * 109.47070 * 210.00288 * 20 18 16 23 23 H 1.48503 * 109.46908 * 329.99651 * 20 18 16 24 24 C 1.46851 * 110.99938 * 0.50951 * 10 9 8 25 25 C 1.38904 * 120.65050 * 0.52158 * 9 8 7 26 26 H 1.09001 * 109.46507 * 299.99700 * 1 2 3 27 27 H 1.08994 * 109.46927 * 59.99466 * 1 2 3 28 28 H 1.08995 * 109.47299 * 180.02562 * 1 2 3 29 29 H 1.09011 * 109.47038 * 240.00174 * 2 1 3 30 30 H 1.09005 * 109.46258 * 60.00458 * 3 2 1 31 31 H 1.08999 * 109.46993 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46869 * 300.00481 * 3 2 1 33 33 H 1.08001 * 120.37335 * 359.95775 * 6 5 4 34 34 H 1.08002 * 119.54054 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.46258 * 305.85340 * 11 10 9 36 36 H 1.08997 * 109.46618 * 65.83253 * 11 10 9 37 37 H 1.08993 * 109.50019 * 60.75813 * 12 11 10 38 38 H 1.08994 * 109.49885 * 180.87863 * 12 11 10 39 39 H 1.09006 * 109.51872 * 177.55875 * 13 12 11 40 40 H 1.08999 * 109.52285 * 297.68551 * 13 12 11 41 41 H 0.97006 * 120.00076 * 179.97438 * 19 18 16 42 42 H 1.08998 * 109.45977 * 294.17640 * 24 10 9 43 43 H 1.08998 * 109.46472 * 54.14039 * 24 10 9 44 44 H 1.07996 * 120.48833 * 179.77206 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2467 -1.2214 1.0989 6 6 4.0537 -1.0256 -0.0218 7 6 5.3077 -1.5959 -0.0566 8 7 5.7493 -2.3258 0.9514 9 6 5.0172 -2.5323 2.0361 10 7 5.5272 -3.3036 3.0742 11 6 4.6340 -4.4275 3.3828 12 6 5.1503 -5.1666 4.6195 13 6 6.5682 -5.6769 4.3479 14 6 7.4671 -4.4927 3.9817 15 1 7.5186 -3.8011 4.8227 16 6 8.8506 -4.9933 3.6554 17 1 9.2733 -4.8133 2.6780 18 6 9.5767 -5.6809 4.6046 19 7 9.0617 -5.9004 5.7946 20 14 11.2918 -6.3006 4.2004 21 1 12.2901 -5.2588 4.5510 22 1 11.5689 -7.5341 4.9797 23 1 11.3799 -6.6021 2.7489 24 6 6.8836 -3.7731 2.7636 25 6 3.7430 -1.9900 2.1442 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8901 30 1 1.6768 1.9562 0.8901 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 3.6997 -0.4338 -0.8530 34 1 5.9363 -1.4476 -0.9223 35 1 3.6300 -4.0504 3.5780 36 1 4.6062 -5.1127 2.5356 37 1 5.1654 -4.4857 5.4704 38 1 4.4958 -6.0100 4.8390 39 1 6.9565 -6.1664 5.2412 40 1 6.5474 -6.3885 3.5225 41 1 9.5723 -6.3845 6.4624 42 1 6.8452 -4.4613 1.9192 43 1 7.5136 -2.9209 2.5090 44 1 3.1470 -2.1630 3.0281 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166742828.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:29 Heat of formation + Delta-G solvation = -21.039635 kcal Electronic energy + Delta-G solvation = -23247.245536 eV Core-core repulsion = 19970.895890 eV Total energy + Delta-G solvation = -3276.349646 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.92732 -40.41556 -38.79604 -35.67209 -34.44517 -33.68564 -32.29771 -31.47210 -30.55975 -28.16421 -27.04460 -25.69696 -24.59697 -23.61725 -22.88021 -21.67424 -20.50030 -19.49503 -18.39499 -17.74913 -17.12463 -16.78664 -16.52193 -16.28263 -15.86036 -15.74496 -15.16813 -14.92943 -14.73259 -14.62361 -14.35191 -14.14536 -13.93440 -13.50220 -13.38247 -13.32258 -13.00865 -12.86197 -12.68387 -12.56255 -12.45727 -11.97702 -11.89091 -11.79577 -11.68838 -11.48807 -11.05029 -10.89666 -10.68997 -10.37978 -10.36915 -9.84287 -9.06795 -8.08642 -6.22306 0.16050 0.41270 1.41949 1.42223 1.53021 1.98410 2.43046 2.65041 2.94749 3.18439 3.59348 3.74715 3.88172 3.97489 4.03415 4.10456 4.14793 4.19430 4.21388 4.33076 4.53723 4.54892 4.68716 4.71527 4.80421 4.80883 4.81329 4.87362 4.91080 4.94646 5.00455 5.08211 5.12664 5.25452 5.28611 5.31765 5.34829 5.50236 5.63015 5.79563 6.01016 6.14208 6.25833 6.35424 6.39408 6.87326 7.16165 7.45140 8.96494 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.034048 B = 0.003290 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.172268 B = 8509.885057 C = 9103.476357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.065 3.935 3 C -0.178 4.178 4 O -0.318 6.318 5 C 0.191 3.809 6 C -0.285 4.285 7 C 0.153 3.847 8 N -0.574 5.574 9 C 0.334 3.666 10 N -0.488 5.488 11 C 0.072 3.928 12 C -0.110 4.110 13 C -0.106 4.106 14 C 0.050 3.950 15 H -0.003 1.003 16 C -0.536 4.536 17 H 0.049 0.951 18 C 0.016 3.984 19 N -0.914 5.914 20 Si 0.956 3.044 21 H -0.276 1.276 22 H -0.280 1.280 23 H -0.270 1.270 24 C 0.105 3.895 25 C -0.240 4.240 26 H 0.063 0.937 27 H 0.103 0.897 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.169 0.831 34 H 0.183 0.817 35 H 0.100 0.900 36 H 0.037 0.963 37 H 0.057 0.943 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.026 0.974 41 H 0.262 0.738 42 H 0.025 0.975 43 H 0.053 0.947 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.994 11.303 -13.369 25.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.010 3.990 3 C -0.236 4.236 4 O -0.230 6.230 5 C 0.137 3.863 6 C -0.307 4.307 7 C -0.004 4.004 8 N -0.293 5.293 9 C 0.104 3.896 10 N -0.204 5.204 11 C -0.053 4.053 12 C -0.148 4.148 13 C -0.144 4.144 14 C 0.031 3.969 15 H 0.015 0.985 16 C -0.574 4.574 17 H 0.067 0.933 18 C -0.183 4.183 19 N -0.553 5.553 20 Si 0.781 3.219 21 H -0.202 1.202 22 H -0.205 1.205 23 H -0.194 1.194 24 C -0.021 4.021 25 C -0.263 4.263 26 H 0.082 0.918 27 H 0.121 0.879 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.116 0.884 33 H 0.186 0.814 34 H 0.200 0.800 35 H 0.118 0.882 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.103 0.897 39 H 0.084 0.916 40 H 0.045 0.955 41 H 0.071 0.929 42 H 0.044 0.956 43 H 0.072 0.928 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -17.277 11.100 -12.594 24.089 hybrid contribution 0.570 -0.355 -0.415 0.790 sum -16.707 10.745 -13.009 23.744 Atomic orbital electron populations 1.21896 0.90878 1.03361 1.04195 1.22870 0.96606 0.93087 0.86469 1.22392 1.01816 0.95213 1.04151 1.86110 1.28056 1.67742 1.41071 1.19036 0.84760 0.89345 0.93148 1.22294 0.97169 1.10278 1.00913 1.22866 0.93385 0.88799 0.95380 1.67763 1.38465 1.21362 1.01698 1.19826 0.89108 0.93418 0.87254 1.59056 1.05028 1.22398 1.33910 1.22249 0.95555 0.89585 0.97923 1.21639 0.97041 0.99474 0.96658 1.21503 0.93699 0.98413 1.00834 1.18677 0.93321 0.92897 0.92023 0.98457 1.21434 1.01094 1.35898 0.98995 0.93297 1.25697 1.01697 0.96088 0.94821 1.70020 1.38506 1.41810 1.04998 0.85597 0.80123 0.77848 0.78330 1.20205 1.20539 1.19420 1.21751 0.85855 0.97349 0.97165 1.20756 0.97023 1.06609 1.01959 0.91763 0.87879 0.92000 0.89522 0.92031 0.92515 0.88367 0.81388 0.79989 0.88213 0.94440 0.92386 0.89685 0.91626 0.95507 0.92929 0.95643 0.92799 0.83912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.56 71.98 0.69 -0.81 16 2 C 0.06 0.91 2.85 30.59 0.09 1.00 16 3 C -0.18 -2.10 9.19 71.98 0.66 -1.44 16 4 O -0.32 -7.14 9.81 -90.78 -0.89 -8.03 16 5 C 0.19 4.96 6.64 22.73 0.15 5.11 16 6 C -0.28 -6.32 8.31 22.47 0.19 -6.13 16 7 C 0.15 4.05 11.17 84.56 0.94 5.00 16 8 N -0.57 -20.71 8.68 -193.49 -1.68 -22.39 16 9 C 0.33 12.27 6.40 132.97 0.85 13.12 16 10 N -0.49 -19.88 4.68 -702.11 -3.28 -23.16 16 11 C 0.07 2.55 5.25 86.33 0.45 3.00 16 12 C -0.11 -4.24 6.09 30.65 0.19 -4.06 16 13 C -0.11 -5.19 5.02 30.67 0.15 -5.04 16 14 C 0.05 2.66 2.26 -11.49 -0.03 2.63 16 15 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 16 C -0.54 -30.99 8.56 25.60 0.22 -30.77 16 17 H 0.05 2.82 7.74 -2.91 -0.02 2.79 16 18 C 0.02 0.90 5.30 84.65 0.45 1.35 16 19 N -0.91 -53.81 11.35 21.45 0.24 -53.57 16 20 Si 0.96 44.82 29.54 68.60 2.03 46.84 16 21 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 22 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 23 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 24 C 0.11 4.99 3.87 86.32 0.33 5.33 16 25 C -0.24 -7.44 9.14 22.59 0.21 -7.23 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.09 1.02 6.37 -2.38 -0.02 1.01 16 30 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.06 0.78 6.93 -2.39 -0.02 0.77 16 32 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.17 2.46 5.59 -2.91 -0.02 2.45 16 34 H 0.18 3.54 8.06 -2.91 -0.02 3.52 16 35 H 0.10 2.92 6.68 -2.39 -0.02 2.91 16 36 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 39 H 0.07 3.57 6.15 -2.38 -0.01 3.56 16 40 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.26 14.58 8.31 -92.70 -0.77 13.81 16 42 H 0.03 1.23 8.11 -2.39 -0.02 1.22 16 43 H 0.05 2.69 7.71 -2.39 -0.02 2.67 16 44 H 0.14 4.17 7.15 -2.91 -0.02 4.15 16 Total: -1.00 -68.24 345.23 2.93 -65.30 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.97 Total: 13.92 kcal Atomic # 6 Polarization: -24.48 SS G_CDS: 5.55 Total: -18.93 kcal Atomic # 7 Polarization: -94.39 SS G_CDS: -4.72 Total: -99.11 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -0.89 Total: -8.03 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -68.24 2.93 -65.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166742828.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.264 kcal (2) G-P(sol) polarization free energy of solvation -68.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds