Wall clock time and date at job start Tue Mar 31 2020 06:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46926 * 2 1 4 4 O 1.42894 * 109.47165 * 120.00005 * 2 1 3 5 5 C 1.35675 * 117.00131 * 150.00307 * 4 2 1 6 6 C 1.38782 * 119.63944 * 180.02562 * 5 4 2 7 7 C 1.38590 * 119.27183 * 180.02562 * 6 5 4 8 8 C 1.38496 * 118.57283 * 359.97438 * 7 6 5 9 9 C 1.38980 * 119.22124 * 0.02562 * 8 7 6 10 10 N 1.38993 * 119.67084 * 179.97438 * 9 8 7 11 11 C 1.46844 * 111.00113 * 55.78704 * 10 9 8 12 12 C 1.53036 * 109.52085 * 185.84027 * 11 10 9 13 13 C 1.53114 * 109.28047 * 300.81827 * 12 11 10 14 14 C 1.53121 * 109.15992 * 57.65972 * 13 12 11 15 15 H 1.09002 * 109.50538 * 62.28344 * 14 13 12 16 16 C 1.50695 * 109.53552 * 182.38502 * 14 13 12 17 17 H 1.08006 * 120.00105 * 119.90184 * 16 14 13 18 18 C 1.37879 * 120.00152 * 299.89637 * 16 14 13 19 19 N 1.31515 * 120.00100 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 120.00157 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46786 * 90.00492 * 20 18 16 22 22 H 1.48500 * 109.47185 * 209.99921 * 20 18 16 23 23 H 1.48497 * 109.47402 * 330.00470 * 20 18 16 24 24 C 1.46847 * 111.00341 * 179.97438 * 10 9 8 25 25 N 1.32324 * 119.63748 * 0.27203 * 5 4 2 26 26 H 1.09002 * 109.46975 * 300.00018 * 1 2 3 27 27 H 1.09001 * 109.47315 * 60.00254 * 1 2 3 28 28 H 1.09004 * 109.46781 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46975 * 239.99982 * 2 1 3 30 30 H 1.09001 * 109.46914 * 59.99822 * 3 2 1 31 31 H 1.09002 * 109.46878 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46916 * 299.99990 * 3 2 1 33 33 H 1.07997 * 120.36504 * 359.97438 * 6 5 4 34 34 H 1.08004 * 120.71008 * 180.02562 * 7 6 5 35 35 H 1.07994 * 120.39087 * 180.02562 * 8 7 6 36 36 H 1.08993 * 109.46353 * 305.85300 * 11 10 9 37 37 H 1.08999 * 109.46253 * 65.82645 * 11 10 9 38 38 H 1.09002 * 109.50843 * 60.76520 * 12 11 10 39 39 H 1.09003 * 109.50039 * 180.87891 * 12 11 10 40 40 H 1.08999 * 109.52750 * 297.75107 * 13 12 11 41 41 H 1.09007 * 109.52737 * 177.56226 * 13 12 11 42 42 H 0.97000 * 120.00344 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.46500 * 54.13852 * 24 10 9 44 44 H 1.09004 * 109.45191 * 294.17366 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 3.1988 -1.3129 1.0652 6 6 3.7128 -1.9853 2.1651 7 6 4.9317 -2.6353 2.0531 8 6 5.5972 -2.5906 0.8393 9 6 5.0261 -1.8991 -0.2224 10 7 5.6862 -1.8478 -1.4446 11 6 5.9752 -3.1982 -1.9437 12 6 6.8264 -3.1033 -3.2120 13 6 6.0676 -2.2990 -4.2711 14 6 5.7365 -0.9139 -3.7086 15 1 6.6610 -0.3809 -3.4863 16 6 4.9385 -0.1357 -4.7228 17 1 3.9462 0.2127 -4.4771 18 6 5.4752 0.1316 -5.9644 19 7 6.6834 -0.2930 -6.2639 20 14 4.4857 1.0955 -7.2218 21 1 4.7640 2.5457 -7.0643 22 1 4.8692 0.6638 -8.5900 23 1 3.0376 0.8436 -7.0109 24 6 4.9167 -1.0728 -2.4262 25 7 3.8612 -1.2843 -0.0799 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 3.1693 -2.0012 3.0982 34 1 5.3531 -3.1660 2.8941 35 1 6.5486 -3.0871 0.7193 36 1 6.5186 -3.7581 -1.1827 37 1 5.0397 -3.7091 -2.1716 38 1 7.7680 -2.6048 -2.9819 39 1 7.0276 -4.1053 -3.5910 40 1 5.1443 -2.8173 -4.5300 41 1 6.6880 -2.1920 -5.1610 42 1 7.0608 -0.1053 -7.1375 43 1 4.6909 -0.0886 -2.0156 44 1 3.9863 -1.5942 -2.6516 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166743411.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:40 Heat of formation + Delta-G solvation = -4.287222 kcal Electronic energy + Delta-G solvation = -23924.451719 eV Core-core repulsion = 20648.828513 eV Total energy + Delta-G solvation = -3275.623206 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.67903 -38.89238 -37.29389 -33.97807 -32.97082 -32.43937 -31.34070 -30.01773 -28.66880 -27.20539 -25.12919 -24.29765 -23.27580 -21.93361 -21.27468 -20.75391 -18.74618 -18.22136 -16.86898 -16.13186 -15.85355 -15.55839 -15.22934 -14.59793 -14.40484 -14.24695 -13.87881 -13.48974 -13.43028 -12.90621 -12.73235 -12.57502 -12.42082 -12.26720 -12.18517 -11.91623 -11.83779 -11.68399 -10.97531 -10.86658 -10.83065 -10.69557 -10.61112 -10.19580 -9.91197 -9.87013 -9.51507 -9.33725 -9.16858 -8.88665 -8.67758 -8.31007 -7.54664 -5.99743 -4.05408 1.42709 1.52293 3.16715 3.30119 3.36874 3.39803 3.82196 4.12399 4.43325 4.70917 4.94543 5.05049 5.12711 5.26768 5.30216 5.33199 5.37402 5.49981 5.59619 5.60175 5.63683 5.75603 5.84463 5.89820 5.96626 6.02578 6.10466 6.19109 6.29739 6.37897 6.40060 6.43042 6.56941 6.61249 6.70712 6.92241 7.03273 7.27080 7.30061 7.49877 7.73124 7.76482 8.02515 8.09808 8.24752 8.45199 8.97923 9.58915 11.06645 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.014131 B = 0.005460 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.923945 B = 5126.910798 C = 6811.524800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.080 3.920 3 C -0.166 4.166 4 O -0.306 6.306 5 C 0.349 3.651 6 C -0.239 4.239 7 C -0.023 4.023 8 C -0.237 4.237 9 C 0.366 3.634 10 N -0.475 5.475 11 C 0.069 3.931 12 C -0.119 4.119 13 C -0.114 4.114 14 C 0.050 3.950 15 H 0.034 0.966 16 C -0.511 4.511 17 H 0.055 0.945 18 C 0.064 3.936 19 N -0.889 5.889 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.081 3.919 25 N -0.570 5.570 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.092 0.908 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.070 0.930 37 H 0.038 0.962 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.033 0.967 41 H 0.094 0.906 42 H 0.260 0.740 43 H 0.070 0.930 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.708 -4.544 14.016 15.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.024 3.976 3 C -0.224 4.224 4 O -0.214 6.214 5 C 0.169 3.831 6 C -0.261 4.261 7 C -0.048 4.048 8 C -0.260 4.260 9 C 0.133 3.867 10 N -0.191 5.191 11 C -0.056 4.056 12 C -0.157 4.157 13 C -0.152 4.152 14 C 0.031 3.969 15 H 0.052 0.948 16 C -0.550 4.550 17 H 0.073 0.927 18 C -0.138 4.138 19 N -0.528 5.528 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.045 4.045 25 N -0.299 5.299 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.110 0.890 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.151 0.849 34 H 0.154 0.846 35 H 0.152 0.848 36 H 0.088 0.912 37 H 0.056 0.944 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.051 0.949 41 H 0.112 0.888 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.642 -3.828 13.352 14.992 hybrid contribution -0.711 -0.056 -0.313 0.779 sum -6.353 -3.884 13.039 15.015 Atomic orbital electron populations 1.21893 0.93204 1.02694 1.02748 1.22330 0.94065 0.92965 0.88240 1.22187 1.02487 0.95491 1.02207 1.86254 1.31978 1.64419 1.38729 1.19576 0.85443 0.88846 0.89249 1.20769 0.99388 1.07010 0.98889 1.21130 0.92549 0.94346 0.96791 1.21389 1.03320 1.07771 0.93494 1.19738 0.85722 0.88571 0.92626 1.59132 1.42009 1.15467 1.02474 1.22211 0.99340 0.86183 0.97897 1.21740 0.99248 1.00031 0.94715 1.21706 0.98684 0.96031 0.98741 1.18765 0.95524 0.93236 0.89335 0.94818 1.21081 1.01622 1.34173 0.98138 0.92714 1.24920 0.94913 0.95752 0.98185 1.69880 1.15084 1.46002 1.21822 0.86622 0.80442 0.80322 0.80773 1.20696 1.21264 1.19976 1.22262 0.94423 0.96169 0.91636 1.67225 1.09662 1.27828 1.25221 0.91945 0.90499 0.92066 0.88958 0.92453 0.91778 0.91010 0.84947 0.84596 0.84750 0.91210 0.94351 0.91709 0.92661 0.94859 0.88759 0.93030 0.91133 0.94687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.56 37.16 0.36 -1.28 16 2 C 0.08 1.13 3.11 -26.73 -0.08 1.05 16 3 C -0.17 -2.25 9.53 37.16 0.35 -1.89 16 4 O -0.31 -4.66 9.76 -18.73 -0.18 -4.85 16 5 C 0.35 5.61 7.45 -17.14 -0.13 5.48 16 6 C -0.24 -3.21 10.04 -39.25 -0.39 -3.61 16 7 C -0.02 -0.28 10.16 -39.36 -0.40 -0.68 16 8 C -0.24 -3.40 9.18 -39.21 -0.36 -3.76 16 9 C 0.37 6.44 6.40 -155.01 -0.99 5.45 16 10 N -0.48 -9.11 4.68 -173.26 -0.81 -9.92 16 11 C 0.07 1.18 5.24 -3.84 -0.02 1.16 16 12 C -0.12 -2.22 6.09 -26.65 -0.16 -2.38 16 13 C -0.11 -2.61 5.03 -26.61 -0.13 -2.75 16 14 C 0.05 1.25 2.26 -91.69 -0.21 1.04 16 15 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 16 C -0.51 -13.91 8.56 -34.44 -0.29 -14.20 16 17 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 18 C 0.06 1.74 5.31 -17.82 -0.09 1.64 16 19 N -0.89 -25.03 11.36 55.43 0.63 -24.40 16 20 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 24 C 0.08 1.77 3.87 -3.83 -0.01 1.75 16 25 N -0.57 -10.21 6.96 -12.51 -0.09 -10.30 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 1.51 6.98 -51.93 -0.36 1.14 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 35 H 0.13 1.70 7.13 -52.49 -0.37 1.32 16 36 H 0.07 1.00 6.66 -51.93 -0.35 0.65 16 37 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.09 2.43 6.16 -51.93 -0.32 2.11 16 42 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.07 1.62 7.70 -51.93 -0.40 1.22 16 44 H 0.03 0.79 8.12 -51.93 -0.42 0.37 16 LS Contribution 349.89 15.07 5.27 5.27 Total: -1.00 -28.84 349.89 -10.04 -38.88 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -7.26 Total: 2.17 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -2.58 Total: -12.97 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: -0.27 Total: -44.61 kcal Atomic # 8 Polarization: -4.66 SS G_CDS: -0.18 Total: -4.85 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.84 -10.04 -38.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166743411.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.590 kcal (2) G-P(sol) polarization free energy of solvation -28.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds