Wall clock time and date at job start Tue Mar 31 2020 06:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46926 * 2 1 4 4 O 1.42894 * 109.47165 * 120.00005 * 2 1 3 5 5 C 1.35675 * 117.00131 * 150.00307 * 4 2 1 6 6 C 1.38782 * 119.63944 * 180.02562 * 5 4 2 7 7 C 1.38590 * 119.27183 * 180.02562 * 6 5 4 8 8 C 1.38496 * 118.57283 * 359.97438 * 7 6 5 9 9 C 1.38980 * 119.22124 * 0.02562 * 8 7 6 10 10 N 1.38993 * 119.67084 * 179.97438 * 9 8 7 11 11 C 1.46844 * 111.00113 * 55.78704 * 10 9 8 12 12 C 1.53036 * 109.52085 * 185.84027 * 11 10 9 13 13 C 1.53114 * 109.28047 * 300.81827 * 12 11 10 14 14 C 1.53121 * 109.15992 * 57.65972 * 13 12 11 15 15 H 1.09002 * 109.50538 * 62.28344 * 14 13 12 16 16 C 1.50695 * 109.53552 * 182.38502 * 14 13 12 17 17 H 1.08006 * 120.00105 * 119.90184 * 16 14 13 18 18 C 1.37879 * 120.00152 * 299.89637 * 16 14 13 19 19 N 1.31515 * 120.00100 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 120.00157 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46786 * 90.00492 * 20 18 16 22 22 H 1.48500 * 109.47185 * 209.99921 * 20 18 16 23 23 H 1.48497 * 109.47402 * 330.00470 * 20 18 16 24 24 C 1.46847 * 111.00341 * 179.97438 * 10 9 8 25 25 N 1.32324 * 119.63748 * 0.27203 * 5 4 2 26 26 H 1.09002 * 109.46975 * 300.00018 * 1 2 3 27 27 H 1.09001 * 109.47315 * 60.00254 * 1 2 3 28 28 H 1.09004 * 109.46781 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46975 * 239.99982 * 2 1 3 30 30 H 1.09001 * 109.46914 * 59.99822 * 3 2 1 31 31 H 1.09002 * 109.46878 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46916 * 299.99990 * 3 2 1 33 33 H 1.07997 * 120.36504 * 359.97438 * 6 5 4 34 34 H 1.08004 * 120.71008 * 180.02562 * 7 6 5 35 35 H 1.07994 * 120.39087 * 180.02562 * 8 7 6 36 36 H 1.08993 * 109.46353 * 305.85300 * 11 10 9 37 37 H 1.08999 * 109.46253 * 65.82645 * 11 10 9 38 38 H 1.09002 * 109.50843 * 60.76520 * 12 11 10 39 39 H 1.09003 * 109.50039 * 180.87891 * 12 11 10 40 40 H 1.08999 * 109.52750 * 297.75107 * 13 12 11 41 41 H 1.09007 * 109.52737 * 177.56226 * 13 12 11 42 42 H 0.97000 * 120.00344 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.46500 * 54.13852 * 24 10 9 44 44 H 1.09004 * 109.45191 * 294.17366 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 3.1988 -1.3129 1.0652 6 6 3.7128 -1.9853 2.1651 7 6 4.9317 -2.6353 2.0531 8 6 5.5972 -2.5906 0.8393 9 6 5.0261 -1.8991 -0.2224 10 7 5.6862 -1.8478 -1.4446 11 6 5.9752 -3.1982 -1.9437 12 6 6.8264 -3.1033 -3.2120 13 6 6.0676 -2.2990 -4.2711 14 6 5.7365 -0.9139 -3.7086 15 1 6.6610 -0.3809 -3.4863 16 6 4.9385 -0.1357 -4.7228 17 1 3.9462 0.2127 -4.4771 18 6 5.4752 0.1316 -5.9644 19 7 6.6834 -0.2930 -6.2639 20 14 4.4857 1.0955 -7.2218 21 1 4.7640 2.5457 -7.0643 22 1 4.8692 0.6638 -8.5900 23 1 3.0376 0.8436 -7.0109 24 6 4.9167 -1.0728 -2.4262 25 7 3.8612 -1.2843 -0.0799 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 3.1693 -2.0012 3.0982 34 1 5.3531 -3.1660 2.8941 35 1 6.5486 -3.0871 0.7193 36 1 6.5186 -3.7581 -1.1827 37 1 5.0397 -3.7091 -2.1716 38 1 7.7680 -2.6048 -2.9819 39 1 7.0276 -4.1053 -3.5910 40 1 5.1443 -2.8173 -4.5300 41 1 6.6880 -2.1920 -5.1610 42 1 7.0608 -0.1053 -7.1375 43 1 4.6909 -0.0886 -2.0156 44 1 3.9863 -1.5942 -2.6516 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166743411.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:39 Heat of formation + Delta-G solvation = -20.758448 kcal Electronic energy + Delta-G solvation = -23925.165965 eV Core-core repulsion = 20648.828513 eV Total energy + Delta-G solvation = -3276.337452 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.90176 -40.21922 -38.64660 -35.70072 -34.22602 -33.78669 -32.84721 -31.75004 -29.95917 -28.21211 -27.05851 -25.73276 -24.58402 -23.38735 -22.75086 -21.93096 -20.49442 -19.48490 -18.49412 -17.76444 -17.03515 -16.76833 -16.66509 -16.28164 -15.77876 -15.56426 -15.27390 -14.95679 -14.69472 -14.48145 -14.16869 -14.09800 -13.84208 -13.48746 -13.25097 -13.19775 -12.97776 -12.89279 -12.85700 -12.67637 -12.55010 -11.98137 -11.89732 -11.80724 -11.76144 -11.48093 -11.03230 -10.95982 -10.75912 -10.48525 -10.39534 -10.14168 -8.83298 -8.10932 -6.24539 0.25650 0.44208 1.39446 1.39910 1.50204 2.07942 2.39290 2.58479 2.90969 3.16306 3.46091 3.89281 4.00354 4.05088 4.12690 4.15792 4.18626 4.26388 4.31052 4.39275 4.52509 4.55292 4.64641 4.67009 4.78316 4.79819 4.82836 4.91634 4.93947 4.97699 5.04685 5.09678 5.16138 5.21019 5.30195 5.32330 5.41101 5.58127 5.61250 5.72841 5.98788 6.11643 6.14896 6.36111 6.43929 6.84585 7.04067 7.42929 8.94132 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.014131 B = 0.005460 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.923945 B = 5126.910798 C = 6811.524800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.077 3.923 3 C -0.160 4.160 4 O -0.309 6.309 5 C 0.322 3.678 6 C -0.228 4.228 7 C -0.009 4.009 8 C -0.230 4.230 9 C 0.330 3.670 10 N -0.486 5.486 11 C 0.072 3.928 12 C -0.111 4.111 13 C -0.106 4.106 14 C 0.050 3.950 15 H -0.003 1.003 16 C -0.536 4.536 17 H 0.046 0.954 18 C 0.018 3.982 19 N -0.913 5.913 20 Si 0.953 3.047 21 H -0.276 1.276 22 H -0.279 1.279 23 H -0.270 1.270 24 C 0.109 3.891 25 N -0.598 5.598 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.034 0.966 32 H 0.078 0.922 33 H 0.160 0.840 34 H 0.185 0.815 35 H 0.157 0.843 36 H 0.109 0.891 37 H 0.033 0.967 38 H 0.059 0.941 39 H 0.085 0.915 40 H 0.023 0.977 41 H 0.064 0.936 42 H 0.262 0.738 43 H 0.048 0.952 44 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.191 -5.744 16.219 18.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.021 3.979 3 C -0.218 4.218 4 O -0.217 6.217 5 C 0.142 3.858 6 C -0.250 4.250 7 C -0.034 4.034 8 C -0.253 4.253 9 C 0.100 3.900 10 N -0.202 5.202 11 C -0.053 4.053 12 C -0.148 4.148 13 C -0.144 4.144 14 C 0.031 3.969 15 H 0.015 0.985 16 C -0.574 4.574 17 H 0.064 0.936 18 C -0.181 4.181 19 N -0.552 5.552 20 Si 0.778 3.222 21 H -0.202 1.202 22 H -0.205 1.205 23 H -0.195 1.195 24 C -0.018 4.018 25 N -0.328 5.328 26 H 0.096 0.904 27 H 0.107 0.893 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.053 0.947 32 H 0.097 0.903 33 H 0.178 0.822 34 H 0.202 0.798 35 H 0.174 0.826 36 H 0.127 0.873 37 H 0.052 0.948 38 H 0.078 0.922 39 H 0.103 0.897 40 H 0.042 0.958 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -6.129 -5.036 15.578 17.482 hybrid contribution -0.574 0.315 -0.898 1.111 sum -6.702 -4.721 14.681 16.814 Atomic orbital electron populations 1.21869 0.90589 1.03243 1.04059 1.22386 0.96012 0.92555 0.86953 1.22135 1.00511 0.95718 1.03409 1.86242 1.31923 1.64667 1.38916 1.20011 0.85847 0.90158 0.89779 1.21235 0.99728 1.05170 0.98828 1.21664 0.91420 0.93120 0.97190 1.21679 1.03931 1.06534 0.93109 1.19933 0.86539 0.90885 0.92657 1.59173 1.42252 1.16326 1.02462 1.22273 0.99202 0.85701 0.98117 1.21637 0.98439 1.00611 0.94146 1.21497 0.98221 0.95640 0.99089 1.18669 0.93936 0.93739 0.90509 0.98454 1.21400 1.01656 1.35041 0.99313 0.93569 1.25661 0.95914 0.96597 0.99901 1.70009 1.16255 1.46654 1.22267 0.85643 0.79152 0.78962 0.78436 1.20190 1.20483 1.19481 1.21672 0.93433 0.95570 0.91132 1.67080 1.10477 1.28381 1.26892 0.90427 0.89335 0.91906 0.92111 0.90640 0.94714 0.90333 0.82219 0.79781 0.82550 0.87262 0.94830 0.92220 0.89665 0.95777 0.91714 0.92903 0.93367 0.96326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.56 71.98 0.69 -2.29 16 2 C 0.08 2.22 3.11 30.60 0.10 2.32 16 3 C -0.16 -4.44 9.53 71.98 0.69 -3.75 16 4 O -0.31 -9.32 9.76 -89.92 -0.88 -10.20 16 5 C 0.32 10.14 7.45 84.75 0.63 10.77 16 6 C -0.23 -5.44 10.04 22.48 0.23 -5.22 16 7 C -0.01 -0.18 10.16 22.42 0.23 0.05 16 8 C -0.23 -5.91 9.18 22.51 0.21 -5.71 16 9 C 0.33 11.51 6.40 133.00 0.85 12.36 16 10 N -0.49 -18.87 4.68 -702.08 -3.28 -22.15 16 11 C 0.07 2.39 5.24 86.33 0.45 2.84 16 12 C -0.11 -4.06 6.09 30.64 0.19 -3.87 16 13 C -0.11 -5.08 5.03 30.67 0.15 -4.93 16 14 C 0.05 2.65 2.26 -11.49 -0.03 2.62 16 15 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 16 C -0.54 -30.61 8.56 25.60 0.22 -30.39 16 17 H 0.05 2.64 7.74 -2.91 -0.02 2.61 16 18 C 0.02 1.03 5.31 84.66 0.45 1.48 16 19 N -0.91 -53.08 11.36 21.45 0.24 -52.84 16 20 Si 0.95 44.30 29.54 68.60 2.03 46.33 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 23 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 24 C 0.11 5.05 3.87 86.33 0.33 5.39 16 25 N -0.60 -21.91 6.96 -306.33 -2.13 -24.04 16 26 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.06 2.12 6.98 -2.39 -0.02 2.10 16 30 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 34 H 0.18 1.96 8.06 -2.91 -0.02 1.94 16 35 H 0.16 3.28 7.13 -2.91 -0.02 3.26 16 36 H 0.11 2.77 6.66 -2.39 -0.02 2.75 16 37 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.06 2.25 8.14 -2.39 -0.02 2.24 16 39 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 40 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.06 3.47 6.16 -2.38 -0.01 3.46 16 42 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 43 H 0.05 2.39 7.70 -2.39 -0.02 2.37 16 44 H 0.02 0.90 8.12 -2.38 -0.02 0.88 16 Total: -1.00 -66.90 349.89 2.32 -64.58 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.96 Total: 16.65 kcal Atomic # 6 Polarization: -23.71 SS G_CDS: 5.38 Total: -18.33 kcal Atomic # 7 Polarization: -93.86 SS G_CDS: -5.17 Total: -99.03 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: -0.88 Total: -10.20 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -66.90 2.32 -64.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166743411.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.822 kcal (2) G-P(sol) polarization free energy of solvation -66.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds