Wall clock time and date at job start Tue Mar 31 2020 06:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50703 * 109.47398 * 2 1 4 4 O 1.21283 * 119.99488 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00290 * 180.02562 * 3 2 1 6 6 C 1.46498 * 119.99828 * 180.27728 * 5 3 2 7 7 C 1.50700 * 109.46769 * 179.72341 * 6 5 3 8 8 C 1.38311 * 119.96057 * 269.71900 * 7 6 5 9 9 C 1.38266 * 120.14811 * 179.72985 * 8 7 6 10 10 C 1.38127 * 120.07371 * 0.54775 * 9 8 7 11 11 C 1.38885 * 119.92374 * 359.73322 * 10 9 8 12 12 N 1.39674 * 120.07369 * 180.02562 * 11 10 9 13 13 C 1.46499 * 119.99953 * 359.97241 * 12 11 10 14 14 C 1.53006 * 109.47097 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.46829 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.46852 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99809 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99808 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99691 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 120.00219 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47044 * 89.99908 * 20 18 16 22 22 H 1.48497 * 109.46874 * 209.99688 * 20 18 16 23 23 H 1.48498 * 109.47077 * 329.99957 * 20 18 16 24 24 C 1.38080 * 119.96506 * 90.00039 * 7 6 5 25 25 H 1.08998 * 109.47508 * 300.00200 * 1 2 3 26 26 H 1.09011 * 109.47182 * 60.00188 * 1 2 3 27 27 H 1.09007 * 109.47253 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47508 * 239.99800 * 2 1 3 29 29 H 1.09002 * 109.47337 * 120.00085 * 2 1 3 30 30 H 0.97001 * 119.99727 * 359.97438 * 5 3 2 31 31 H 1.09004 * 109.46963 * 299.72135 * 6 5 3 32 32 H 1.08994 * 109.47567 * 59.72287 * 6 5 3 33 33 H 1.08001 * 119.92853 * 359.97438 * 8 7 6 34 34 H 1.08001 * 119.96390 * 180.28300 * 9 8 7 35 35 H 1.07993 * 120.03491 * 179.75117 * 10 9 8 36 36 H 0.97001 * 120.00238 * 179.97438 * 12 11 10 37 37 H 1.09001 * 109.47131 * 300.00427 * 13 12 11 38 38 H 1.09004 * 109.47218 * 60.00388 * 13 12 11 39 39 H 1.08997 * 109.46957 * 299.99999 * 14 13 12 40 40 H 1.09004 * 109.46852 * 60.00063 * 14 13 12 41 41 H 1.09001 * 109.47429 * 300.00343 * 15 14 13 42 42 H 1.09004 * 109.47188 * 60.00469 * 15 14 13 43 43 H 0.96999 * 119.99563 * 179.97438 * 19 18 16 44 44 H 1.08000 * 120.03687 * 359.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3426 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8457 3.0483 0.0056 7 6 5.3527 3.0482 0.0105 8 6 6.0395 3.0501 1.2110 9 6 7.4221 3.0444 1.2201 10 6 8.1221 3.0482 0.0293 11 6 7.4355 3.0522 -1.1780 12 7 8.1402 3.0556 -2.3839 13 6 9.6052 3.0555 -2.3763 14 6 10.1227 3.0601 -3.8161 15 6 11.6527 3.0607 -3.8080 16 6 12.1625 3.0646 -5.2262 17 1 11.4650 3.0669 -6.0507 18 6 13.5193 3.0652 -5.4710 19 7 13.9642 3.0692 -6.7087 20 14 14.7258 3.0605 -4.0449 21 1 15.0453 1.6591 -3.6715 22 1 15.9712 3.7616 -4.4479 23 1 14.1199 3.7569 -2.8816 24 6 6.0462 3.0521 -1.1835 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.9877 0.9298 -0.0005 31 1 3.4852 3.5650 -0.8839 32 1 3.4795 3.5592 0.8960 33 1 5.4947 3.0521 2.1435 34 1 7.9554 3.0413 2.1592 35 1 9.2020 3.0479 0.0371 36 1 7.6596 3.0580 -3.2265 37 1 9.9658 3.9440 -1.8580 38 1 9.9658 2.1640 -1.8631 39 1 9.7620 2.1718 -4.3347 40 1 9.7621 3.9518 -4.3289 41 1 12.0131 3.9492 -3.2895 42 1 12.0137 2.1692 -3.2951 43 1 14.9188 3.0700 -6.8809 44 1 5.5093 3.0548 -2.1205 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168429531.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:29 Heat of formation + Delta-G solvation = -37.198759 kcal Electronic energy + Delta-G solvation = -21435.232410 eV Core-core repulsion = 18158.182052 eV Total energy + Delta-G solvation = -3277.050358 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.17963 -39.40040 -36.57264 -34.99484 -33.62194 -33.14503 -31.82396 -31.33200 -29.34363 -26.81022 -26.53475 -24.19297 -22.96296 -22.46466 -20.74268 -20.43415 -20.30290 -17.68028 -17.01929 -16.78146 -16.29643 -16.02139 -15.92769 -15.46049 -15.02757 -14.50442 -14.24965 -14.07819 -13.80102 -13.58865 -13.29314 -12.98028 -12.73021 -12.64574 -12.56410 -12.11916 -12.10026 -11.95158 -11.56789 -11.51744 -11.23724 -11.01002 -10.93293 -10.32233 -10.14618 -10.01446 -9.80329 -9.75285 -9.36939 -9.28924 -8.94190 -8.61065 -7.38109 -6.11258 -4.10346 1.19823 1.54916 2.36840 2.99945 3.25337 3.33284 3.35676 3.53377 3.84870 4.38526 4.39024 4.51739 4.71522 4.72752 4.78742 5.07747 5.16086 5.18896 5.22272 5.29566 5.37107 5.42166 5.47382 5.53062 5.53819 5.57164 5.73616 5.85860 5.89134 5.91843 6.10587 6.25695 6.36073 6.36570 6.44262 6.54299 6.70178 6.79920 7.14860 7.20722 7.28811 7.39053 7.70445 7.80431 7.93830 8.45275 8.92650 9.50451 11.02029 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.028515 B = 0.002189 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.689662 B =12785.717554 C =13372.695073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.145 4.145 3 C 0.509 3.491 4 O -0.544 6.544 5 N -0.726 5.726 6 C 0.162 3.838 7 C -0.066 4.066 8 C -0.171 4.171 9 C -0.072 4.072 10 C -0.192 4.192 11 C 0.223 3.777 12 N -0.742 5.742 13 C 0.118 3.882 14 C -0.113 4.113 15 C -0.010 4.010 16 C -0.523 4.523 17 H 0.071 0.929 18 C 0.066 3.934 19 N -0.902 5.902 20 Si 0.881 3.119 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.265 1.265 24 C -0.184 4.184 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.403 0.597 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.399 0.601 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.018 0.982 42 H 0.013 0.987 43 H 0.264 0.736 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.117 -5.130 17.251 27.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.185 4.185 3 C 0.296 3.704 4 O -0.421 6.421 5 N -0.378 5.378 6 C 0.039 3.961 7 C -0.067 4.067 8 C -0.192 4.192 9 C -0.091 4.091 10 C -0.215 4.215 11 C 0.118 3.882 12 N -0.369 5.369 13 C -0.005 4.005 14 C -0.151 4.151 15 C -0.048 4.048 16 C -0.561 4.561 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.541 5.541 20 Si 0.708 3.292 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.190 1.190 24 C -0.207 4.207 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.237 0.763 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.133 0.867 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.234 0.766 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.036 0.964 42 H 0.032 0.968 43 H 0.073 0.927 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -21.294 -4.443 17.132 27.689 hybrid contribution 1.117 -0.337 0.236 1.191 sum -20.177 -4.780 17.368 27.048 Atomic orbital electron populations 1.21528 0.92991 1.01599 1.03367 1.21640 0.98702 0.93710 1.04444 1.20847 0.81992 0.91951 0.75643 1.90708 1.55312 1.46629 1.49441 1.46144 1.07127 1.08880 1.75642 1.20178 0.89726 0.83261 1.02896 1.19448 0.93811 1.00301 0.93138 1.20716 0.94157 1.07411 0.96877 1.20867 0.93904 0.96939 0.97353 1.20776 1.00069 1.09488 0.91162 1.17891 0.90844 0.92583 0.86918 1.45006 1.06291 1.80663 1.04951 1.21636 0.78373 1.00613 0.99913 1.21671 0.99054 1.01785 0.92586 1.19500 0.90548 0.96495 0.98259 1.21093 0.92599 1.51200 0.91250 0.91038 1.25045 0.98464 0.94473 0.95553 1.69915 1.14313 1.50839 1.18986 0.86760 0.80684 0.78530 0.83201 1.20250 1.21315 1.18998 1.20457 0.92022 1.10350 0.97891 0.92011 0.91967 0.92061 0.88839 0.88903 0.76251 0.90781 0.90718 0.86653 0.86207 0.85896 0.76601 0.92529 0.92538 0.92167 0.92128 0.96388 0.96839 0.92655 0.86286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.20 37.15 0.34 -0.55 16 2 C -0.14 -0.86 6.42 -27.89 -0.18 -1.03 16 3 C 0.51 4.77 7.83 -10.98 -0.09 4.68 16 4 O -0.54 -7.31 15.98 5.55 0.09 -7.23 16 5 N -0.73 -5.85 5.55 -61.47 -0.34 -6.19 16 6 C 0.16 1.50 5.80 -5.19 -0.03 1.47 16 7 C -0.07 -0.65 5.25 -104.65 -0.55 -1.20 16 8 C -0.17 -1.65 9.70 -39.54 -0.38 -2.03 16 9 C -0.07 -0.73 10.04 -39.61 -0.40 -1.13 16 10 C -0.19 -2.29 9.31 -39.38 -0.37 -2.65 16 11 C 0.22 2.75 6.65 -83.79 -0.56 2.20 16 12 N -0.74 -9.61 5.73 -58.63 -0.34 -9.95 16 13 C 0.12 1.75 4.91 -4.04 -0.02 1.73 16 14 C -0.11 -2.05 5.27 -26.73 -0.14 -2.19 16 15 C -0.01 -0.23 4.04 -27.88 -0.11 -0.34 16 16 C -0.52 -14.56 9.66 -34.44 -0.33 -14.89 16 17 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 18 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 19 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 20 Si 0.88 21.23 27.47 -169.99 -4.67 16.56 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 23 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 24 C -0.18 -2.00 9.55 -39.38 -0.38 -2.38 16 25 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 26 H 0.06 0.48 8.10 -51.92 -0.42 0.06 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.40 2.50 8.46 -40.82 -0.35 2.16 16 31 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 32 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 33 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 34 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 35 H 0.12 1.46 6.73 -52.49 -0.35 1.10 16 36 H 0.40 4.74 8.49 -40.82 -0.35 4.40 16 37 H 0.06 0.84 7.95 -51.93 -0.41 0.43 16 38 H 0.06 0.83 7.95 -51.93 -0.41 0.41 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 42 H 0.01 0.30 7.57 -51.93 -0.39 -0.10 16 43 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 366.44 15.07 5.52 5.52 Total: -1.00 -32.27 366.44 -9.54 -41.80 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -7.29 Total: 2.67 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -3.29 Total: -16.53 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: 0.10 Total: -42.81 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: 0.09 Total: -7.23 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.27 -9.54 -41.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168429531.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.606 kcal (2) G-P(sol) polarization free energy of solvation -32.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds