Wall clock time and date at job start Tue Mar 31 2020 06:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50703 * 109.47398 * 2 1 4 4 O 1.21283 * 119.99488 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00290 * 180.02562 * 3 2 1 6 6 C 1.46498 * 119.99828 * 180.27728 * 5 3 2 7 7 C 1.50700 * 109.46769 * 179.72341 * 6 5 3 8 8 C 1.38311 * 119.96057 * 269.71900 * 7 6 5 9 9 C 1.38266 * 120.14811 * 179.72985 * 8 7 6 10 10 C 1.38127 * 120.07371 * 0.54775 * 9 8 7 11 11 C 1.38885 * 119.92374 * 359.73322 * 10 9 8 12 12 N 1.39674 * 120.07369 * 180.02562 * 11 10 9 13 13 C 1.46499 * 119.99953 * 359.97241 * 12 11 10 14 14 C 1.53006 * 109.47097 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.46829 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.46852 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99809 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99808 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99691 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 120.00219 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47044 * 89.99908 * 20 18 16 22 22 H 1.48497 * 109.46874 * 209.99688 * 20 18 16 23 23 H 1.48498 * 109.47077 * 329.99957 * 20 18 16 24 24 C 1.38080 * 119.96506 * 90.00039 * 7 6 5 25 25 H 1.08998 * 109.47508 * 300.00200 * 1 2 3 26 26 H 1.09011 * 109.47182 * 60.00188 * 1 2 3 27 27 H 1.09007 * 109.47253 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47508 * 239.99800 * 2 1 3 29 29 H 1.09002 * 109.47337 * 120.00085 * 2 1 3 30 30 H 0.97001 * 119.99727 * 359.97438 * 5 3 2 31 31 H 1.09004 * 109.46963 * 299.72135 * 6 5 3 32 32 H 1.08994 * 109.47567 * 59.72287 * 6 5 3 33 33 H 1.08001 * 119.92853 * 359.97438 * 8 7 6 34 34 H 1.08001 * 119.96390 * 180.28300 * 9 8 7 35 35 H 1.07993 * 120.03491 * 179.75117 * 10 9 8 36 36 H 0.97001 * 120.00238 * 179.97438 * 12 11 10 37 37 H 1.09001 * 109.47131 * 300.00427 * 13 12 11 38 38 H 1.09004 * 109.47218 * 60.00388 * 13 12 11 39 39 H 1.08997 * 109.46957 * 299.99999 * 14 13 12 40 40 H 1.09004 * 109.46852 * 60.00063 * 14 13 12 41 41 H 1.09001 * 109.47429 * 300.00343 * 15 14 13 42 42 H 1.09004 * 109.47188 * 60.00469 * 15 14 13 43 43 H 0.96999 * 119.99563 * 179.97438 * 19 18 16 44 44 H 1.08000 * 120.03687 * 359.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3426 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8457 3.0483 0.0056 7 6 5.3527 3.0482 0.0105 8 6 6.0395 3.0501 1.2110 9 6 7.4221 3.0444 1.2201 10 6 8.1221 3.0482 0.0293 11 6 7.4355 3.0522 -1.1780 12 7 8.1402 3.0556 -2.3839 13 6 9.6052 3.0555 -2.3763 14 6 10.1227 3.0601 -3.8161 15 6 11.6527 3.0607 -3.8080 16 6 12.1625 3.0646 -5.2262 17 1 11.4650 3.0669 -6.0507 18 6 13.5193 3.0652 -5.4710 19 7 13.9642 3.0692 -6.7087 20 14 14.7258 3.0605 -4.0449 21 1 15.0453 1.6591 -3.6715 22 1 15.9712 3.7616 -4.4479 23 1 14.1199 3.7569 -2.8816 24 6 6.0462 3.0521 -1.1835 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.9877 0.9298 -0.0005 31 1 3.4852 3.5650 -0.8839 32 1 3.4795 3.5592 0.8960 33 1 5.4947 3.0521 2.1435 34 1 7.9554 3.0413 2.1592 35 1 9.2020 3.0479 0.0371 36 1 7.6596 3.0580 -3.2265 37 1 9.9658 3.9440 -1.8580 38 1 9.9658 2.1640 -1.8631 39 1 9.7620 2.1718 -4.3347 40 1 9.7621 3.9518 -4.3289 41 1 12.0131 3.9492 -3.2895 42 1 12.0137 2.1692 -3.2951 43 1 14.9188 3.0700 -6.8809 44 1 5.5093 3.0548 -2.1205 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168429531.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:28 Heat of formation + Delta-G solvation = -57.877849 kcal Electronic energy + Delta-G solvation = -21436.129122 eV Core-core repulsion = 18158.182052 eV Total energy + Delta-G solvation = -3277.947070 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.95430 -40.23125 -37.65974 -36.01280 -35.18757 -33.76207 -33.51356 -32.09973 -30.58245 -28.03672 -27.54884 -24.96566 -24.31097 -23.35568 -21.97238 -21.53121 -21.18384 -18.95253 -18.41975 -17.71163 -17.19940 -16.78102 -16.65093 -16.53007 -16.35118 -16.09517 -15.15044 -14.99647 -14.76827 -14.58482 -14.40121 -14.35618 -13.91999 -13.69625 -13.37464 -13.36672 -13.12043 -12.73160 -12.71091 -12.62364 -12.34337 -12.01123 -11.88660 -11.82482 -11.67416 -11.63225 -11.33607 -11.06116 -10.82024 -10.77160 -10.11271 -9.75410 -8.30822 -8.30268 -6.35192 0.38308 0.72139 1.36855 1.38940 1.50624 1.66395 2.31985 2.36020 2.52947 3.03726 3.05327 3.68403 3.87571 3.99794 4.11191 4.21387 4.24511 4.25805 4.30392 4.37756 4.49574 4.55701 4.61694 4.68531 4.81488 4.84130 4.90918 4.98753 5.01499 5.01896 5.08039 5.12116 5.31699 5.41201 5.44473 5.45635 5.55332 5.62659 5.64040 5.73777 5.95897 6.25585 6.44133 6.56622 6.73344 6.85285 7.26492 7.29683 8.86440 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.028515 B = 0.002189 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.689662 B =12785.717554 C =13372.695073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.504 3.496 4 O -0.591 6.591 5 N -0.716 5.716 6 C 0.166 3.834 7 C -0.061 4.061 8 C -0.166 4.166 9 C -0.072 4.072 10 C -0.206 4.206 11 C 0.206 3.794 12 N -0.746 5.746 13 C 0.135 3.865 14 C -0.103 4.103 15 C -0.009 4.009 16 C -0.535 4.535 17 H 0.030 0.970 18 C 0.000 4.000 19 N -0.952 5.952 20 Si 0.953 3.047 21 H -0.265 1.265 22 H -0.286 1.286 23 H -0.242 1.242 24 C -0.187 4.187 25 H 0.047 0.953 26 H 0.044 0.956 27 H 0.083 0.917 28 H 0.114 0.886 29 H 0.118 0.882 30 H 0.414 0.586 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.134 0.866 34 H 0.142 0.858 35 H 0.122 0.878 36 H 0.402 0.598 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.024 0.976 42 H 0.024 0.976 43 H 0.266 0.734 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.255 -6.121 20.198 29.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.178 4.178 3 C 0.292 3.708 4 O -0.472 6.472 5 N -0.368 5.368 6 C 0.043 3.957 7 C -0.062 4.062 8 C -0.187 4.187 9 C -0.091 4.091 10 C -0.229 4.229 11 C 0.102 3.898 12 N -0.375 5.375 13 C 0.010 3.990 14 C -0.141 4.141 15 C -0.047 4.047 16 C -0.573 4.573 17 H 0.048 0.952 18 C -0.196 4.196 19 N -0.593 5.593 20 Si 0.776 3.224 21 H -0.190 1.190 22 H -0.212 1.212 23 H -0.166 1.166 24 C -0.210 4.210 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.102 0.898 28 H 0.132 0.868 29 H 0.136 0.864 30 H 0.251 0.749 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.152 0.848 34 H 0.159 0.841 35 H 0.140 0.860 36 H 0.237 0.763 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.075 0.925 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -21.445 -5.458 20.102 29.895 hybrid contribution 1.057 -0.027 -0.724 1.282 sum -20.388 -5.484 19.377 28.657 Atomic orbital electron populations 1.21540 0.93675 1.02555 1.01822 1.21697 0.98029 0.91492 1.06598 1.21521 0.81809 0.92976 0.74460 1.90690 1.56453 1.48323 1.51743 1.46074 1.07140 1.08789 1.74800 1.20061 0.89343 0.83928 1.02385 1.19478 0.93896 0.99841 0.93000 1.20974 0.94183 1.06063 0.97477 1.21129 0.94203 0.96056 0.97695 1.20934 1.00253 1.10072 0.91648 1.18034 0.91332 0.93772 0.86704 1.44822 1.05425 1.81649 1.05568 1.21296 0.79585 1.01004 0.97075 1.21458 0.96269 1.01297 0.95081 1.19452 0.93444 0.97008 0.94814 1.21498 0.92309 1.50510 0.93005 0.95151 1.26088 1.00832 0.94088 0.98626 1.70081 1.14910 1.52604 1.21712 0.85610 0.77650 0.79274 0.79830 1.19046 1.21229 1.16553 1.20550 0.91656 1.10241 0.98592 0.93424 0.93722 0.89770 0.86777 0.86362 0.74904 0.91806 0.90851 0.84791 0.84055 0.86040 0.76266 0.92322 0.91997 0.92624 0.92821 0.95776 0.95771 0.92522 0.85861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.20 71.98 0.66 -0.97 16 2 C -0.14 -1.32 6.42 29.85 0.19 -1.12 16 3 C 0.50 8.83 7.83 87.66 0.69 9.51 16 4 O -0.59 -15.93 15.98 -3.04 -0.05 -15.98 16 5 N -0.72 -10.29 5.55 -466.79 -2.59 -12.88 16 6 C 0.17 2.85 5.80 85.63 0.50 3.35 16 7 C -0.06 -1.08 5.25 -19.88 -0.10 -1.18 16 8 C -0.17 -2.75 9.70 22.29 0.22 -2.53 16 9 C -0.07 -1.28 10.04 22.25 0.22 -1.05 16 10 C -0.21 -4.49 9.31 22.40 0.21 -4.28 16 11 C 0.21 4.76 6.65 38.21 0.25 5.01 16 12 N -0.75 -18.44 5.73 -339.41 -1.95 -20.39 16 13 C 0.13 3.77 4.91 86.38 0.42 4.20 16 14 C -0.10 -3.68 5.27 30.60 0.16 -3.52 16 15 C -0.01 -0.41 4.04 29.85 0.12 -0.29 16 16 C -0.54 -30.33 9.66 25.60 0.25 -30.08 16 17 H 0.03 1.90 7.99 -2.91 -0.02 1.88 16 18 C 0.00 0.01 5.47 84.65 0.46 0.48 16 19 N -0.95 -59.46 13.96 21.45 0.30 -59.16 16 20 Si 0.95 43.18 27.47 68.60 1.88 45.06 16 21 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 22 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 23 H -0.24 -9.99 6.54 99.48 0.65 -9.34 16 24 C -0.19 -3.80 9.55 22.40 0.21 -3.59 16 25 H 0.05 0.69 8.10 -2.39 -0.02 0.67 16 26 H 0.04 0.68 8.10 -2.38 -0.02 0.66 16 27 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.41 4.11 8.46 -92.71 -0.78 3.33 16 31 H 0.06 1.24 8.08 -2.38 -0.02 1.22 16 32 H 0.07 1.30 8.08 -2.39 -0.02 1.28 16 33 H 0.13 1.72 8.06 -2.91 -0.02 1.70 16 34 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 35 H 0.12 2.63 6.73 -2.91 -0.02 2.61 16 36 H 0.40 9.28 8.49 -92.71 -0.79 8.49 16 37 H 0.06 1.63 7.95 -2.39 -0.02 1.61 16 38 H 0.06 1.68 7.95 -2.38 -0.02 1.66 16 39 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 41 H 0.02 1.04 7.20 -2.39 -0.02 1.02 16 42 H 0.02 1.02 7.57 -2.38 -0.02 1.00 16 43 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 44 H 0.12 2.34 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -71.46 366.44 1.43 -70.04 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -0.64 Total: 19.38 kcal Atomic # 6 Polarization: -30.54 SS G_CDS: 4.47 Total: -26.08 kcal Atomic # 7 Polarization: -88.19 SS G_CDS: -4.24 Total: -92.43 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.05 Total: -15.98 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 1.88 Total: 45.06 kcal Total: -71.46 1.43 -70.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168429531.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.159 kcal (2) G-P(sol) polarization free energy of solvation -71.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds