Wall clock time and date at job start Tue Mar 31 2020 08:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09009 * 109.47127 * 2 1 4 4 N 1.46500 * 109.47013 * 119.99589 * 2 1 3 5 5 C 1.39676 * 120.00062 * 274.99722 * 4 2 1 6 6 C 1.38906 * 120.07171 * 179.97438 * 5 4 2 7 7 C 1.38111 * 119.92343 * 179.97438 * 6 5 4 8 8 C 1.38288 * 120.07382 * 0.28047 * 7 6 5 9 9 C 1.50698 * 119.92407 * 179.69843 * 8 7 6 10 10 C 1.50695 * 109.47077 * 90.00107 * 9 8 7 11 11 H 1.08001 * 119.99903 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00403 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99758 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00253 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47046 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.46895 * 119.99964 * 14 12 10 17 17 H 1.48502 * 109.47138 * 239.99653 * 14 12 10 18 18 C 1.38286 * 120.14755 * 359.44532 * 8 7 6 19 19 C 1.38112 * 120.07587 * 0.55318 * 18 8 7 20 20 C 1.52998 * 109.47081 * 239.99684 * 2 1 3 21 21 H 1.09001 * 109.50600 * 184.99426 * 20 2 1 22 22 C 1.53100 * 109.50452 * 64.91774 * 20 2 1 23 23 N 1.47015 * 109.25779 * 183.21693 * 22 20 2 24 24 C 1.47015 * 110.75145 * 58.61019 * 23 22 20 25 25 C 1.53094 * 109.26233 * 301.38418 * 24 23 22 26 26 O 1.43009 * 109.51127 * 305.08813 * 20 2 1 27 27 H 1.09005 * 109.46686 * 59.99762 * 1 2 3 28 28 H 1.08996 * 109.46904 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47122 * 300.00628 * 1 2 3 30 30 H 0.96994 * 119.99675 * 95.00150 * 4 2 1 31 31 H 1.07999 * 120.03932 * 0.02562 * 6 5 4 32 32 H 1.08002 * 119.96028 * 179.97438 * 7 6 5 33 33 H 1.09001 * 109.46776 * 210.00059 * 9 8 7 34 34 H 1.09003 * 109.47041 * 330.00009 * 9 8 7 35 35 H 0.96990 * 120.00273 * 179.97438 * 13 12 10 36 36 H 1.08002 * 119.96005 * 180.25011 * 18 8 7 37 37 H 1.07998 * 120.03682 * 179.74419 * 19 18 8 38 38 H 1.09004 * 109.50682 * 303.14328 * 22 20 2 39 39 H 1.08995 * 109.51267 * 63.28163 * 22 20 2 40 40 H 1.00908 * 110.99779 * 294.83802 * 23 22 20 41 41 H 1.08999 * 109.50774 * 61.32665 * 24 23 22 42 42 H 1.09009 * 109.50726 * 181.40736 * 24 23 22 43 43 H 1.08994 * 109.51146 * 176.78500 * 25 24 23 44 44 H 1.09008 * 109.50598 * 296.87526 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1518 0.0064 2.3993 6 6 2.6141 -0.6470 3.5346 7 6 2.7454 0.0451 4.7225 8 6 2.4116 1.3857 4.7839 9 6 2.5497 2.1360 6.0835 10 6 3.9300 2.7340 6.1741 11 1 4.6364 2.5859 5.3707 12 6 4.2907 3.4711 7.2821 13 7 3.4300 3.6527 8.2597 14 14 6.0015 4.2129 7.3939 15 1 6.7723 3.8657 6.1731 16 1 5.8940 5.6895 7.5090 17 1 6.6981 3.6727 8.5890 18 6 1.9564 2.0406 3.6542 19 6 1.8228 1.3544 2.4631 20 6 2.0400 -0.7213 -1.2492 21 1 3.1263 -0.7998 -1.2062 22 6 1.6336 0.0676 -2.4967 23 7 2.0587 -0.6688 -3.6960 24 6 1.4530 -2.0080 -3.7268 25 6 1.8612 -2.7761 -2.4670 26 8 1.4687 -2.0308 -1.3113 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 2.2490 -1.6316 1.1527 31 1 2.8714 -1.6949 3.4882 32 1 3.1044 -0.4624 5.6056 33 1 1.8057 2.9315 6.1246 34 1 2.3953 1.4506 6.9169 35 1 3.6838 4.1708 9.0394 36 1 1.7005 3.0886 3.7047 37 1 1.4633 1.8655 1.5822 38 1 0.5509 0.1930 -2.5114 39 1 2.1138 1.0460 -2.4812 40 1 3.0648 -0.7258 -3.7477 41 1 0.3674 -1.9158 -3.7612 42 1 1.8007 -2.5446 -4.6097 43 1 1.3686 -3.7484 -2.4578 44 1 2.9423 -2.9157 -2.4602 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170566882.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:46 Heat of formation + Delta-G solvation = -23.840061 kcal Electronic energy + Delta-G solvation = -22726.923150 eV Core-core repulsion = 19450.452069 eV Total energy + Delta-G solvation = -3276.471081 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.31410 -38.80979 -36.24837 -34.87184 -33.41922 -32.25198 -30.35765 -30.02023 -28.98846 -26.53349 -26.12455 -24.51105 -22.97090 -22.56116 -21.73377 -20.50284 -19.81712 -17.24745 -16.87766 -16.55104 -16.21717 -16.01688 -15.61329 -15.21036 -14.90504 -14.50123 -14.07420 -13.79753 -13.40238 -13.31587 -13.12149 -12.72984 -12.55305 -12.50790 -12.28341 -11.99589 -11.73381 -11.62428 -11.43468 -11.19121 -11.17052 -11.09562 -10.63177 -10.50157 -10.48353 -10.05108 -9.75608 -9.38125 -8.99401 -8.71060 -8.35706 -8.19082 -6.71602 -5.95341 -3.99783 2.16661 2.41184 3.27094 3.32944 3.40381 3.45792 3.56955 3.71828 4.35615 4.45017 4.46726 4.59839 4.64673 4.71482 4.77998 4.88803 5.00831 5.14161 5.24246 5.34133 5.37213 5.43420 5.52937 5.58061 5.61000 5.70421 5.85654 6.10132 6.16473 6.26148 6.34307 6.37216 6.49952 6.72775 6.76096 6.77371 6.90711 7.34703 7.34882 7.49276 7.65431 7.90579 8.00252 8.01869 8.12411 8.43913 9.06440 9.63572 11.12956 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.032138 B = 0.002758 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.036067 B =10148.057905 C =10355.564990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.168 3.832 3 H 0.088 0.912 4 N -0.749 5.749 5 C 0.184 3.816 6 C -0.194 4.194 7 C -0.079 4.079 8 C -0.085 4.085 9 C 0.053 3.947 10 C -0.506 4.506 11 H 0.056 0.944 12 C 0.055 3.945 13 N -0.896 5.896 14 Si 0.892 3.108 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.080 4.080 19 C -0.198 4.198 20 C 0.046 3.954 21 H 0.063 0.937 22 C 0.026 3.974 23 N -0.682 5.682 24 C 0.020 3.980 25 C 0.021 3.979 26 O -0.369 6.369 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.396 0.604 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.025 0.975 34 H 0.025 0.975 35 H 0.260 0.740 36 H 0.115 0.885 37 H 0.109 0.891 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.341 0.659 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.099 0.901 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.496 -11.357 -23.412 26.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.061 3.939 3 H 0.106 0.894 4 N -0.381 5.381 5 C 0.084 3.916 6 C -0.216 4.216 7 C -0.098 4.098 8 C -0.087 4.087 9 C 0.016 3.984 10 C -0.545 4.545 11 H 0.075 0.925 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.720 3.280 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.099 4.099 19 C -0.220 4.220 20 C -0.014 4.014 21 H 0.081 0.919 22 C -0.104 4.104 23 N -0.310 5.310 24 C -0.110 4.110 25 C -0.057 4.057 26 O -0.288 6.288 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.230 0.770 31 H 0.125 0.875 32 H 0.134 0.866 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.070 0.930 36 H 0.133 0.867 37 H 0.127 0.873 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.159 0.841 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.117 0.883 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.188 -10.914 -23.659 26.567 hybrid contribution 1.789 -0.359 0.620 1.928 sum -3.398 -11.273 -23.039 25.874 Atomic orbital electron populations 1.22259 0.95575 1.02845 1.01796 1.20708 0.94377 0.95858 0.82926 0.89378 1.44406 1.75161 1.11945 1.06630 1.17608 0.96796 0.91524 0.85649 1.20457 1.09141 0.99250 0.92750 1.20829 0.98059 0.94407 0.96495 1.20448 0.96897 0.93615 0.97696 1.18249 0.97202 0.94569 0.88410 1.21175 0.98012 1.31677 1.03608 0.92536 1.25027 0.97251 0.96463 0.95786 1.69971 1.34690 1.40760 1.08148 0.86521 0.84586 0.78870 0.77980 1.19726 1.21024 1.21038 1.20843 0.98091 0.99127 0.91819 1.20523 1.09954 0.92988 0.98514 1.23146 0.97290 0.84522 0.96449 0.91948 1.22748 1.03071 0.97490 0.87100 1.60878 1.14123 1.16841 1.39190 1.22683 1.01454 0.89349 0.97529 1.23276 0.99585 0.96068 0.86795 1.88098 1.71457 1.26420 1.42802 0.92343 0.91711 0.91914 0.76983 0.87517 0.86648 0.95698 0.95714 0.93034 0.86677 0.87327 0.89147 0.89248 0.84133 0.89784 0.89626 0.88287 0.93275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 8.99 37.16 0.33 -1.40 16 2 C 0.17 1.79 2.14 -67.93 -0.15 1.64 16 3 H 0.09 0.95 6.48 -51.92 -0.34 0.61 16 4 N -0.75 -9.72 5.23 -52.16 -0.27 -10.00 16 5 C 0.18 3.00 6.64 -83.79 -0.56 2.45 16 6 C -0.19 -3.38 9.90 -39.38 -0.39 -3.77 16 7 C -0.08 -1.61 9.69 -39.61 -0.38 -1.99 16 8 C -0.08 -1.91 5.07 -104.59 -0.53 -2.44 16 9 C 0.05 1.39 5.10 -29.04 -0.15 1.24 16 10 C -0.51 -14.49 9.09 -34.44 -0.31 -14.81 16 11 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 13 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 14 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 15 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 C -0.08 -1.61 9.69 -39.61 -0.38 -1.99 16 19 C -0.20 -3.39 8.85 -39.38 -0.35 -3.74 16 20 C 0.05 0.41 2.63 -26.68 -0.07 0.34 16 21 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 22 C 0.03 0.20 5.87 -3.71 -0.02 0.18 16 23 N -0.68 -4.79 6.93 -113.49 -0.79 -5.58 16 24 C 0.02 0.12 6.76 -3.71 -0.03 0.10 16 25 C 0.02 0.14 7.00 37.21 0.26 0.41 16 26 O -0.37 -3.51 9.33 -35.23 -0.33 -3.84 16 27 H 0.06 0.51 6.50 -51.93 -0.34 0.17 16 28 H 0.06 0.74 7.56 -51.93 -0.39 0.34 16 29 H 0.06 0.74 7.72 -51.93 -0.40 0.34 16 30 H 0.40 4.89 8.40 -40.82 -0.34 4.55 16 31 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 32 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 33 H 0.02 0.69 8.09 -51.93 -0.42 0.27 16 34 H 0.02 0.68 8.08 -51.93 -0.42 0.26 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 37 H 0.11 1.59 6.12 -52.49 -0.32 1.27 16 38 H 0.09 0.72 6.43 -51.93 -0.33 0.39 16 39 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.34 2.04 8.89 -39.29 -0.35 1.69 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.09 0.40 8.14 -51.92 -0.42 -0.03 16 43 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.05 0.31 8.14 -51.92 -0.42 -0.11 16 LS Contribution 351.87 15.07 5.30 5.30 Total: -1.00 -31.22 351.87 -10.19 -41.41 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -7.00 Total: 4.36 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: -2.82 Total: -22.29 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: -0.32 Total: -41.80 kcal Atomic # 8 Polarization: -3.51 SS G_CDS: -0.33 Total: -3.84 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.22 -10.19 -41.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170566882.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.568 kcal (2) G-P(sol) polarization free energy of solvation -31.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds