Wall clock time and date at job start Tue Mar 31 2020 08:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09009 * 109.47127 * 2 1 4 4 N 1.46500 * 109.47013 * 119.99589 * 2 1 3 5 5 C 1.39676 * 120.00062 * 274.99722 * 4 2 1 6 6 C 1.38906 * 120.07171 * 179.97438 * 5 4 2 7 7 C 1.38111 * 119.92343 * 179.97438 * 6 5 4 8 8 C 1.38288 * 120.07382 * 0.28047 * 7 6 5 9 9 C 1.50698 * 119.92407 * 179.69843 * 8 7 6 10 10 C 1.50695 * 109.47077 * 90.00107 * 9 8 7 11 11 H 1.08001 * 119.99903 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00403 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99758 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00253 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47046 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.46895 * 119.99964 * 14 12 10 17 17 H 1.48502 * 109.47138 * 239.99653 * 14 12 10 18 18 C 1.38286 * 120.14755 * 359.44532 * 8 7 6 19 19 C 1.38112 * 120.07587 * 0.55318 * 18 8 7 20 20 C 1.52998 * 109.47081 * 239.99684 * 2 1 3 21 21 H 1.09001 * 109.50600 * 184.99426 * 20 2 1 22 22 C 1.53100 * 109.50452 * 64.91774 * 20 2 1 23 23 N 1.47015 * 109.25779 * 183.21693 * 22 20 2 24 24 C 1.47015 * 110.75145 * 58.61019 * 23 22 20 25 25 C 1.53094 * 109.26233 * 301.38418 * 24 23 22 26 26 O 1.43009 * 109.51127 * 305.08813 * 20 2 1 27 27 H 1.09005 * 109.46686 * 59.99762 * 1 2 3 28 28 H 1.08996 * 109.46904 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47122 * 300.00628 * 1 2 3 30 30 H 0.96994 * 119.99675 * 95.00150 * 4 2 1 31 31 H 1.07999 * 120.03932 * 0.02562 * 6 5 4 32 32 H 1.08002 * 119.96028 * 179.97438 * 7 6 5 33 33 H 1.09001 * 109.46776 * 210.00059 * 9 8 7 34 34 H 1.09003 * 109.47041 * 330.00009 * 9 8 7 35 35 H 0.96990 * 120.00273 * 179.97438 * 13 12 10 36 36 H 1.08002 * 119.96005 * 180.25011 * 18 8 7 37 37 H 1.07998 * 120.03682 * 179.74419 * 19 18 8 38 38 H 1.09004 * 109.50682 * 303.14328 * 22 20 2 39 39 H 1.08995 * 109.51267 * 63.28163 * 22 20 2 40 40 H 1.00908 * 110.99779 * 294.83802 * 23 22 20 41 41 H 1.08999 * 109.50774 * 61.32665 * 24 23 22 42 42 H 1.09009 * 109.50726 * 181.40736 * 24 23 22 43 43 H 1.08994 * 109.51146 * 176.78500 * 25 24 23 44 44 H 1.09008 * 109.50598 * 296.87526 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1518 0.0064 2.3993 6 6 2.6141 -0.6470 3.5346 7 6 2.7454 0.0451 4.7225 8 6 2.4116 1.3857 4.7839 9 6 2.5497 2.1360 6.0835 10 6 3.9300 2.7340 6.1741 11 1 4.6364 2.5859 5.3707 12 6 4.2907 3.4711 7.2821 13 7 3.4300 3.6527 8.2597 14 14 6.0015 4.2129 7.3939 15 1 6.7723 3.8657 6.1731 16 1 5.8940 5.6895 7.5090 17 1 6.6981 3.6727 8.5890 18 6 1.9564 2.0406 3.6542 19 6 1.8228 1.3544 2.4631 20 6 2.0400 -0.7213 -1.2492 21 1 3.1263 -0.7998 -1.2062 22 6 1.6336 0.0676 -2.4967 23 7 2.0587 -0.6688 -3.6960 24 6 1.4530 -2.0080 -3.7268 25 6 1.8612 -2.7761 -2.4670 26 8 1.4687 -2.0308 -1.3113 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 2.2490 -1.6316 1.1527 31 1 2.8714 -1.6949 3.4882 32 1 3.1044 -0.4624 5.6056 33 1 1.8057 2.9315 6.1246 34 1 2.3953 1.4506 6.9169 35 1 3.6838 4.1708 9.0394 36 1 1.7005 3.0886 3.7047 37 1 1.4633 1.8655 1.5822 38 1 0.5509 0.1930 -2.5114 39 1 2.1138 1.0460 -2.4812 40 1 3.0648 -0.7258 -3.7477 41 1 0.3674 -1.9158 -3.7612 42 1 1.8007 -2.5446 -4.6097 43 1 1.3686 -3.7484 -2.4578 44 1 2.9423 -2.9157 -2.4602 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170566882.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:44 Heat of formation + Delta-G solvation = -44.807762 kcal Electronic energy + Delta-G solvation = -22727.832378 eV Core-core repulsion = 19450.452069 eV Total energy + Delta-G solvation = -3277.380309 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -41.04409 -40.12345 -37.39151 -35.48621 -35.23307 -33.63810 -31.67819 -31.48951 -30.06055 -27.92862 -27.07934 -25.43282 -24.51192 -23.87631 -22.66871 -21.63037 -21.06212 -18.50029 -18.31928 -17.60525 -17.27626 -16.85639 -16.70851 -16.23659 -15.92147 -15.79961 -15.45704 -14.94416 -14.61417 -14.47809 -14.35521 -14.12439 -13.79854 -13.55250 -13.47626 -13.19049 -13.10094 -12.82711 -12.57377 -12.47682 -12.39722 -12.19860 -12.03589 -11.92322 -11.60289 -11.56223 -11.34820 -11.13937 -10.58583 -10.57539 -9.67650 -9.27747 -8.29844 -7.94905 -6.29688 0.67822 0.89634 1.39949 1.40063 1.54143 2.41850 2.47389 2.70427 3.13077 3.16447 3.19773 3.73872 3.77753 3.93125 4.07463 4.14459 4.20428 4.24073 4.34535 4.38697 4.43599 4.52269 4.61385 4.69591 4.77692 4.78213 4.81955 4.94653 4.95577 5.03089 5.14087 5.20198 5.38510 5.40462 5.40807 5.56278 5.71073 5.81933 5.82669 6.03687 6.13427 6.24150 6.26055 6.31370 6.60014 6.83966 6.94446 7.38624 8.92702 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.032138 B = 0.002758 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.036067 B =10148.057905 C =10355.564990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.162 3.838 3 H 0.093 0.907 4 N -0.737 5.737 5 C 0.201 3.799 6 C -0.193 4.193 7 C -0.089 4.089 8 C -0.123 4.123 9 C 0.063 3.937 10 C -0.523 4.523 11 H 0.052 0.948 12 C 0.000 4.000 13 N -0.933 5.933 14 Si 0.966 3.034 15 H -0.265 1.265 16 H -0.276 1.276 17 H -0.276 1.276 18 C -0.088 4.088 19 C -0.193 4.193 20 C 0.055 3.945 21 H 0.062 0.938 22 C 0.030 3.970 23 N -0.687 5.687 24 C 0.023 3.977 25 C 0.019 3.981 26 O -0.388 6.388 27 H 0.078 0.922 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.402 0.598 31 H 0.134 0.866 32 H 0.109 0.891 33 H -0.002 1.002 34 H -0.003 1.003 35 H 0.264 0.736 36 H 0.111 0.889 37 H 0.137 0.863 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.348 0.652 41 H 0.077 0.923 42 H 0.103 0.897 43 H 0.109 0.891 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.578 -12.120 -26.323 29.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.057 3.943 3 H 0.111 0.889 4 N -0.368 5.368 5 C 0.098 3.902 6 C -0.216 4.216 7 C -0.108 4.108 8 C -0.125 4.125 9 C 0.026 3.974 10 C -0.561 4.561 11 H 0.071 0.929 12 C -0.197 4.197 13 N -0.573 5.573 14 Si 0.790 3.210 15 H -0.189 1.189 16 H -0.201 1.201 17 H -0.202 1.202 18 C -0.107 4.107 19 C -0.215 4.215 20 C -0.005 4.005 21 H 0.080 0.920 22 C -0.100 4.100 23 N -0.316 5.316 24 C -0.107 4.107 25 C -0.059 4.059 26 O -0.308 6.308 27 H 0.097 0.903 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.237 0.763 31 H 0.152 0.848 32 H 0.127 0.873 33 H 0.016 0.984 34 H 0.015 0.985 35 H 0.073 0.927 36 H 0.129 0.871 37 H 0.155 0.845 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.166 0.834 41 H 0.095 0.905 42 H 0.121 0.879 43 H 0.127 0.873 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.277 -11.706 -26.618 29.391 hybrid contribution 1.427 -0.230 1.385 2.002 sum -2.850 -11.936 -25.234 28.059 Atomic orbital electron populations 1.22182 0.95215 1.02323 1.02076 1.20916 0.94561 0.96201 0.82661 0.88935 1.44512 1.73945 1.12215 1.06154 1.17680 0.94628 0.91335 0.86512 1.20639 1.08630 1.00388 0.91911 1.20816 0.98532 0.93732 0.97691 1.20131 1.01054 0.94685 0.96633 1.17985 0.95762 0.93500 0.90160 1.21473 0.98897 1.32066 1.03701 0.92929 1.25967 1.01696 0.96801 0.95259 1.70098 1.36941 1.41501 1.08802 0.85385 0.79172 0.78136 0.78286 1.18942 1.20103 1.20200 1.20846 0.98351 0.99185 0.92322 1.20689 1.09248 0.93367 0.98206 1.23016 0.96988 0.84603 0.95919 0.92048 1.22705 1.02917 0.97751 0.86623 1.60888 1.14748 1.17322 1.38658 1.22690 1.01033 0.89040 0.97934 1.23424 1.00070 0.96266 0.86148 1.88064 1.71821 1.26718 1.44167 0.90330 0.92596 0.93392 0.76258 0.84830 0.87273 0.98393 0.98512 0.92675 0.87116 0.84490 0.89515 0.88403 0.83384 0.90485 0.87914 0.87277 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 8.99 71.98 0.65 -2.31 16 2 C 0.16 3.00 2.14 44.99 0.10 3.10 16 3 H 0.09 1.69 6.48 -2.38 -0.02 1.67 16 4 N -0.74 -17.12 5.23 -318.95 -1.67 -18.79 16 5 C 0.20 6.15 6.64 38.21 0.25 6.41 16 6 C -0.19 -6.49 9.90 22.40 0.22 -6.27 16 7 C -0.09 -3.68 9.69 22.25 0.22 -3.46 16 8 C -0.12 -5.75 5.07 -19.84 -0.10 -5.85 16 9 C 0.06 3.54 5.10 29.10 0.15 3.69 16 10 C -0.52 -31.04 9.09 25.60 0.23 -30.81 16 11 H 0.05 3.08 7.74 -2.91 -0.02 3.06 16 12 C 0.00 0.01 5.46 84.65 0.46 0.48 16 13 N -0.93 -57.85 13.29 21.45 0.28 -57.56 16 14 Si 0.97 45.43 29.54 68.60 2.03 47.46 16 15 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 16 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 17 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 18 C -0.09 -3.60 9.69 22.25 0.22 -3.39 16 19 C -0.19 -6.33 8.85 22.40 0.20 -6.13 16 20 C 0.05 0.82 2.63 30.63 0.08 0.90 16 21 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 22 C 0.03 0.37 5.87 86.31 0.51 0.88 16 23 N -0.69 -7.78 6.93 -512.98 -3.55 -11.34 16 24 C 0.02 0.22 6.76 86.31 0.58 0.80 16 25 C 0.02 0.21 7.00 72.01 0.50 0.71 16 26 O -0.39 -6.40 9.33 -148.98 -1.39 -7.79 16 27 H 0.08 1.14 6.50 -2.38 -0.02 1.13 16 28 H 0.05 1.15 7.56 -2.39 -0.02 1.13 16 29 H 0.05 1.04 7.72 -2.39 -0.02 1.02 16 30 H 0.40 8.72 8.40 -92.71 -0.78 7.94 16 31 H 0.13 3.72 8.06 -2.91 -0.02 3.69 16 32 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 33 H 0.00 -0.13 8.09 -2.39 -0.02 -0.15 16 34 H 0.00 -0.21 8.08 -2.39 -0.02 -0.23 16 35 H 0.26 15.28 8.31 -92.72 -0.77 14.51 16 36 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 37 H 0.14 3.67 6.12 -2.91 -0.02 3.65 16 38 H 0.09 1.14 6.43 -2.38 -0.02 1.13 16 39 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.35 3.19 8.89 -89.69 -0.80 2.39 16 41 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 43 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 Total: -1.00 -68.91 351.87 -0.61 -69.52 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -0.57 Total: 19.75 kcal Atomic # 6 Polarization: -45.52 SS G_CDS: 4.27 Total: -41.25 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -4.94 Total: -87.69 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -1.39 Total: -7.79 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -68.91 -0.61 -69.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170566882.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.712 kcal (2) G-P(sol) polarization free energy of solvation -68.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds