Wall clock time and date at job start Tue Mar 31 2020 08:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46973 * 2 1 4 4 N 1.46497 * 109.46992 * 240.00253 * 2 1 3 5 5 C 1.39675 * 120.00317 * 84.99861 * 4 2 1 6 6 C 1.38909 * 120.07322 * 359.72246 * 5 4 2 7 7 C 1.38108 * 119.92160 * 179.77049 * 6 5 4 8 8 C 1.38284 * 120.07369 * 0.50585 * 7 6 5 9 9 C 1.50703 * 119.92216 * 179.77116 * 8 7 6 10 10 C 1.50699 * 109.46801 * 269.98007 * 9 8 7 11 11 H 1.07998 * 120.00564 * 359.97438 * 10 9 8 12 12 C 1.37882 * 120.00238 * 180.02562 * 10 9 8 13 13 N 1.31507 * 120.00515 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 119.99682 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47308 * 89.99832 * 14 12 10 16 16 H 1.48490 * 109.47105 * 210.00364 * 14 12 10 17 17 H 1.48502 * 109.46816 * 330.00206 * 14 12 10 18 18 C 1.38277 * 120.15133 * 359.74642 * 8 7 6 19 19 C 1.38108 * 120.07953 * 359.97438 * 18 8 7 20 20 C 1.52998 * 109.46996 * 119.99649 * 2 1 3 21 21 H 1.08996 * 109.50982 * 299.91182 * 20 2 1 22 22 C 1.53106 * 109.50456 * 179.78230 * 20 2 1 23 23 N 1.47011 * 109.25649 * 183.21908 * 22 20 2 24 24 C 1.47104 * 110.77695 * 58.61855 * 23 22 20 25 25 C 1.53103 * 109.20909 * 301.40918 * 24 23 22 26 26 O 1.43012 * 109.29295 * 56.82966 * 25 24 23 27 27 H 1.09007 * 109.47354 * 300.00148 * 1 2 3 28 28 H 1.09000 * 109.47307 * 59.99689 * 1 2 3 29 29 H 1.09002 * 109.47668 * 180.02562 * 1 2 3 30 30 H 0.97003 * 119.99683 * 265.00116 * 4 2 1 31 31 H 1.08001 * 120.03935 * 0.02562 * 6 5 4 32 32 H 1.07998 * 119.95728 * 180.25645 * 7 6 5 33 33 H 1.09002 * 109.47234 * 29.97334 * 9 8 7 34 34 H 1.09000 * 109.47200 * 149.97835 * 9 8 7 35 35 H 0.96998 * 120.00515 * 179.97438 * 13 12 10 36 36 H 1.08003 * 119.96538 * 179.97438 * 18 8 7 37 37 H 1.07994 * 120.04103 * 180.02562 * 19 18 8 38 38 H 1.08998 * 109.50564 * 303.15147 * 22 20 2 39 39 H 1.08996 * 109.50436 * 63.28395 * 22 20 2 40 40 H 1.00896 * 111.00210 * 294.83969 * 23 22 20 41 41 H 1.09004 * 109.56899 * 181.46911 * 24 23 22 42 42 H 1.08998 * 109.49713 * 61.30711 * 24 23 22 43 43 H 1.09002 * 109.50635 * 296.87124 * 25 24 23 44 44 H 1.09003 * 109.50698 * 176.78735 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1516 0.0062 -2.3994 6 6 1.8163 1.3526 -2.4649 7 6 1.9538 2.0397 -3.6550 8 6 2.4150 1.3863 -4.7831 9 6 2.5589 2.1381 -6.0813 10 6 1.2726 2.0451 -6.8608 11 1 0.4348 1.4961 -6.4569 12 6 1.1655 2.6599 -8.0903 13 7 0.0432 2.5784 -8.7708 14 14 2.6148 3.6089 -8.7893 15 1 3.4613 2.6950 -9.5976 16 1 2.1158 4.7117 -9.6493 17 1 3.4193 4.1742 -7.6765 18 6 2.7447 0.0448 -4.7226 19 6 2.6150 -0.6470 -3.5344 20 6 2.0399 -0.7212 1.2493 21 1 1.6782 -0.2069 2.1396 22 6 3.5710 -0.7264 1.2473 23 7 4.0547 -1.4868 2.4088 24 6 3.5459 -2.8667 2.3777 25 6 2.0152 -2.8391 2.3678 26 8 1.5637 -2.0697 1.2500 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 2.2489 -1.6317 -1.1526 31 1 1.4522 1.8626 -1.5852 32 1 1.6972 3.0875 -3.7056 33 1 2.7823 3.1843 -5.8724 34 1 3.3699 1.7029 -6.6652 35 1 -0.0323 3.0113 -9.6356 36 1 3.1042 -0.4627 -5.6056 37 1 2.8732 -1.6946 -3.4877 38 1 3.9322 -1.1929 0.3308 39 1 3.9385 0.2982 1.3044 40 1 3.8031 -1.0282 3.2716 41 1 3.8945 -3.4043 3.2596 42 1 3.9067 -3.3673 1.4793 43 1 1.6533 -2.3866 3.2911 44 1 1.6333 -3.8569 2.2873 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170566888.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:59 Heat of formation + Delta-G solvation = -19.827832 kcal Electronic energy + Delta-G solvation = -22921.846706 eV Core-core repulsion = 19645.549608 eV Total energy + Delta-G solvation = -3276.297098 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.31861 -38.83705 -36.28587 -34.87550 -33.33751 -32.09292 -30.52535 -30.16729 -29.40301 -26.79309 -26.20564 -24.24890 -22.73683 -22.43958 -21.76592 -20.64660 -19.75068 -17.38347 -16.92224 -16.67563 -16.53872 -15.96608 -15.37064 -15.22632 -14.78672 -14.55112 -14.06646 -13.85854 -13.54090 -13.17853 -13.05031 -12.89914 -12.64440 -12.36241 -12.19265 -12.16836 -11.87247 -11.68643 -11.49827 -11.42310 -11.37354 -11.14518 -10.59049 -10.52121 -10.22906 -10.05560 -9.87034 -9.41265 -9.07449 -8.64970 -8.50869 -8.23691 -6.72122 -5.99758 -3.97542 2.12037 2.35372 3.24796 3.33756 3.41127 3.44938 3.64689 3.72479 4.27264 4.42832 4.48340 4.56950 4.62027 4.71536 4.75424 4.90746 5.08256 5.15098 5.25697 5.32576 5.36044 5.47057 5.53019 5.56593 5.63482 5.68366 5.84652 6.00650 6.12059 6.25910 6.28581 6.38045 6.42163 6.68023 6.71382 6.81643 6.84699 7.10801 7.13292 7.23600 7.46772 7.78017 7.78293 7.87053 8.09315 8.60282 9.07358 9.61529 11.13483 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.036911 B = 0.002905 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.395280 B = 9635.411762 C = 9848.173453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.168 3.832 3 H 0.089 0.911 4 N -0.745 5.745 5 C 0.189 3.811 6 C -0.197 4.197 7 C -0.077 4.077 8 C -0.082 4.082 9 C 0.020 3.980 10 C -0.509 4.509 11 H 0.073 0.927 12 C 0.066 3.934 13 N -0.903 5.903 14 Si 0.878 3.122 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.265 1.265 18 C -0.076 4.076 19 C -0.193 4.193 20 C 0.047 3.953 21 H 0.066 0.934 22 C 0.028 3.972 23 N -0.684 5.684 24 C 0.019 3.981 25 C 0.022 3.978 26 O -0.369 6.369 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.397 0.603 31 H 0.110 0.890 32 H 0.115 0.885 33 H 0.024 0.976 34 H 0.019 0.981 35 H 0.263 0.737 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.339 0.661 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.049 0.951 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.003 -8.583 25.248 27.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.061 3.939 3 H 0.106 0.894 4 N -0.378 5.378 5 C 0.089 3.911 6 C -0.219 4.219 7 C -0.096 4.096 8 C -0.083 4.083 9 C -0.017 4.017 10 C -0.547 4.547 11 H 0.091 0.909 12 C -0.135 4.135 13 N -0.543 5.543 14 Si 0.705 3.295 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.189 1.189 18 C -0.095 4.095 19 C -0.215 4.215 20 C -0.013 4.013 21 H 0.084 0.916 22 C -0.102 4.102 23 N -0.312 5.312 24 C -0.110 4.110 25 C -0.056 4.056 26 O -0.288 6.288 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.232 0.768 31 H 0.128 0.872 32 H 0.133 0.867 33 H 0.042 0.958 34 H 0.037 0.963 35 H 0.072 0.928 36 H 0.134 0.866 37 H 0.126 0.874 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.156 0.844 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.067 0.933 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.366 -8.630 24.777 26.998 hybrid contribution -0.256 0.303 0.005 0.397 sum 6.109 -8.327 24.782 26.848 Atomic orbital electron populations 1.22240 0.95570 1.02890 1.01903 1.20735 0.94223 0.95787 0.83137 0.89361 1.44392 1.74878 1.11996 1.06499 1.17613 0.96335 0.91462 0.85704 1.20506 1.09751 0.93111 0.98568 1.20803 0.97517 0.99526 0.91748 1.20024 0.98309 0.94086 0.95913 1.18700 0.97790 0.94848 0.90404 1.21030 0.98028 1.33377 1.02219 0.90912 1.25022 0.95687 0.96035 0.96727 1.69906 1.25681 1.44776 1.13890 0.86805 0.83264 0.80098 0.79339 1.20263 1.21405 1.18917 1.20793 0.98397 0.94072 0.96238 1.20445 1.09146 0.99256 0.92639 1.23173 0.95462 0.84021 0.98672 0.91639 1.22700 0.92441 0.99874 0.95183 1.60858 1.62045 1.02818 1.05444 1.22704 0.93229 0.91175 1.03936 1.23283 0.95739 0.97162 0.89465 1.88097 1.72357 1.22509 1.45826 0.92656 0.91653 0.91726 0.76785 0.87230 0.86651 0.95823 0.96260 0.92752 0.86591 0.87363 0.89124 0.89485 0.84368 0.89661 0.89758 0.93321 0.88286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.81 9.27 37.16 0.34 -1.47 16 2 C 0.17 1.73 2.11 -67.93 -0.14 1.58 16 3 H 0.09 0.89 6.50 -51.93 -0.34 0.55 16 4 N -0.74 -9.20 4.48 -52.17 -0.23 -9.43 16 5 C 0.19 2.96 6.64 -83.79 -0.56 2.41 16 6 C -0.20 -3.27 8.84 -39.38 -0.35 -3.62 16 7 C -0.08 -1.50 9.69 -39.61 -0.38 -1.89 16 8 C -0.08 -1.77 5.07 -104.59 -0.53 -2.30 16 9 C 0.02 0.49 4.17 -29.03 -0.12 0.36 16 10 C -0.51 -14.78 9.65 -34.44 -0.33 -15.11 16 11 H 0.07 2.32 7.98 -52.49 -0.42 1.90 16 12 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 13 N -0.90 -28.21 13.96 55.43 0.77 -27.44 16 14 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 17 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 18 C -0.08 -1.50 9.69 -39.61 -0.38 -1.88 16 19 C -0.19 -3.26 9.90 -39.38 -0.39 -3.65 16 20 C 0.05 0.40 2.55 -26.68 -0.07 0.33 16 21 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 22 C 0.03 0.23 5.93 -3.71 -0.02 0.21 16 23 N -0.68 -5.06 6.93 -113.42 -0.79 -5.84 16 24 C 0.02 0.13 6.77 -3.66 -0.02 0.10 16 25 C 0.02 0.15 7.00 37.21 0.26 0.41 16 26 O -0.37 -3.47 9.31 -35.23 -0.33 -3.80 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.82 7.68 -51.93 -0.40 0.42 16 29 H 0.06 0.76 7.68 -51.93 -0.40 0.36 16 30 H 0.40 4.74 7.99 -40.82 -0.33 4.41 16 31 H 0.11 1.55 6.10 -52.49 -0.32 1.23 16 32 H 0.12 2.17 8.06 -52.49 -0.42 1.74 16 33 H 0.02 0.57 7.14 -51.93 -0.37 0.20 16 34 H 0.02 0.46 7.51 -51.93 -0.39 0.07 16 35 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 36 H 0.12 2.20 8.06 -52.48 -0.42 1.78 16 37 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.09 0.92 7.35 -51.93 -0.38 0.53 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.34 1.99 8.89 -39.29 -0.35 1.64 16 41 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 349.94 15.07 5.27 5.27 Total: -1.00 -31.90 349.94 -9.85 -41.75 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -7.09 Total: 5.00 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: -2.80 Total: -22.65 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: -0.25 Total: -42.71 kcal Atomic # 8 Polarization: -3.47 SS G_CDS: -0.33 Total: -3.80 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.90 -9.85 -41.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170566888.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.921 kcal (2) G-P(sol) polarization free energy of solvation -31.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds