Wall clock time and date at job start Tue Mar 31 2020 08:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46973 * 2 1 4 4 N 1.46497 * 109.46992 * 240.00253 * 2 1 3 5 5 C 1.39675 * 120.00317 * 84.99861 * 4 2 1 6 6 C 1.38909 * 120.07322 * 359.72246 * 5 4 2 7 7 C 1.38108 * 119.92160 * 179.77049 * 6 5 4 8 8 C 1.38284 * 120.07369 * 0.50585 * 7 6 5 9 9 C 1.50703 * 119.92216 * 179.77116 * 8 7 6 10 10 C 1.50699 * 109.46801 * 269.98007 * 9 8 7 11 11 H 1.07998 * 120.00564 * 359.97438 * 10 9 8 12 12 C 1.37882 * 120.00238 * 180.02562 * 10 9 8 13 13 N 1.31507 * 120.00515 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 119.99682 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47308 * 89.99832 * 14 12 10 16 16 H 1.48490 * 109.47105 * 210.00364 * 14 12 10 17 17 H 1.48502 * 109.46816 * 330.00206 * 14 12 10 18 18 C 1.38277 * 120.15133 * 359.74642 * 8 7 6 19 19 C 1.38108 * 120.07953 * 359.97438 * 18 8 7 20 20 C 1.52998 * 109.46996 * 119.99649 * 2 1 3 21 21 H 1.08996 * 109.50982 * 299.91182 * 20 2 1 22 22 C 1.53106 * 109.50456 * 179.78230 * 20 2 1 23 23 N 1.47011 * 109.25649 * 183.21908 * 22 20 2 24 24 C 1.47104 * 110.77695 * 58.61855 * 23 22 20 25 25 C 1.53103 * 109.20909 * 301.40918 * 24 23 22 26 26 O 1.43012 * 109.29295 * 56.82966 * 25 24 23 27 27 H 1.09007 * 109.47354 * 300.00148 * 1 2 3 28 28 H 1.09000 * 109.47307 * 59.99689 * 1 2 3 29 29 H 1.09002 * 109.47668 * 180.02562 * 1 2 3 30 30 H 0.97003 * 119.99683 * 265.00116 * 4 2 1 31 31 H 1.08001 * 120.03935 * 0.02562 * 6 5 4 32 32 H 1.07998 * 119.95728 * 180.25645 * 7 6 5 33 33 H 1.09002 * 109.47234 * 29.97334 * 9 8 7 34 34 H 1.09000 * 109.47200 * 149.97835 * 9 8 7 35 35 H 0.96998 * 120.00515 * 179.97438 * 13 12 10 36 36 H 1.08003 * 119.96538 * 179.97438 * 18 8 7 37 37 H 1.07994 * 120.04103 * 180.02562 * 19 18 8 38 38 H 1.08998 * 109.50564 * 303.15147 * 22 20 2 39 39 H 1.08996 * 109.50436 * 63.28395 * 22 20 2 40 40 H 1.00896 * 111.00210 * 294.83969 * 23 22 20 41 41 H 1.09004 * 109.56899 * 181.46911 * 24 23 22 42 42 H 1.08998 * 109.49713 * 61.30711 * 24 23 22 43 43 H 1.09002 * 109.50635 * 296.87124 * 25 24 23 44 44 H 1.09003 * 109.50698 * 176.78735 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1516 0.0062 -2.3994 6 6 1.8163 1.3526 -2.4649 7 6 1.9538 2.0397 -3.6550 8 6 2.4150 1.3863 -4.7831 9 6 2.5589 2.1381 -6.0813 10 6 1.2726 2.0451 -6.8608 11 1 0.4348 1.4961 -6.4569 12 6 1.1655 2.6599 -8.0903 13 7 0.0432 2.5784 -8.7708 14 14 2.6148 3.6089 -8.7893 15 1 3.4613 2.6950 -9.5976 16 1 2.1158 4.7117 -9.6493 17 1 3.4193 4.1742 -7.6765 18 6 2.7447 0.0448 -4.7226 19 6 2.6150 -0.6470 -3.5344 20 6 2.0399 -0.7212 1.2493 21 1 1.6782 -0.2069 2.1396 22 6 3.5710 -0.7264 1.2473 23 7 4.0547 -1.4868 2.4088 24 6 3.5459 -2.8667 2.3777 25 6 2.0152 -2.8391 2.3678 26 8 1.5637 -2.0697 1.2500 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 2.2489 -1.6317 -1.1526 31 1 1.4522 1.8626 -1.5852 32 1 1.6972 3.0875 -3.7056 33 1 2.7823 3.1843 -5.8724 34 1 3.3699 1.7029 -6.6652 35 1 -0.0323 3.0113 -9.6356 36 1 3.1042 -0.4627 -5.6056 37 1 2.8732 -1.6946 -3.4877 38 1 3.9322 -1.1929 0.3308 39 1 3.9385 0.2982 1.3044 40 1 3.8031 -1.0282 3.2716 41 1 3.8945 -3.4043 3.2596 42 1 3.9067 -3.3673 1.4793 43 1 1.6533 -2.3866 3.2911 44 1 1.6333 -3.8569 2.2873 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170566888.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:58 Heat of formation + Delta-G solvation = -41.917357 kcal Electronic energy + Delta-G solvation = -22922.804580 eV Core-core repulsion = 19645.549608 eV Total energy + Delta-G solvation = -3277.254972 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.06202 -40.08641 -37.38953 -35.51336 -35.14955 -33.58654 -31.69106 -31.62878 -30.51474 -28.10396 -27.18436 -24.95226 -24.31354 -23.85032 -22.49306 -21.87227 -21.00534 -18.92243 -18.45959 -17.66442 -17.26206 -16.74919 -16.56572 -16.07499 -15.89473 -15.73114 -15.52846 -15.13109 -14.75575 -14.48486 -14.23016 -14.09689 -13.85179 -13.64511 -13.60263 -13.37756 -12.96865 -12.84462 -12.66981 -12.38473 -12.31940 -12.04429 -11.98057 -11.95653 -11.69934 -11.55472 -11.46464 -11.14179 -10.75914 -10.59370 -9.66598 -9.23055 -8.27529 -8.02706 -6.30798 0.68945 0.90064 1.37568 1.39395 1.52088 2.38045 2.48133 2.75689 3.07418 3.15044 3.18733 3.62298 3.77987 4.01540 4.07990 4.13659 4.19758 4.23669 4.36419 4.40386 4.47416 4.48013 4.60644 4.67885 4.76473 4.77060 4.83825 4.91965 4.95109 5.04344 5.06611 5.13184 5.18470 5.36687 5.37026 5.54468 5.62206 5.71883 5.82768 6.04753 6.15192 6.18180 6.33058 6.35731 6.60860 6.76234 6.95254 7.32496 8.90128 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.036911 B = 0.002905 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.395280 B = 9635.411762 C = 9848.173453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.163 3.837 3 H 0.097 0.903 4 N -0.732 5.732 5 C 0.204 3.796 6 C -0.195 4.195 7 C -0.088 4.088 8 C -0.124 4.124 9 C 0.028 3.972 10 C -0.516 4.516 11 H 0.024 0.976 12 C 0.003 3.997 13 N -0.953 5.953 14 Si 0.953 3.047 15 H -0.266 1.266 16 H -0.282 1.282 17 H -0.246 1.246 18 C -0.088 4.088 19 C -0.196 4.196 20 C 0.056 3.944 21 H 0.084 0.916 22 C 0.032 3.968 23 N -0.690 5.690 24 C 0.022 3.978 25 C 0.021 3.979 26 O -0.391 6.391 27 H 0.077 0.923 28 H 0.044 0.956 29 H 0.053 0.947 30 H 0.402 0.598 31 H 0.137 0.863 32 H 0.114 0.886 33 H 0.026 0.974 34 H 0.023 0.977 35 H 0.266 0.734 36 H 0.113 0.887 37 H 0.132 0.868 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.350 0.650 41 H 0.103 0.897 42 H 0.070 0.930 43 H 0.061 0.939 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.487 -8.704 27.880 30.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.057 3.943 3 H 0.115 0.885 4 N -0.363 5.363 5 C 0.102 3.898 6 C -0.218 4.218 7 C -0.106 4.106 8 C -0.125 4.125 9 C -0.009 4.009 10 C -0.554 4.554 11 H 0.043 0.957 12 C -0.193 4.193 13 N -0.594 5.594 14 Si 0.775 3.225 15 H -0.191 1.191 16 H -0.208 1.208 17 H -0.169 1.169 18 C -0.107 4.107 19 C -0.219 4.219 20 C -0.004 4.004 21 H 0.102 0.898 22 C -0.098 4.098 23 N -0.319 5.319 24 C -0.108 4.108 25 C -0.057 4.057 26 O -0.310 6.310 27 H 0.095 0.905 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.237 0.763 31 H 0.154 0.846 32 H 0.132 0.868 33 H 0.044 0.956 34 H 0.042 0.958 35 H 0.075 0.925 36 H 0.131 0.869 37 H 0.150 0.850 38 H 0.089 0.911 39 H 0.110 0.890 40 H 0.168 0.832 41 H 0.122 0.878 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.853 -8.778 27.470 29.889 hybrid contribution -0.815 0.198 -0.629 1.048 sum 7.038 -8.580 26.842 29.045 Atomic orbital electron populations 1.22182 0.95750 1.02191 1.01993 1.20942 0.93961 0.96392 0.82991 0.88533 1.44473 1.73639 1.12164 1.06057 1.17688 0.94286 0.91304 0.86528 1.20690 1.09183 0.93478 0.98421 1.20886 0.97652 0.99777 0.92306 1.19893 1.02088 0.95129 0.95430 1.18532 0.95280 0.95523 0.91615 1.21272 0.98678 1.32540 1.02929 0.95728 1.26028 0.98998 0.97198 0.97056 1.70068 1.28350 1.46335 1.14621 0.85621 0.79269 0.78600 0.78961 1.19061 1.20817 1.16928 1.20854 0.98853 0.93597 0.97368 1.20641 1.08874 1.00300 0.92063 1.23078 0.95379 0.83899 0.98048 0.89811 1.22592 0.92271 1.00039 0.94868 1.60835 1.62230 1.03213 1.05635 1.22704 0.93144 0.90763 1.04159 1.23417 0.95760 0.97393 0.89134 1.88065 1.72788 1.22957 1.47191 0.90453 0.93689 0.92783 0.76252 0.84572 0.86762 0.95581 0.95847 0.92470 0.86909 0.85030 0.91072 0.89020 0.83163 0.87835 0.91127 0.92039 0.87462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 9.27 71.98 0.67 -2.50 16 2 C 0.16 2.94 2.11 44.99 0.09 3.03 16 3 H 0.10 1.64 6.50 -2.38 -0.02 1.62 16 4 N -0.73 -16.59 4.48 -318.96 -1.43 -18.01 16 5 C 0.20 6.12 6.64 38.21 0.25 6.38 16 6 C -0.20 -6.25 8.84 22.40 0.20 -6.05 16 7 C -0.09 -3.42 9.69 22.25 0.22 -3.21 16 8 C -0.12 -5.46 5.07 -19.84 -0.10 -5.56 16 9 C 0.03 1.39 4.17 29.10 0.12 1.51 16 10 C -0.52 -31.22 9.65 25.60 0.25 -30.97 16 11 H 0.02 1.66 7.98 -2.91 -0.02 1.64 16 12 C 0.00 0.21 5.47 84.66 0.46 0.67 16 13 N -0.95 -61.50 13.96 21.45 0.30 -61.20 16 14 Si 0.95 45.36 27.47 68.60 1.88 47.24 16 15 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 16 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 17 H -0.25 -10.87 6.54 99.48 0.65 -10.22 16 18 C -0.09 -3.50 9.69 22.25 0.22 -3.28 16 19 C -0.20 -6.47 9.90 22.40 0.22 -6.25 16 20 C 0.06 0.79 2.55 30.63 0.08 0.86 16 21 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 22 C 0.03 0.46 5.93 86.32 0.51 0.97 16 23 N -0.69 -8.42 6.93 -512.76 -3.55 -11.98 16 24 C 0.02 0.23 6.77 86.30 0.58 0.81 16 25 C 0.02 0.22 7.00 72.02 0.50 0.73 16 26 O -0.39 -6.37 9.31 -148.98 -1.39 -7.76 16 27 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 28 H 0.04 1.06 7.68 -2.39 -0.02 1.04 16 29 H 0.05 1.17 7.68 -2.39 -0.02 1.15 16 30 H 0.40 8.76 7.99 -92.71 -0.74 8.02 16 31 H 0.14 3.55 6.10 -2.91 -0.02 3.54 16 32 H 0.11 4.36 8.06 -2.91 -0.02 4.33 16 33 H 0.03 1.27 7.14 -2.39 -0.02 1.25 16 34 H 0.02 1.13 7.51 -2.39 -0.02 1.11 16 35 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 36 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 37 H 0.13 3.64 8.06 -2.91 -0.02 3.62 16 38 H 0.07 1.30 7.35 -2.39 -0.02 1.29 16 39 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.35 3.03 8.89 -89.70 -0.80 2.23 16 41 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 42 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -71.39 349.94 -0.50 -71.89 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: -0.60 Total: 22.67 kcal Atomic # 6 Polarization: -47.13 SS G_CDS: 4.28 Total: -42.85 kcal Atomic # 7 Polarization: -86.51 SS G_CDS: -4.68 Total: -91.19 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -1.39 Total: -7.76 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.88 Total: 47.24 kcal Total: -71.39 -0.50 -71.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170566888.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.975 kcal (2) G-P(sol) polarization free energy of solvation -71.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds