Wall clock time and date at job start Tue Mar 31 2020 07:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21291 * 119.99917 * 2 1 4 4 N 1.34773 * 120.00348 * 179.97438 * 2 1 3 5 5 C 1.39927 * 120.00361 * 184.62127 * 4 2 1 6 6 C 1.38892 * 120.07035 * 324.90151 * 5 4 2 7 7 C 1.38087 * 119.92991 * 180.02562 * 6 5 4 8 8 C 1.38305 * 120.07096 * 359.72237 * 7 6 5 9 9 C 1.38265 * 120.13649 * 0.55262 * 8 7 6 10 10 C 1.50706 * 119.96163 * 179.72371 * 9 8 7 11 11 N 1.46903 * 109.46718 * 269.72423 * 10 9 8 12 12 C 1.46904 * 110.99849 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.47196 * 34.99908 * 12 11 10 14 14 C 1.53000 * 109.47103 * 275.00078 * 12 11 10 15 15 C 1.53000 * 109.47340 * 155.00003 * 12 11 10 16 16 C 1.53006 * 109.47032 * 295.00363 * 15 12 11 17 17 C 1.50696 * 109.46974 * 179.97438 * 16 15 12 18 18 H 1.07997 * 120.00040 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00065 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99859 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00327 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47163 * 89.99405 * 21 19 17 23 23 H 1.48502 * 109.47056 * 209.99862 * 21 19 17 24 24 H 1.48500 * 109.46575 * 329.99751 * 21 19 17 25 25 C 1.38122 * 120.07267 * 359.44823 * 9 8 7 26 26 H 1.09004 * 109.46625 * 239.99750 * 1 2 3 27 27 H 1.09000 * 109.47160 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.47005 * 119.99930 * 1 2 3 29 29 H 0.97000 * 119.99862 * 4.62800 * 4 2 1 30 30 H 1.08002 * 120.03270 * 359.97438 * 6 5 4 31 31 H 1.08006 * 119.96688 * 180.02562 * 7 6 5 32 32 H 1.07998 * 119.93346 * 180.26876 * 8 7 6 33 33 H 1.08994 * 109.47352 * 149.72777 * 10 9 8 34 34 H 1.09003 * 109.47117 * 29.72032 * 10 9 8 35 35 H 1.00897 * 111.00418 * 56.04856 * 11 10 9 36 36 H 1.09004 * 109.46995 * 179.97438 * 14 12 11 37 37 H 1.08995 * 109.47436 * 300.00050 * 14 12 11 38 38 H 1.09006 * 109.47299 * 60.00030 * 14 12 11 39 39 H 1.09001 * 109.46817 * 54.99958 * 15 12 11 40 40 H 1.08997 * 109.47401 * 175.00093 * 15 12 11 41 41 H 1.09001 * 109.46989 * 299.99489 * 16 15 12 42 42 H 1.08997 * 109.47248 * 59.99636 * 16 15 12 43 43 H 0.96996 * 120.00182 * 180.02562 * 20 19 17 44 44 H 1.08004 * 120.03956 * 180.25300 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5768 -1.1691 0.0982 6 6 4.3179 -0.1598 -0.5030 7 6 5.6953 -0.1649 -0.4053 8 6 6.3367 -1.1703 0.2952 9 6 5.6021 -2.1795 0.8899 10 6 6.3054 -3.2765 1.6469 11 7 6.6136 -4.3832 0.7314 12 6 7.3018 -5.4732 1.4360 13 1 6.9141 -5.5511 2.4517 14 6 8.8030 -5.1817 1.4840 15 6 7.0615 -6.7907 0.6961 16 6 5.5743 -7.1453 0.7559 17 6 5.3375 -8.4426 0.0266 18 1 6.1650 -8.9624 -0.4332 19 6 4.0645 -8.9660 -0.0537 20 7 3.0568 -8.3332 0.5067 21 14 3.7710 -10.5744 -0.9571 22 1 3.9092 -11.7078 -0.0076 23 1 2.4026 -10.5757 -1.5339 24 1 4.7682 -10.7183 -2.0481 25 6 4.2241 -2.1802 0.7958 26 1 -0.3633 -0.5139 0.8900 27 1 -0.3633 1.0277 0.0005 28 1 -0.3633 -0.5138 -0.8899 29 1 1.6983 -2.0059 -0.0669 30 1 3.8174 0.6276 -1.0470 31 1 6.2721 0.6198 -0.8722 32 1 7.4138 -1.1697 0.3739 33 1 5.6601 -3.6366 2.4480 34 1 7.2310 -2.8886 2.0725 35 1 7.1576 -4.0613 -0.0550 36 1 9.3135 -5.9903 2.0072 37 1 9.1907 -5.1039 0.4684 38 1 8.9742 -4.2431 2.0112 39 1 7.3680 -6.6840 -0.3445 40 1 7.6432 -7.5831 1.1668 41 1 5.2678 -7.2519 1.7965 42 1 4.9926 -6.3528 0.2852 43 1 2.1613 -8.7015 0.4506 44 1 3.6506 -2.9665 1.2641 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172477915.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:38 Heat of formation + Delta-G solvation = -28.291448 kcal Electronic energy + Delta-G solvation = -22417.011035 eV Core-core repulsion = 19140.346928 eV Total energy + Delta-G solvation = -3276.664108 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -40.55092 -38.75563 -37.03749 -34.92179 -33.39846 -32.26575 -30.91474 -30.13762 -28.88537 -28.35784 -25.33043 -24.58236 -22.54589 -22.04313 -21.29343 -20.15882 -19.67644 -17.62778 -16.89321 -16.18622 -16.10724 -15.75695 -15.20440 -14.90748 -14.68137 -14.37464 -14.04639 -13.57607 -13.51160 -13.08504 -12.86740 -12.75924 -12.68504 -12.36392 -12.26776 -12.06769 -11.80597 -11.67012 -11.38044 -11.17062 -10.98378 -10.80084 -10.44779 -10.37929 -10.19303 -9.92216 -9.63193 -9.20788 -8.90542 -8.69059 -8.23961 -8.13039 -7.84605 -5.89697 -3.90113 1.31582 1.48572 2.43090 2.97644 3.36043 3.42082 3.45924 3.83355 4.52496 4.53357 4.65958 4.92582 4.97648 5.01226 5.08992 5.23273 5.34999 5.37504 5.42917 5.46155 5.52632 5.56641 5.64367 5.69277 5.75650 5.87848 6.08462 6.10889 6.28000 6.35148 6.40090 6.42015 6.56160 6.67926 6.73569 6.90515 7.08981 7.28068 7.31589 7.50152 7.81727 7.84763 7.95130 8.08165 8.23220 8.57694 9.18849 9.72354 11.21443 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.012007 B = 0.003847 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.504763 B = 7277.045896 C = 9262.339933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.510 3.490 3 O -0.533 6.533 4 N -0.672 5.672 5 C 0.138 3.862 6 C -0.124 4.124 7 C -0.107 4.107 8 C -0.129 4.129 9 C -0.058 4.058 10 C 0.099 3.901 11 N -0.665 5.665 12 C 0.083 3.917 13 H 0.072 0.928 14 C -0.181 4.181 15 C -0.098 4.098 16 C 0.030 3.970 17 C -0.517 4.517 18 H 0.050 0.950 19 C 0.056 3.944 20 N -0.896 5.896 21 Si 0.886 3.114 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.275 1.275 25 C -0.115 4.115 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.415 0.585 30 H 0.134 0.866 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.080 0.920 34 H 0.033 0.967 35 H 0.336 0.664 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.044 0.956 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.006 0.994 42 H 0.033 0.967 43 H 0.257 0.743 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.870 16.606 0.705 16.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.299 3.701 3 O -0.409 6.409 4 N -0.318 5.318 5 C 0.044 3.956 6 C -0.144 4.144 7 C -0.126 4.126 8 C -0.148 4.148 9 C -0.059 4.059 10 C -0.030 4.030 11 N -0.295 5.295 12 C -0.026 4.026 13 H 0.090 0.910 14 C -0.240 4.240 15 C -0.136 4.136 16 C -0.007 4.007 17 C -0.555 4.555 18 H 0.069 0.931 19 C -0.144 4.144 20 N -0.536 5.536 21 Si 0.714 3.286 22 H -0.209 1.209 23 H -0.214 1.214 24 H -0.200 1.200 25 C -0.135 4.135 26 H 0.111 0.889 27 H 0.113 0.887 28 H 0.110 0.890 29 H 0.251 0.749 30 H 0.152 0.848 31 H 0.140 0.860 32 H 0.136 0.864 33 H 0.098 0.902 34 H 0.051 0.949 35 H 0.154 0.846 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.025 0.975 42 H 0.051 0.949 43 H 0.067 0.933 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.408 17.063 0.810 17.087 hybrid contribution 0.371 -1.049 -0.401 1.183 sum 0.779 16.014 0.409 16.038 Atomic orbital electron populations 1.21930 0.90798 1.05788 1.04803 1.20998 0.90894 0.83144 0.75101 1.90712 1.70581 1.31386 1.48260 1.43610 1.05459 1.10089 1.72610 1.17741 0.82360 0.97294 0.98201 1.21192 0.93774 0.99299 1.00122 1.20952 0.93964 0.98501 0.99191 1.21016 0.99550 0.94993 0.99272 1.19604 0.92999 0.95251 0.98024 1.20903 0.97827 0.89524 0.94750 1.60574 1.50725 1.08443 1.09779 1.21759 0.89844 0.92784 0.98215 0.90984 1.22544 0.98954 1.00962 1.01542 1.21628 1.01329 0.92405 0.98266 1.18992 0.89309 0.95977 0.96441 1.21367 0.93073 1.07147 1.33942 0.93140 1.24982 0.96367 0.97167 0.95862 1.69977 0.99523 1.38957 1.45140 0.86693 0.77351 0.84420 0.80091 1.20857 1.21356 1.20009 1.20869 0.94567 0.98725 0.99376 0.88931 0.88717 0.88975 0.74859 0.84814 0.86046 0.86417 0.90185 0.94916 0.84603 0.92245 0.92768 0.93723 0.93487 0.93532 0.97540 0.94899 0.93336 0.85127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 10.32 36.01 0.37 -0.78 16 2 C 0.51 5.71 7.78 -10.99 -0.09 5.63 16 3 O -0.53 -7.99 14.52 5.55 0.08 -7.91 16 4 N -0.67 -7.53 5.34 -9.86 -0.05 -7.58 16 5 C 0.14 1.88 6.30 -83.69 -0.53 1.36 16 6 C -0.12 -1.71 8.70 -39.39 -0.34 -2.05 16 7 C -0.11 -1.33 10.04 -39.61 -0.40 -1.73 16 8 C -0.13 -1.60 9.70 -39.55 -0.38 -1.98 16 9 C -0.06 -0.79 5.39 -104.65 -0.56 -1.35 16 10 C 0.10 1.36 5.61 -4.97 -0.03 1.34 16 11 N -0.66 -10.58 5.69 -107.99 -0.61 -11.19 16 12 C 0.08 1.37 2.59 -67.71 -0.18 1.20 16 13 H 0.07 1.23 7.80 -51.93 -0.41 0.82 16 14 C -0.18 -2.40 9.16 37.16 0.34 -2.06 16 15 C -0.10 -2.01 4.83 -26.73 -0.13 -2.14 16 16 C 0.03 0.78 4.86 -27.88 -0.14 0.64 16 17 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 18 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 21 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C -0.11 -1.62 9.62 -39.40 -0.38 -2.00 16 26 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.09 0.61 8.12 -51.93 -0.42 0.19 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.41 3.67 8.82 -40.82 -0.36 3.31 16 30 H 0.13 1.91 6.23 -52.49 -0.33 1.58 16 31 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 32 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 33 H 0.08 1.16 8.00 -51.93 -0.42 0.74 16 34 H 0.03 0.40 7.38 -51.93 -0.38 0.02 16 35 H 0.34 4.99 8.46 -39.29 -0.33 4.66 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.69 8.13 -51.93 -0.42 0.27 16 38 H 0.04 0.53 7.45 -51.93 -0.39 0.14 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 42 H 0.03 0.91 7.75 -51.93 -0.40 0.51 16 43 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 44 H 0.13 1.86 8.06 -52.48 -0.42 1.43 16 LS Contribution 366.38 15.07 5.52 5.52 Total: -1.00 -33.58 366.38 -9.40 -42.98 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -7.20 Total: 5.14 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -2.85 Total: -17.55 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: 0.07 Total: -45.02 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: 0.08 Total: -7.91 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.58 -9.40 -42.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172477915.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.685 kcal (2) G-P(sol) polarization free energy of solvation -33.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds