Wall clock time and date at job start Tue Mar 31 2020 07:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21291 * 119.99917 * 2 1 4 4 N 1.34773 * 120.00348 * 179.97438 * 2 1 3 5 5 C 1.39927 * 120.00361 * 184.62127 * 4 2 1 6 6 C 1.38892 * 120.07035 * 324.90151 * 5 4 2 7 7 C 1.38087 * 119.92991 * 180.02562 * 6 5 4 8 8 C 1.38305 * 120.07096 * 359.72237 * 7 6 5 9 9 C 1.38265 * 120.13649 * 0.55262 * 8 7 6 10 10 C 1.50706 * 119.96163 * 179.72371 * 9 8 7 11 11 N 1.46903 * 109.46718 * 269.72423 * 10 9 8 12 12 C 1.46904 * 110.99849 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.47196 * 34.99908 * 12 11 10 14 14 C 1.53000 * 109.47103 * 275.00078 * 12 11 10 15 15 C 1.53000 * 109.47340 * 155.00003 * 12 11 10 16 16 C 1.53006 * 109.47032 * 295.00363 * 15 12 11 17 17 C 1.50696 * 109.46974 * 179.97438 * 16 15 12 18 18 H 1.07997 * 120.00040 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00065 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99859 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00327 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47163 * 89.99405 * 21 19 17 23 23 H 1.48502 * 109.47056 * 209.99862 * 21 19 17 24 24 H 1.48500 * 109.46575 * 329.99751 * 21 19 17 25 25 C 1.38122 * 120.07267 * 359.44823 * 9 8 7 26 26 H 1.09004 * 109.46625 * 239.99750 * 1 2 3 27 27 H 1.09000 * 109.47160 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.47005 * 119.99930 * 1 2 3 29 29 H 0.97000 * 119.99862 * 4.62800 * 4 2 1 30 30 H 1.08002 * 120.03270 * 359.97438 * 6 5 4 31 31 H 1.08006 * 119.96688 * 180.02562 * 7 6 5 32 32 H 1.07998 * 119.93346 * 180.26876 * 8 7 6 33 33 H 1.08994 * 109.47352 * 149.72777 * 10 9 8 34 34 H 1.09003 * 109.47117 * 29.72032 * 10 9 8 35 35 H 1.00897 * 111.00418 * 56.04856 * 11 10 9 36 36 H 1.09004 * 109.46995 * 179.97438 * 14 12 11 37 37 H 1.08995 * 109.47436 * 300.00050 * 14 12 11 38 38 H 1.09006 * 109.47299 * 60.00030 * 14 12 11 39 39 H 1.09001 * 109.46817 * 54.99958 * 15 12 11 40 40 H 1.08997 * 109.47401 * 175.00093 * 15 12 11 41 41 H 1.09001 * 109.46989 * 299.99489 * 16 15 12 42 42 H 1.08997 * 109.47248 * 59.99636 * 16 15 12 43 43 H 0.96996 * 120.00182 * 180.02562 * 20 19 17 44 44 H 1.08004 * 120.03956 * 180.25300 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5768 -1.1691 0.0982 6 6 4.3179 -0.1598 -0.5030 7 6 5.6953 -0.1649 -0.4053 8 6 6.3367 -1.1703 0.2952 9 6 5.6021 -2.1795 0.8899 10 6 6.3054 -3.2765 1.6469 11 7 6.6136 -4.3832 0.7314 12 6 7.3018 -5.4732 1.4360 13 1 6.9141 -5.5511 2.4517 14 6 8.8030 -5.1817 1.4840 15 6 7.0615 -6.7907 0.6961 16 6 5.5743 -7.1453 0.7559 17 6 5.3375 -8.4426 0.0266 18 1 6.1650 -8.9624 -0.4332 19 6 4.0645 -8.9660 -0.0537 20 7 3.0568 -8.3332 0.5067 21 14 3.7710 -10.5744 -0.9571 22 1 3.9092 -11.7078 -0.0076 23 1 2.4026 -10.5757 -1.5339 24 1 4.7682 -10.7183 -2.0481 25 6 4.2241 -2.1802 0.7958 26 1 -0.3633 -0.5139 0.8900 27 1 -0.3633 1.0277 0.0005 28 1 -0.3633 -0.5138 -0.8899 29 1 1.6983 -2.0059 -0.0669 30 1 3.8174 0.6276 -1.0470 31 1 6.2721 0.6198 -0.8722 32 1 7.4138 -1.1697 0.3739 33 1 5.6601 -3.6366 2.4480 34 1 7.2310 -2.8886 2.0725 35 1 7.1576 -4.0613 -0.0550 36 1 9.3135 -5.9903 2.0072 37 1 9.1907 -5.1039 0.4684 38 1 8.9742 -4.2431 2.0112 39 1 7.3680 -6.6840 -0.3445 40 1 7.6432 -7.5831 1.1668 41 1 5.2678 -7.2519 1.7965 42 1 4.9926 -6.3528 0.2852 43 1 2.1613 -8.7015 0.4506 44 1 3.6506 -2.9665 1.2641 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172477915.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:34 Heat of formation + Delta-G solvation = -49.867666 kcal Electronic energy + Delta-G solvation = -22417.946651 eV Core-core repulsion = 19140.346928 eV Total energy + Delta-G solvation = -3277.599723 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 3.34 seconds Orbital eigenvalues (eV) -41.51377 -39.78766 -38.33223 -35.98432 -35.24979 -33.73932 -31.75218 -31.70621 -30.12559 -29.29924 -27.01386 -25.94637 -23.52623 -23.23801 -22.88548 -21.42670 -20.93206 -18.58598 -18.32878 -17.83439 -17.17969 -16.77076 -16.49441 -16.42941 -15.96417 -15.69345 -15.06505 -14.79703 -14.55288 -14.46379 -14.19193 -13.92850 -13.74257 -13.50964 -13.40091 -13.16594 -13.01566 -12.93805 -12.83150 -12.79456 -12.51441 -12.29900 -12.07832 -11.70244 -11.49698 -11.35789 -11.18527 -10.95308 -10.87945 -10.45836 -9.75734 -9.17153 -9.03907 -8.11640 -6.21298 0.30627 0.42610 1.41119 1.42243 1.53092 1.54738 2.12793 2.45244 2.79138 3.20621 3.48964 3.77506 3.87096 3.99046 4.10330 4.20877 4.34418 4.37940 4.44850 4.46374 4.50930 4.60450 4.62921 4.71323 4.78813 4.82126 5.02414 5.02812 5.08076 5.09742 5.13880 5.32349 5.36936 5.40240 5.50055 5.55400 5.61971 5.69672 5.91924 6.05992 6.08211 6.28861 6.37896 6.41202 6.65355 6.98225 7.07800 7.46384 8.99570 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.012007 B = 0.003847 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.504763 B = 7277.045896 C = 9262.339933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.504 3.496 3 O -0.576 6.576 4 N -0.669 5.669 5 C 0.127 3.873 6 C -0.140 4.140 7 C -0.105 4.105 8 C -0.126 4.126 9 C -0.066 4.066 10 C 0.106 3.894 11 N -0.685 5.685 12 C 0.091 3.909 13 H 0.062 0.938 14 C -0.169 4.169 15 C -0.089 4.089 16 C 0.040 3.960 17 C -0.543 4.543 18 H 0.053 0.947 19 C 0.001 3.999 20 N -0.930 5.930 21 Si 0.958 3.042 22 H -0.274 1.274 23 H -0.282 1.282 24 H -0.266 1.266 25 C -0.133 4.133 26 H 0.111 0.889 27 H 0.098 0.902 28 H 0.114 0.886 29 H 0.424 0.576 30 H 0.126 0.874 31 H 0.147 0.853 32 H 0.144 0.856 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.343 0.657 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.045 0.955 40 H 0.049 0.951 41 H -0.023 1.023 42 H 0.005 0.995 43 H 0.261 0.739 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.840 16.517 0.121 16.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.295 3.705 3 O -0.455 6.455 4 N -0.315 5.315 5 C 0.033 3.967 6 C -0.160 4.160 7 C -0.124 4.124 8 C -0.145 4.145 9 C -0.067 4.067 10 C -0.022 4.022 11 N -0.316 5.316 12 C -0.019 4.019 13 H 0.080 0.920 14 C -0.228 4.228 15 C -0.127 4.127 16 C 0.003 3.997 17 C -0.581 4.581 18 H 0.071 0.929 19 C -0.196 4.196 20 N -0.571 5.571 21 Si 0.783 3.217 22 H -0.199 1.199 23 H -0.207 1.207 24 H -0.190 1.190 25 C -0.154 4.154 26 H 0.130 0.870 27 H 0.116 0.884 28 H 0.132 0.868 29 H 0.263 0.737 30 H 0.144 0.856 31 H 0.165 0.835 32 H 0.162 0.838 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.162 0.838 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.067 0.933 41 H -0.005 1.005 42 H 0.024 0.976 43 H 0.069 0.931 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.376 16.958 0.227 17.015 hybrid contribution 0.029 -1.005 -0.213 1.028 sum 1.405 15.952 0.015 16.014 Atomic orbital electron populations 1.21961 0.86931 1.06688 1.06715 1.21874 0.92658 0.82252 0.73678 1.90686 1.71799 1.32729 1.50283 1.43697 1.04783 1.10860 1.72177 1.17905 0.83603 0.97133 0.98055 1.21301 0.94714 0.99268 1.00706 1.21274 0.93546 0.98968 0.98574 1.21256 1.00770 0.94134 0.98359 1.19707 0.92869 0.95733 0.98402 1.20825 0.98535 0.88873 0.93988 1.60432 1.51299 1.09243 1.10663 1.21529 0.92500 0.91066 0.96790 0.92010 1.22396 0.95747 1.02181 1.02490 1.21464 0.97240 0.95018 0.98954 1.18811 0.92747 0.94362 0.93812 1.21821 0.93535 1.08336 1.34437 0.92867 1.25897 0.96093 1.00987 0.96627 1.70109 1.00034 1.40774 1.46198 0.85563 0.77485 0.79710 0.78967 1.19929 1.20736 1.19028 1.20904 0.95195 0.98968 1.00339 0.87027 0.88351 0.86782 0.73738 0.85629 0.83512 0.83797 0.91676 0.92490 0.83808 0.91737 0.91978 0.91648 0.93578 0.93251 1.00498 0.97636 0.93056 0.86244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 10.32 71.24 0.74 -1.22 16 2 C 0.50 11.35 7.78 87.66 0.68 12.03 16 3 O -0.58 -17.68 14.52 -3.06 -0.04 -17.72 16 4 N -0.67 -15.33 5.34 -303.50 -1.62 -16.95 16 5 C 0.13 3.58 6.30 38.15 0.24 3.82 16 6 C -0.14 -3.88 8.70 22.39 0.19 -3.69 16 7 C -0.11 -2.48 10.04 22.25 0.22 -2.26 16 8 C -0.13 -2.91 9.70 22.29 0.22 -2.70 16 9 C -0.07 -1.78 5.39 -19.88 -0.11 -1.89 16 10 C 0.11 2.86 5.61 85.56 0.48 3.34 16 11 N -0.68 -21.48 5.69 -495.56 -2.82 -24.30 16 12 C 0.09 2.92 2.59 44.91 0.12 3.04 16 13 H 0.06 2.11 7.80 -2.39 -0.02 2.09 16 14 C -0.17 -4.04 9.16 71.98 0.66 -3.38 16 15 C -0.09 -3.64 4.83 30.60 0.15 -3.49 16 16 C 0.04 2.13 4.86 29.85 0.15 2.28 16 17 C -0.54 -31.62 9.11 25.60 0.23 -31.38 16 18 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 19 C 0.00 0.08 5.46 84.65 0.46 0.54 16 20 N -0.93 -57.07 13.29 21.45 0.28 -56.78 16 21 Si 0.96 44.83 29.54 68.60 2.03 46.86 16 22 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 25 C -0.13 -3.90 9.62 22.39 0.22 -3.68 16 26 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 27 H 0.10 1.14 8.12 -2.39 -0.02 1.12 16 28 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.42 7.70 8.82 -92.71 -0.82 6.88 16 30 H 0.13 3.68 6.23 -2.91 -0.02 3.67 16 31 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 32 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 33 H 0.06 1.93 8.00 -2.39 -0.02 1.91 16 34 H 0.06 1.26 7.38 -2.39 -0.02 1.25 16 35 H 0.34 9.74 8.46 -89.70 -0.76 8.99 16 36 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.06 1.40 8.13 -2.39 -0.02 1.38 16 38 H 0.06 1.31 7.45 -2.38 -0.02 1.30 16 39 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 41 H -0.02 -1.37 8.14 -2.39 -0.02 -1.39 16 42 H 0.01 0.31 7.75 -2.39 -0.02 0.29 16 43 H 0.26 14.99 8.31 -92.71 -0.77 14.21 16 44 H 0.12 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -74.04 366.38 1.89 -72.16 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: -0.58 Total: 25.39 kcal Atomic # 6 Polarization: -33.28 SS G_CDS: 4.64 Total: -28.64 kcal Atomic # 7 Polarization: -93.88 SS G_CDS: -4.16 Total: -98.04 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.04 Total: -17.72 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -74.04 1.89 -72.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172477915.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.290 kcal (2) G-P(sol) polarization free energy of solvation -74.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.34 seconds