Wall clock time and date at job start Tue Mar 31 2020 07:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46578 * 2 1 4 4 C 1.52998 * 109.47360 * 120.00491 * 2 1 3 5 5 C 1.53000 * 109.47189 * 185.00100 * 4 2 1 6 6 C 1.50694 * 109.47063 * 179.97438 * 5 4 2 7 7 H 1.08001 * 120.00201 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00104 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00173 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 119.99776 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.47383 * 89.99682 * 10 8 6 12 12 H 1.48498 * 109.47097 * 209.99778 * 10 8 6 13 13 H 1.48500 * 109.47270 * 329.99640 * 10 8 6 14 14 N 1.46904 * 109.46920 * 240.00414 * 2 1 3 15 15 C 1.46898 * 111.00216 * 84.99809 * 14 2 1 16 16 C 1.52996 * 109.47217 * 179.97438 * 15 14 2 17 17 N 1.46500 * 109.47079 * 179.97438 * 16 15 14 18 18 C 1.34779 * 120.00008 * 179.97438 * 17 16 15 19 19 O 1.21550 * 120.00001 * 0.02562 * 18 17 16 20 20 C 1.47847 * 120.00150 * 180.02562 * 18 17 16 21 21 C 1.39575 * 120.14487 * 180.02562 * 20 18 17 22 22 C 1.37955 * 119.85263 * 180.23372 * 21 20 18 23 23 C 1.38361 * 120.14143 * 359.46851 * 22 21 20 24 24 C 1.38356 * 120.29591 * 0.55458 * 23 22 21 25 25 C 1.37958 * 120.14442 * 359.70615 * 24 23 22 26 26 H 1.09003 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47307 * 299.99309 * 1 2 3 28 28 H 1.08996 * 109.47615 * 59.99860 * 1 2 3 29 29 H 1.09002 * 109.46685 * 304.99718 * 4 2 1 30 30 H 1.08999 * 109.47208 * 64.99473 * 4 2 1 31 31 H 1.08996 * 109.46998 * 299.99868 * 5 4 2 32 32 H 1.09003 * 109.46842 * 59.99531 * 5 4 2 33 33 H 0.96998 * 120.00099 * 180.02562 * 9 8 6 34 34 H 1.00904 * 110.99707 * 208.95144 * 14 2 1 35 35 H 1.09006 * 109.46873 * 59.99475 * 15 14 2 36 36 H 1.09001 * 109.46788 * 300.00162 * 15 14 2 37 37 H 1.09000 * 109.47185 * 60.00408 * 16 15 14 38 38 H 1.09002 * 109.47127 * 300.00237 * 16 15 14 39 39 H 0.96996 * 120.00359 * 0.02562 * 17 16 15 40 40 H 1.08002 * 120.07104 * 359.95155 * 21 20 18 41 41 H 1.07998 * 119.92975 * 179.72529 * 22 21 20 42 42 H 1.08004 * 119.85537 * 180.27871 * 23 22 21 43 43 H 1.08006 * 119.92842 * 179.72127 * 24 23 22 44 44 H 1.07997 * 120.07488 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6133 1.3136 6 6 4.0672 -1.3233 2.5442 7 1 3.3688 -1.8039 3.2133 8 6 5.4185 -1.3602 2.8156 9 7 5.8568 -1.9794 3.8899 10 14 6.6265 -0.5297 1.6580 11 1 6.8321 0.8781 2.0836 12 1 7.9234 -1.2521 1.6943 13 1 6.0846 -0.5546 0.2756 14 7 2.0196 -0.6924 -1.1995 15 6 2.0824 0.2227 -2.3469 16 6 2.5961 -0.5327 -3.5742 17 7 2.6581 0.3798 -4.7187 18 6 3.0853 -0.0686 -5.9157 19 8 3.4188 -1.2302 -6.0459 20 6 3.1484 0.8524 -7.0706 21 6 3.5899 0.3911 -8.3117 22 6 3.6510 1.2568 -9.3840 23 6 3.2653 2.5771 -9.2338 24 6 2.8272 3.0409 -8.0062 25 6 2.7664 2.1869 -6.9244 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.6055 -0.2618 2.1369 30 1 1.7517 -1.7716 1.2055 31 1 3.9995 -1.0728 0.4258 32 1 3.8532 0.4370 1.3572 33 1 6.8075 -2.0051 4.0809 34 1 2.9173 -1.1204 -1.0288 35 1 2.7588 1.0463 -2.1182 36 1 1.0870 0.6164 -2.5525 37 1 1.9200 -1.3565 -3.8031 38 1 3.5916 -0.9261 -3.3684 39 1 2.3924 1.3068 -4.6148 40 1 3.8873 -0.6403 -8.4312 41 1 3.9966 0.9023 -10.3438 42 1 3.3108 3.2498 -10.0776 43 1 2.5319 4.0738 -7.8945 44 1 2.4238 2.5500 -5.9668 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172479086.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:19 Heat of formation + Delta-G solvation = -25.966891 kcal Electronic energy + Delta-G solvation = -21906.653588 eV Core-core repulsion = 18630.090281 eV Total energy + Delta-G solvation = -3276.563307 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.44054 -38.62161 -37.56045 -35.28868 -33.27577 -32.19462 -31.36879 -31.20924 -29.75045 -27.47617 -25.34290 -24.07021 -22.96172 -22.08545 -21.19288 -20.67394 -19.66923 -18.42129 -16.87085 -16.61691 -16.22461 -15.99946 -15.40653 -15.09016 -15.03924 -14.63990 -14.27261 -14.07440 -13.95576 -13.62214 -13.29088 -12.93605 -12.73882 -12.50781 -12.32845 -12.08489 -11.75620 -11.71045 -11.60100 -11.51035 -11.19310 -10.95839 -10.60494 -10.17986 -9.99567 -9.80079 -9.49090 -9.47789 -9.41919 -9.21225 -9.19301 -8.56719 -8.25139 -6.06336 -4.04433 0.47192 0.93666 2.60313 2.84985 3.27481 3.35957 3.37160 3.52051 4.29137 4.37070 4.42138 4.46785 4.50573 4.71793 4.87435 4.94140 5.03953 5.08245 5.26602 5.32117 5.36687 5.42881 5.54551 5.58992 5.73589 5.82501 5.86985 5.88315 5.97784 6.01466 6.03751 6.17734 6.18335 6.34865 6.37950 6.44992 6.67515 6.80310 7.16105 7.23885 7.25171 7.43476 7.62404 7.76971 7.97273 8.51988 8.99139 9.55947 11.07190 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.017940 B = 0.002809 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.406701 B = 9966.842958 C =10836.652826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.082 3.918 3 H 0.039 0.961 4 C -0.107 4.107 5 C -0.015 4.015 6 C -0.519 4.519 7 H 0.072 0.928 8 C 0.066 3.934 9 N -0.902 5.902 10 Si 0.881 3.119 11 H -0.279 1.279 12 H -0.287 1.287 13 H -0.267 1.267 14 N -0.684 5.684 15 C 0.049 3.951 16 C 0.118 3.882 17 N -0.723 5.723 18 C 0.556 3.444 19 O -0.533 6.533 20 C -0.133 4.133 21 C -0.061 4.061 22 C -0.128 4.128 23 C -0.097 4.097 24 C -0.128 4.128 25 C -0.087 4.087 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.043 0.957 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.013 0.987 32 H 0.007 0.993 33 H 0.263 0.737 34 H 0.353 0.647 35 H 0.033 0.967 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.399 0.601 40 H 0.137 0.863 41 H 0.130 0.870 42 H 0.127 0.873 43 H 0.129 0.871 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.532 11.908 -25.442 29.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.028 4.028 3 H 0.057 0.943 4 C -0.145 4.145 5 C -0.053 4.053 6 C -0.557 4.557 7 H 0.090 0.910 8 C -0.135 4.135 9 N -0.541 5.541 10 Si 0.708 3.292 11 H -0.204 1.204 12 H -0.213 1.213 13 H -0.192 1.192 14 N -0.319 5.319 15 C -0.082 4.082 16 C -0.005 4.005 17 N -0.376 5.376 18 C 0.343 3.657 19 O -0.411 6.411 20 C -0.136 4.136 21 C -0.079 4.079 22 C -0.146 4.146 23 C -0.115 4.115 24 C -0.146 4.146 25 C -0.106 4.106 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.031 0.969 32 H 0.026 0.974 33 H 0.073 0.927 34 H 0.174 0.826 35 H 0.051 0.949 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.234 0.766 40 H 0.155 0.845 41 H 0.148 0.852 42 H 0.145 0.855 43 H 0.147 0.853 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.743 10.747 -25.551 29.066 hybrid contribution 1.445 1.494 -0.161 2.084 sum -7.299 12.241 -25.712 29.397 Atomic orbital electron populations 1.21786 0.95285 1.02061 1.00331 1.21662 0.94966 0.95972 0.90169 0.94312 1.21676 0.98063 1.00246 0.94509 1.19613 0.91956 0.96182 0.97507 1.21113 0.92923 1.34360 1.07306 0.90950 1.25047 0.98431 0.94984 0.95052 1.69912 1.14636 1.43422 1.26157 0.86775 0.80752 0.79662 0.82001 1.20446 1.21317 1.19226 1.60483 1.34784 1.32266 1.04353 1.22089 1.00601 0.94515 0.90961 1.21362 1.02402 0.92712 0.84051 1.45830 1.67473 1.14388 1.09874 1.18268 0.77287 0.87479 0.82670 1.90798 1.48157 1.17904 1.84223 1.20001 1.04769 0.94156 0.94637 1.21335 0.94926 1.00589 0.91094 1.21197 1.00667 0.93702 0.99050 1.21402 0.96704 0.95839 0.97552 1.21131 1.00600 1.00009 0.92856 1.21340 0.97600 0.92478 0.99187 0.92089 0.92739 0.93771 0.91942 0.91672 0.96857 0.97445 0.92721 0.82563 0.94853 0.90718 0.90145 0.91116 0.76634 0.84539 0.85233 0.85538 0.85316 0.85595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.41 37.16 0.35 -1.45 16 2 C 0.08 1.27 2.65 -67.71 -0.18 1.09 16 3 H 0.04 0.60 7.80 -51.93 -0.40 0.20 16 4 C -0.11 -2.05 4.74 -26.73 -0.13 -2.18 16 5 C -0.02 -0.35 3.87 -27.89 -0.11 -0.46 16 6 C -0.52 -14.72 9.66 -34.44 -0.33 -15.05 16 7 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 8 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 9 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 10 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 13 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 14 N -0.68 -10.22 6.31 -106.72 -0.67 -10.89 16 15 C 0.05 0.58 5.60 -3.83 -0.02 0.56 16 16 C 0.12 1.45 5.93 -4.04 -0.02 1.43 16 17 N -0.72 -7.61 5.51 -61.25 -0.34 -7.95 16 18 C 0.56 6.99 7.77 -12.33 -0.10 6.89 16 19 O -0.53 -8.78 16.35 5.32 0.09 -8.69 16 20 C -0.13 -1.33 5.87 -104.97 -0.62 -1.95 16 21 C -0.06 -0.57 9.60 -39.19 -0.38 -0.95 16 22 C -0.13 -0.91 10.03 -39.64 -0.40 -1.31 16 23 C -0.10 -0.59 10.04 -39.49 -0.40 -0.99 16 24 C -0.13 -0.80 10.03 -39.64 -0.40 -1.20 16 25 C -0.09 -0.65 9.54 -39.18 -0.37 -1.03 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.04 0.52 7.45 -51.93 -0.39 0.13 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.01 0.31 5.48 -51.93 -0.28 0.02 16 32 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 33 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 34 H 0.35 5.87 6.47 -39.29 -0.25 5.61 16 35 H 0.03 0.40 8.06 -51.93 -0.42 -0.02 16 36 H 0.07 0.79 7.44 -51.93 -0.39 0.40 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.40 2.99 6.51 -40.82 -0.27 2.72 16 40 H 0.14 1.33 7.65 -52.49 -0.40 0.93 16 41 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.13 0.47 8.06 -52.48 -0.42 0.05 16 43 H 0.13 0.51 8.06 -52.48 -0.42 0.09 16 44 H 0.13 0.66 6.41 -52.49 -0.34 0.32 16 LS Contribution 360.72 15.07 5.44 5.44 Total: -1.00 -33.39 360.72 -9.50 -42.89 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -6.92 Total: 4.01 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -3.19 Total: -14.78 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: -0.24 Total: -45.99 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.09 Total: -8.69 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.39 -9.50 -42.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479086.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.924 kcal (2) G-P(sol) polarization free energy of solvation -33.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds