Wall clock time and date at job start Tue Mar 31 2020 07:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46578 * 2 1 4 4 C 1.52998 * 109.47360 * 120.00491 * 2 1 3 5 5 C 1.53000 * 109.47189 * 185.00100 * 4 2 1 6 6 C 1.50694 * 109.47063 * 179.97438 * 5 4 2 7 7 H 1.08001 * 120.00201 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00104 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00173 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 119.99776 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.47383 * 89.99682 * 10 8 6 12 12 H 1.48498 * 109.47097 * 209.99778 * 10 8 6 13 13 H 1.48500 * 109.47270 * 329.99640 * 10 8 6 14 14 N 1.46904 * 109.46920 * 240.00414 * 2 1 3 15 15 C 1.46898 * 111.00216 * 84.99809 * 14 2 1 16 16 C 1.52996 * 109.47217 * 179.97438 * 15 14 2 17 17 N 1.46500 * 109.47079 * 179.97438 * 16 15 14 18 18 C 1.34779 * 120.00008 * 179.97438 * 17 16 15 19 19 O 1.21550 * 120.00001 * 0.02562 * 18 17 16 20 20 C 1.47847 * 120.00150 * 180.02562 * 18 17 16 21 21 C 1.39575 * 120.14487 * 180.02562 * 20 18 17 22 22 C 1.37955 * 119.85263 * 180.23372 * 21 20 18 23 23 C 1.38361 * 120.14143 * 359.46851 * 22 21 20 24 24 C 1.38356 * 120.29591 * 0.55458 * 23 22 21 25 25 C 1.37958 * 120.14442 * 359.70615 * 24 23 22 26 26 H 1.09003 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47307 * 299.99309 * 1 2 3 28 28 H 1.08996 * 109.47615 * 59.99860 * 1 2 3 29 29 H 1.09002 * 109.46685 * 304.99718 * 4 2 1 30 30 H 1.08999 * 109.47208 * 64.99473 * 4 2 1 31 31 H 1.08996 * 109.46998 * 299.99868 * 5 4 2 32 32 H 1.09003 * 109.46842 * 59.99531 * 5 4 2 33 33 H 0.96998 * 120.00099 * 180.02562 * 9 8 6 34 34 H 1.00904 * 110.99707 * 208.95144 * 14 2 1 35 35 H 1.09006 * 109.46873 * 59.99475 * 15 14 2 36 36 H 1.09001 * 109.46788 * 300.00162 * 15 14 2 37 37 H 1.09000 * 109.47185 * 60.00408 * 16 15 14 38 38 H 1.09002 * 109.47127 * 300.00237 * 16 15 14 39 39 H 0.96996 * 120.00359 * 0.02562 * 17 16 15 40 40 H 1.08002 * 120.07104 * 359.95155 * 21 20 18 41 41 H 1.07998 * 119.92975 * 179.72529 * 22 21 20 42 42 H 1.08004 * 119.85537 * 180.27871 * 23 22 21 43 43 H 1.08006 * 119.92842 * 179.72127 * 24 23 22 44 44 H 1.07997 * 120.07488 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6133 1.3136 6 6 4.0672 -1.3233 2.5442 7 1 3.3688 -1.8039 3.2133 8 6 5.4185 -1.3602 2.8156 9 7 5.8568 -1.9794 3.8899 10 14 6.6265 -0.5297 1.6580 11 1 6.8321 0.8781 2.0836 12 1 7.9234 -1.2521 1.6943 13 1 6.0846 -0.5546 0.2756 14 7 2.0196 -0.6924 -1.1995 15 6 2.0824 0.2227 -2.3469 16 6 2.5961 -0.5327 -3.5742 17 7 2.6581 0.3798 -4.7187 18 6 3.0853 -0.0686 -5.9157 19 8 3.4188 -1.2302 -6.0459 20 6 3.1484 0.8524 -7.0706 21 6 3.5899 0.3911 -8.3117 22 6 3.6510 1.2568 -9.3840 23 6 3.2653 2.5771 -9.2338 24 6 2.8272 3.0409 -8.0062 25 6 2.7664 2.1869 -6.9244 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.6055 -0.2618 2.1369 30 1 1.7517 -1.7716 1.2055 31 1 3.9995 -1.0728 0.4258 32 1 3.8532 0.4370 1.3572 33 1 6.8075 -2.0051 4.0809 34 1 2.9173 -1.1204 -1.0288 35 1 2.7588 1.0463 -2.1182 36 1 1.0870 0.6164 -2.5525 37 1 1.9200 -1.3565 -3.8031 38 1 3.5916 -0.9261 -3.3684 39 1 2.3924 1.3068 -4.6148 40 1 3.8873 -0.6403 -8.4312 41 1 3.9966 0.9023 -10.3438 42 1 3.3108 3.2498 -10.0776 43 1 2.5319 4.0738 -7.8945 44 1 2.4238 2.5500 -5.9668 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172479086.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:13 Heat of formation + Delta-G solvation = -48.944216 kcal Electronic energy + Delta-G solvation = -21907.649960 eV Core-core repulsion = 18630.090281 eV Total energy + Delta-G solvation = -3277.559679 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 3.22 seconds Orbital eigenvalues (eV) -41.26134 -39.35234 -38.76545 -36.42406 -35.12472 -33.50296 -32.24587 -31.88141 -31.18723 -28.47667 -27.10190 -24.85031 -23.61604 -23.06024 -22.76995 -21.58083 -21.06107 -19.20441 -18.90363 -17.46731 -17.16085 -16.85949 -16.44542 -16.35189 -16.09596 -15.81997 -15.44213 -15.13955 -14.82372 -14.67927 -14.40720 -14.34090 -14.08679 -13.60021 -13.49980 -13.24926 -13.00611 -12.87416 -12.74344 -12.61629 -12.33289 -12.07349 -12.02277 -11.74053 -11.60425 -11.36069 -11.18798 -11.08119 -10.78090 -10.33785 -9.96250 -9.89396 -9.39148 -8.31131 -6.34898 -0.16173 0.40581 1.31834 1.35067 1.45383 1.80215 1.96378 2.33049 2.89066 3.03943 3.30462 3.65262 3.82798 3.93299 3.99998 4.01615 4.12014 4.24365 4.30361 4.43909 4.45968 4.47710 4.52984 4.72385 4.80657 4.84151 4.88548 4.91070 5.00396 5.04676 5.05045 5.12443 5.25637 5.34177 5.43639 5.44499 5.50309 5.52274 5.54524 5.66000 5.94081 6.15146 6.27603 6.36030 6.42535 6.73757 7.09221 7.29386 8.85913 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.017940 B = 0.002809 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.406701 B = 9966.842958 C =10836.652826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.090 3.910 3 H 0.048 0.952 4 C -0.101 4.101 5 C -0.010 4.010 6 C -0.531 4.531 7 H 0.030 0.970 8 C 0.002 3.998 9 N -0.952 5.952 10 Si 0.952 3.048 11 H -0.266 1.266 12 H -0.287 1.287 13 H -0.247 1.247 14 N -0.694 5.694 15 C 0.056 3.944 16 C 0.125 3.875 17 N -0.709 5.709 18 C 0.551 3.449 19 O -0.585 6.585 20 C -0.157 4.157 21 C -0.083 4.083 22 C -0.132 4.132 23 C -0.091 4.091 24 C -0.128 4.128 25 C -0.086 4.086 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.020 0.980 32 H 0.015 0.985 33 H 0.266 0.734 34 H 0.341 0.659 35 H 0.043 0.957 36 H 0.097 0.903 37 H 0.067 0.933 38 H 0.050 0.950 39 H 0.416 0.584 40 H 0.119 0.881 41 H 0.149 0.851 42 H 0.157 0.843 43 H 0.159 0.841 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.188 15.480 -28.113 33.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.019 4.019 3 H 0.066 0.934 4 C -0.139 4.139 5 C -0.048 4.048 6 C -0.569 4.569 7 H 0.049 0.951 8 C -0.194 4.194 9 N -0.593 5.593 10 Si 0.775 3.225 11 H -0.191 1.191 12 H -0.213 1.213 13 H -0.171 1.171 14 N -0.327 5.327 15 C -0.073 4.073 16 C 0.001 3.999 17 N -0.361 5.361 18 C 0.340 3.660 19 O -0.467 6.467 20 C -0.160 4.160 21 C -0.102 4.102 22 C -0.150 4.150 23 C -0.109 4.109 24 C -0.145 4.145 25 C -0.105 4.105 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.038 0.962 32 H 0.034 0.966 33 H 0.074 0.926 34 H 0.161 0.839 35 H 0.061 0.939 36 H 0.115 0.885 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.254 0.746 40 H 0.137 0.863 41 H 0.166 0.834 42 H 0.175 0.825 43 H 0.177 0.823 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.446 14.369 -28.224 33.050 hybrid contribution 1.591 0.374 0.687 1.773 sum -7.855 14.743 -27.537 32.208 Atomic orbital electron populations 1.21736 0.93225 1.02067 1.01877 1.21556 0.96492 0.95536 0.88362 0.93425 1.21554 0.95469 1.00081 0.96782 1.19546 0.94607 0.95616 0.94998 1.21509 0.92599 1.34215 1.08563 0.95123 1.26046 1.00731 0.95791 0.96869 1.70073 1.15266 1.45434 1.28506 0.85640 0.77703 0.78759 0.80398 1.19073 1.21259 1.17051 1.60519 1.34071 1.33215 1.04943 1.22091 1.02060 0.93870 0.89300 1.21156 1.00919 0.92915 0.84906 1.45658 1.66659 1.14982 1.08842 1.18784 0.76285 0.87237 0.83657 1.90762 1.50646 1.20179 1.85082 1.19918 1.07317 0.95047 0.93748 1.21388 0.96207 1.00497 0.92111 1.21449 1.00396 0.94066 0.99061 1.21830 0.94870 0.95586 0.98622 1.21545 0.99515 1.01185 0.92304 1.21606 0.96783 0.91262 1.00813 0.92898 0.91874 0.91549 0.92298 0.93098 0.96201 0.96641 0.92551 0.83944 0.93886 0.88472 0.91484 0.93185 0.74598 0.86321 0.83353 0.82548 0.82320 0.83375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 9.41 71.98 0.68 -2.42 16 2 C 0.09 2.58 2.65 44.91 0.12 2.70 16 3 H 0.05 1.31 7.80 -2.39 -0.02 1.29 16 4 C -0.10 -3.82 4.74 30.59 0.15 -3.68 16 5 C -0.01 -0.47 3.87 29.85 0.12 -0.35 16 6 C -0.53 -30.84 9.66 25.60 0.25 -30.59 16 7 H 0.03 1.97 7.99 -2.91 -0.02 1.94 16 8 C 0.00 0.13 5.47 84.65 0.46 0.59 16 9 N -0.95 -60.59 13.96 21.45 0.30 -60.29 16 10 Si 0.95 44.68 27.47 68.60 1.88 46.56 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 12 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 13 H -0.25 -10.68 6.54 99.48 0.65 -10.03 16 14 N -0.69 -19.50 6.31 -491.57 -3.10 -22.60 16 15 C 0.06 1.20 5.60 86.30 0.48 1.68 16 16 C 0.13 2.97 5.93 86.38 0.51 3.49 16 17 N -0.71 -14.02 5.51 -465.97 -2.57 -16.59 16 18 C 0.55 13.96 7.77 86.79 0.67 14.64 16 19 O -0.59 -20.27 16.35 -3.87 -0.06 -20.33 16 20 C -0.16 -3.06 5.87 -20.09 -0.12 -3.18 16 21 C -0.08 -1.57 9.60 22.53 0.22 -1.36 16 22 C -0.13 -1.64 10.03 22.23 0.22 -1.42 16 23 C -0.09 -0.80 10.04 22.33 0.22 -0.58 16 24 C -0.13 -1.12 10.03 22.23 0.22 -0.89 16 25 C -0.09 -1.05 9.54 22.53 0.21 -0.84 16 26 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.07 1.29 7.45 -2.39 -0.02 1.27 16 29 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.02 0.89 5.48 -2.39 -0.01 0.88 16 32 H 0.02 0.68 7.57 -2.39 -0.02 0.66 16 33 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 34 H 0.34 10.97 6.47 -89.69 -0.58 10.39 16 35 H 0.04 0.87 8.06 -2.38 -0.02 0.85 16 36 H 0.10 1.66 7.44 -2.39 -0.02 1.65 16 37 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.42 5.11 6.51 -92.71 -0.60 4.51 16 40 H 0.12 2.55 7.65 -2.91 -0.02 2.53 16 41 H 0.15 1.17 8.06 -2.91 -0.02 1.14 16 42 H 0.16 0.44 8.06 -2.91 -0.02 0.41 16 43 H 0.16 0.44 8.06 -2.91 -0.02 0.42 16 44 H 0.15 1.00 6.41 -2.91 -0.02 0.98 16 Total: -1.00 -75.97 360.72 0.63 -75.35 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -0.25 Total: 20.11 kcal Atomic # 6 Polarization: -26.63 SS G_CDS: 4.42 Total: -22.21 kcal Atomic # 7 Polarization: -94.11 SS G_CDS: -5.37 Total: -99.48 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.06 Total: -20.33 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.88 Total: 46.56 kcal Total: -75.97 0.63 -75.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479086.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.401 kcal (2) G-P(sol) polarization free energy of solvation -75.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.22 seconds