Wall clock time and date at job start Tue Mar 31 2020 07:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.46958 * 2 1 4 4 C 1.52994 * 109.47507 * 120.00465 * 2 1 3 5 5 C 1.52994 * 109.47413 * 185.00037 * 4 2 1 6 6 C 1.50707 * 109.47114 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00004 * 359.97438 * 6 5 4 8 8 C 1.37872 * 119.99950 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00261 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00171 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47221 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47437 * 119.99915 * 10 8 6 13 13 H 1.48501 * 109.47101 * 240.00241 * 10 8 6 14 14 N 1.46902 * 109.46919 * 240.00743 * 2 1 3 15 15 C 1.46899 * 111.00613 * 84.36993 * 14 2 1 16 16 H 1.09003 * 109.70609 * 325.34840 * 15 14 2 17 17 C 1.53322 * 109.68334 * 85.88788 * 15 14 2 18 18 C 1.52711 * 108.43083 * 189.46909 * 17 15 14 19 19 C 1.50745 * 110.57905 * 308.62752 * 18 17 15 20 20 N 1.32786 * 117.48695 * 197.94579 * 19 18 17 21 21 C 1.31901 * 122.34139 * 180.66642 * 20 19 18 22 22 O 1.35675 * 119.76887 * 179.97438 * 21 20 19 23 23 C 1.38940 * 120.46379 * 359.97438 * 21 20 19 24 24 C 1.38147 * 118.78935 * 359.85018 * 23 21 20 25 25 C 1.37480 * 122.34187 * 18.29078 * 19 18 17 26 26 C 1.50519 * 122.82935 * 358.80846 * 25 19 18 27 27 H 1.09001 * 109.47441 * 64.82034 * 1 2 3 28 28 H 1.09002 * 109.47434 * 184.81889 * 1 2 3 29 29 H 1.08995 * 109.47495 * 304.82076 * 1 2 3 30 30 H 1.09004 * 109.47001 * 305.00352 * 4 2 1 31 31 H 1.09007 * 109.47008 * 64.99732 * 4 2 1 32 32 H 1.08998 * 109.47315 * 299.99667 * 5 4 2 33 33 H 1.08994 * 109.47384 * 60.00078 * 5 4 2 34 34 H 0.96992 * 120.00213 * 180.02562 * 9 8 6 35 35 H 1.00902 * 110.99920 * 320.41170 * 14 2 1 36 36 H 1.08998 * 109.64016 * 69.79064 * 17 15 14 37 37 H 1.08999 * 109.64512 * 309.15142 * 17 15 14 38 38 H 1.09001 * 109.25666 * 188.34433 * 18 17 15 39 39 H 1.09002 * 109.22690 * 68.88556 * 18 17 15 40 40 H 0.96697 * 114.00182 * 269.99603 * 22 21 20 41 41 H 1.07997 * 120.60403 * 180.12991 * 23 21 20 42 42 H 1.07992 * 120.51609 * 180.02562 * 24 23 21 43 43 H 1.09004 * 109.25130 * 138.15028 * 26 25 19 44 44 H 1.08995 * 109.25288 * 257.58535 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5648 -0.6133 1.3135 6 6 4.0671 -1.3233 2.5443 7 1 3.3686 -1.8032 3.2138 8 6 5.4184 -1.3603 2.8156 9 7 6.2690 -0.7755 2.0006 10 14 6.0411 -2.2409 4.3407 11 1 4.8911 -2.8115 5.0871 12 1 6.9629 -3.3339 3.9396 13 1 6.7644 -1.2768 5.2083 14 7 2.0196 -0.6924 -1.1996 15 6 2.0683 0.2190 -2.3506 16 1 1.2423 0.9280 -2.2932 17 6 3.4008 0.9775 -2.3528 18 6 3.3285 2.0774 -3.4097 19 6 2.8791 1.5122 -4.7329 20 7 3.1109 2.2385 -5.8201 21 6 2.7469 1.8421 -7.0243 22 8 3.0096 2.6264 -8.0997 23 6 2.0962 0.6270 -7.1993 24 6 1.8416 -0.1570 -6.0907 25 6 2.2449 0.2967 -4.8362 26 6 1.9686 -0.5832 -3.6467 27 1 -0.3634 0.4372 -0.9300 28 1 -0.3634 -1.0240 0.0863 29 1 -0.3634 0.5868 0.8436 30 1 1.6054 -0.2619 2.1369 31 1 1.7516 -1.7716 1.2054 32 1 3.9995 -1.0728 0.4258 33 1 3.8532 0.4369 1.3573 34 1 7.2197 -0.8019 2.1912 35 1 1.4557 -1.5037 -1.4043 36 1 4.2126 0.2911 -2.5933 37 1 3.5710 1.4221 -1.3723 38 1 4.3139 2.5281 -3.5274 39 1 2.6206 2.8404 -3.0858 40 1 2.3063 3.2563 -8.3084 41 1 1.7991 0.2993 -8.1844 42 1 1.3380 -1.1067 -6.1946 43 1 0.9658 -1.0015 -3.7343 44 1 2.6954 -1.3951 -3.6236 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172479658.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:30 Heat of formation + Delta-G solvation = -29.707962 kcal Electronic energy + Delta-G solvation = -22933.014126 eV Core-core repulsion = 19656.288594 eV Total energy + Delta-G solvation = -3276.725532 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 3.04 seconds Orbital eigenvalues (eV) -40.95205 -38.54522 -37.16300 -35.01954 -33.53007 -32.92101 -30.99126 -30.03926 -29.16819 -27.24916 -25.02447 -24.13340 -22.82991 -22.70508 -21.27913 -19.84195 -19.69234 -18.64548 -17.08970 -16.17281 -16.07726 -15.76324 -15.21851 -14.79628 -14.46523 -14.27713 -14.08699 -13.84205 -13.38002 -13.11969 -12.87714 -12.76330 -12.39216 -12.32627 -12.11118 -11.96229 -11.70451 -11.43322 -11.16589 -11.11856 -10.90784 -10.84577 -10.46921 -10.40724 -10.15411 -9.86268 -9.61122 -9.50155 -9.19787 -8.86713 -8.73500 -8.22043 -7.90048 -5.87003 -3.87836 0.82699 1.01978 3.25430 3.37158 3.44668 3.48398 3.56791 4.22582 4.37758 4.55504 4.63001 4.67642 4.77953 5.01872 5.03683 5.19370 5.36817 5.40383 5.45081 5.48664 5.51177 5.54261 5.57391 5.65815 5.74984 5.86367 5.87662 5.97135 6.12473 6.18606 6.27125 6.30829 6.38477 6.45723 6.61261 6.69921 6.90201 7.26469 7.32649 7.51423 7.79814 7.80894 7.87069 8.09883 8.25217 8.59630 9.21400 9.74796 11.23931 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.023174 B = 0.003181 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.946755 B = 8799.948249 C = 9454.998375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.084 3.916 3 H 0.073 0.927 4 C -0.098 4.098 5 C 0.030 3.970 6 C -0.518 4.518 7 H 0.050 0.950 8 C 0.056 3.944 9 N -0.894 5.894 10 Si 0.885 3.115 11 H -0.275 1.275 12 H -0.285 1.285 13 H -0.286 1.286 14 N -0.665 5.665 15 C 0.090 3.910 16 H 0.043 0.957 17 C -0.108 4.108 18 C -0.071 4.071 19 C 0.165 3.835 20 N -0.508 5.508 21 C 0.307 3.693 22 O -0.484 6.484 23 C -0.192 4.192 24 C -0.063 4.063 25 C -0.127 4.127 26 C -0.078 4.078 27 H 0.043 0.957 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.033 0.967 33 H 0.007 0.993 34 H 0.257 0.743 35 H 0.335 0.665 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.398 0.602 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.073 0.927 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.031 3.940 -17.673 22.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.025 4.025 3 H 0.091 0.909 4 C -0.136 4.136 5 C -0.007 4.007 6 C -0.556 4.556 7 H 0.069 0.931 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.714 3.286 11 H -0.199 1.199 12 H -0.212 1.212 13 H -0.212 1.212 14 N -0.296 5.296 15 C -0.020 4.020 16 H 0.061 0.939 17 C -0.146 4.146 18 C -0.109 4.109 19 C 0.030 3.970 20 N -0.227 5.227 21 C 0.126 3.874 22 O -0.291 6.291 23 C -0.213 4.213 24 C -0.088 4.088 25 C -0.129 4.129 26 C -0.116 4.116 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.025 0.975 34 H 0.067 0.933 35 H 0.154 0.846 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.254 0.746 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.091 0.909 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.241 4.546 -17.523 21.309 hybrid contribution -1.328 -0.862 0.302 1.611 sum -12.569 3.685 -17.221 21.636 Atomic orbital electron populations 1.22546 0.98743 1.01666 1.01041 1.21770 0.90761 0.98489 0.91525 0.90878 1.21626 1.00674 0.98306 0.93014 1.18993 0.88221 0.96461 0.97013 1.21390 0.91817 1.33957 1.08449 0.93143 1.24990 0.97175 0.95809 0.96458 1.69980 1.02085 1.44428 1.36858 0.86650 0.78811 0.79553 0.83623 1.19930 1.21160 1.21208 1.60548 1.58035 1.08450 1.02529 1.21456 0.97206 0.94127 0.89218 0.93887 1.21607 0.97725 0.96606 0.98688 1.20500 1.02654 0.98708 0.89057 1.20936 0.92837 0.89987 0.93228 1.67009 1.19950 1.37113 0.98585 1.19038 0.93274 0.89750 0.85328 1.84793 1.47986 1.53411 1.42894 1.22022 1.02289 0.96581 1.00455 1.21516 0.96821 0.99236 0.91273 1.20466 1.00437 0.96166 0.95876 1.20598 1.02340 0.97603 0.91065 0.93804 0.92762 0.92349 0.93607 0.93527 0.94825 0.97503 0.93325 0.84627 0.90555 0.89729 0.89313 0.89916 0.74551 0.84389 0.84374 0.90873 0.88904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.31 9.16 37.16 0.34 -1.97 16 2 C 0.08 1.33 2.39 -67.72 -0.16 1.17 16 3 H 0.07 1.21 7.19 -51.93 -0.37 0.84 16 4 C -0.10 -1.96 4.83 -26.74 -0.13 -2.09 16 5 C 0.03 0.77 4.86 -27.88 -0.14 0.64 16 6 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 7 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 9 N -0.89 -27.17 13.29 55.43 0.74 -26.43 16 10 Si 0.89 21.99 29.54 -169.99 -5.02 16.96 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 N -0.67 -9.80 5.52 -99.70 -0.55 -10.35 16 15 C 0.09 1.14 2.30 -67.67 -0.16 0.98 16 16 H 0.04 0.53 7.03 -51.93 -0.37 0.17 16 17 C -0.11 -1.52 5.50 -26.71 -0.15 -1.67 16 18 C -0.07 -0.90 5.91 -28.01 -0.17 -1.06 16 19 C 0.17 2.15 6.62 -82.43 -0.55 1.61 16 20 N -0.51 -7.02 10.21 -9.57 -0.10 -7.12 16 21 C 0.31 3.64 7.75 -17.26 -0.13 3.51 16 22 O -0.48 -4.89 13.56 -18.73 -0.25 -5.14 16 23 C -0.19 -1.87 10.06 -39.35 -0.40 -2.27 16 24 C -0.06 -0.60 9.74 -39.20 -0.38 -0.98 16 25 C -0.13 -1.45 5.74 -104.57 -0.60 -2.05 16 26 C -0.08 -0.84 4.96 -28.10 -0.14 -0.98 16 27 H 0.04 0.50 7.34 -51.93 -0.38 0.12 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 32 H 0.03 0.92 7.75 -51.93 -0.40 0.52 16 33 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.34 4.40 8.13 -39.29 -0.32 4.08 16 36 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 37 H 0.08 1.34 7.45 -51.93 -0.39 0.96 16 38 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.40 1.90 9.06 45.56 0.41 2.31 16 41 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 42 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.07 0.65 8.13 -51.93 -0.42 0.22 16 44 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 355.31 15.07 5.35 5.35 Total: -1.00 -33.23 355.31 -9.42 -42.65 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -6.43 Total: 2.81 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -3.16 Total: -18.74 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.09 Total: -43.90 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.25 Total: -5.14 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.23 -9.42 -42.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479658.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.944 kcal (2) G-P(sol) polarization free energy of solvation -33.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.04 seconds