Wall clock time and date at job start Tue Mar 31 2020 07:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.46958 * 2 1 4 4 C 1.52994 * 109.47507 * 120.00465 * 2 1 3 5 5 C 1.52994 * 109.47413 * 185.00037 * 4 2 1 6 6 C 1.50707 * 109.47114 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00004 * 359.97438 * 6 5 4 8 8 C 1.37872 * 119.99950 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00261 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00171 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47221 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47437 * 119.99915 * 10 8 6 13 13 H 1.48501 * 109.47101 * 240.00241 * 10 8 6 14 14 N 1.46902 * 109.46919 * 240.00743 * 2 1 3 15 15 C 1.46899 * 111.00613 * 84.36993 * 14 2 1 16 16 H 1.09003 * 109.70609 * 325.34840 * 15 14 2 17 17 C 1.53322 * 109.68334 * 85.88788 * 15 14 2 18 18 C 1.52711 * 108.43083 * 189.46909 * 17 15 14 19 19 C 1.50745 * 110.57905 * 308.62752 * 18 17 15 20 20 N 1.32786 * 117.48695 * 197.94579 * 19 18 17 21 21 C 1.31901 * 122.34139 * 180.66642 * 20 19 18 22 22 O 1.35675 * 119.76887 * 179.97438 * 21 20 19 23 23 C 1.38940 * 120.46379 * 359.97438 * 21 20 19 24 24 C 1.38147 * 118.78935 * 359.85018 * 23 21 20 25 25 C 1.37480 * 122.34187 * 18.29078 * 19 18 17 26 26 C 1.50519 * 122.82935 * 358.80846 * 25 19 18 27 27 H 1.09001 * 109.47441 * 64.82034 * 1 2 3 28 28 H 1.09002 * 109.47434 * 184.81889 * 1 2 3 29 29 H 1.08995 * 109.47495 * 304.82076 * 1 2 3 30 30 H 1.09004 * 109.47001 * 305.00352 * 4 2 1 31 31 H 1.09007 * 109.47008 * 64.99732 * 4 2 1 32 32 H 1.08998 * 109.47315 * 299.99667 * 5 4 2 33 33 H 1.08994 * 109.47384 * 60.00078 * 5 4 2 34 34 H 0.96992 * 120.00213 * 180.02562 * 9 8 6 35 35 H 1.00902 * 110.99920 * 320.41170 * 14 2 1 36 36 H 1.08998 * 109.64016 * 69.79064 * 17 15 14 37 37 H 1.08999 * 109.64512 * 309.15142 * 17 15 14 38 38 H 1.09001 * 109.25666 * 188.34433 * 18 17 15 39 39 H 1.09002 * 109.22690 * 68.88556 * 18 17 15 40 40 H 0.96697 * 114.00182 * 269.99603 * 22 21 20 41 41 H 1.07997 * 120.60403 * 180.12991 * 23 21 20 42 42 H 1.07992 * 120.51609 * 180.02562 * 24 23 21 43 43 H 1.09004 * 109.25130 * 138.15028 * 26 25 19 44 44 H 1.08995 * 109.25288 * 257.58535 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5648 -0.6133 1.3135 6 6 4.0671 -1.3233 2.5443 7 1 3.3686 -1.8032 3.2138 8 6 5.4184 -1.3603 2.8156 9 7 6.2690 -0.7755 2.0006 10 14 6.0411 -2.2409 4.3407 11 1 4.8911 -2.8115 5.0871 12 1 6.9629 -3.3339 3.9396 13 1 6.7644 -1.2768 5.2083 14 7 2.0196 -0.6924 -1.1996 15 6 2.0683 0.2190 -2.3506 16 1 1.2423 0.9280 -2.2932 17 6 3.4008 0.9775 -2.3528 18 6 3.3285 2.0774 -3.4097 19 6 2.8791 1.5122 -4.7329 20 7 3.1109 2.2385 -5.8201 21 6 2.7469 1.8421 -7.0243 22 8 3.0096 2.6264 -8.0997 23 6 2.0962 0.6270 -7.1993 24 6 1.8416 -0.1570 -6.0907 25 6 2.2449 0.2967 -4.8362 26 6 1.9686 -0.5832 -3.6467 27 1 -0.3634 0.4372 -0.9300 28 1 -0.3634 -1.0240 0.0863 29 1 -0.3634 0.5868 0.8436 30 1 1.6054 -0.2619 2.1369 31 1 1.7516 -1.7716 1.2054 32 1 3.9995 -1.0728 0.4258 33 1 3.8532 0.4369 1.3573 34 1 7.2197 -0.8019 2.1912 35 1 1.4557 -1.5037 -1.4043 36 1 4.2126 0.2911 -2.5933 37 1 3.5710 1.4221 -1.3723 38 1 4.3139 2.5281 -3.5274 39 1 2.6206 2.8404 -3.0858 40 1 2.3063 3.2563 -8.3084 41 1 1.7991 0.2993 -8.1844 42 1 1.3380 -1.1067 -6.1946 43 1 0.9658 -1.0015 -3.7343 44 1 2.6954 -1.3951 -3.6236 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172479658.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:29 Heat of formation + Delta-G solvation = -54.285688 kcal Electronic energy + Delta-G solvation = -22934.079896 eV Core-core repulsion = 19656.288594 eV Total energy + Delta-G solvation = -3277.791303 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.81515 -39.54814 -38.16085 -36.25731 -34.93324 -34.35729 -32.47851 -30.94859 -30.66783 -28.25329 -26.93273 -25.06866 -23.84513 -23.63110 -22.97312 -21.21204 -20.80572 -19.46366 -18.33091 -17.97816 -17.03859 -16.75976 -16.51909 -16.12335 -15.82725 -15.41322 -15.19939 -14.78230 -14.55012 -14.27125 -14.20840 -13.97796 -13.72056 -13.62771 -13.18408 -13.10652 -12.94678 -12.85495 -12.74115 -12.49921 -12.29226 -12.21909 -11.96997 -11.70263 -11.60043 -11.37011 -11.16675 -10.89560 -10.68886 -10.45549 -10.37483 -9.58354 -9.07747 -8.10801 -6.20606 0.00220 0.22485 1.40989 1.41112 1.54064 2.45481 2.49344 2.72118 3.18888 3.21797 3.50334 3.79580 3.79824 3.89756 4.05359 4.13104 4.26066 4.32871 4.37403 4.46126 4.50220 4.56602 4.58279 4.67660 4.83347 4.83887 4.93298 4.96637 5.05684 5.06824 5.11603 5.15656 5.23533 5.34089 5.35699 5.38719 5.54055 5.61107 5.63880 5.95200 6.08856 6.34886 6.39103 6.64387 6.75227 6.96112 7.00306 7.47307 9.00232 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.023174 B = 0.003181 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.946755 B = 8799.948249 C = 9454.998375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.092 3.908 3 H 0.058 0.942 4 C -0.088 4.088 5 C 0.041 3.959 6 C -0.540 4.540 7 H 0.054 0.946 8 C -0.002 4.002 9 N -0.931 5.931 10 Si 0.958 3.042 11 H -0.263 1.263 12 H -0.280 1.280 13 H -0.280 1.280 14 N -0.684 5.684 15 C 0.097 3.903 16 H 0.054 0.946 17 C -0.103 4.103 18 C -0.063 4.063 19 C 0.142 3.858 20 N -0.542 5.542 21 C 0.294 3.706 22 O -0.494 6.494 23 C -0.184 4.184 24 C -0.055 4.055 25 C -0.135 4.135 26 C -0.069 4.069 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.007 0.993 33 H -0.025 1.025 34 H 0.259 0.741 35 H 0.347 0.653 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.418 0.582 41 H 0.169 0.831 42 H 0.174 0.826 43 H 0.104 0.896 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.290 2.524 -18.563 24.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 H 0.076 0.924 4 C -0.126 4.126 5 C 0.003 3.997 6 C -0.578 4.578 7 H 0.072 0.928 8 C -0.199 4.199 9 N -0.572 5.572 10 Si 0.783 3.217 11 H -0.187 1.187 12 H -0.206 1.206 13 H -0.206 1.206 14 N -0.316 5.316 15 C -0.012 4.012 16 H 0.072 0.928 17 C -0.142 4.142 18 C -0.101 4.101 19 C 0.008 3.992 20 N -0.262 5.262 21 C 0.113 3.887 22 O -0.304 6.304 23 C -0.205 4.205 24 C -0.081 4.081 25 C -0.137 4.137 26 C -0.106 4.106 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.025 0.975 33 H -0.007 1.007 34 H 0.068 0.932 35 H 0.167 0.833 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.278 0.722 41 H 0.186 0.814 42 H 0.191 0.809 43 H 0.122 0.878 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.532 3.136 -18.420 23.070 hybrid contribution -0.576 -0.374 0.506 0.853 sum -14.108 2.762 -17.914 22.969 Atomic orbital electron populations 1.22391 0.95452 1.02641 1.02276 1.21510 0.93182 0.96940 0.90174 0.92380 1.21452 0.96496 0.99125 0.95542 1.18808 0.92205 0.93694 0.94955 1.21863 0.92376 1.34140 1.09428 0.92768 1.25926 0.97512 0.96597 0.99861 1.70127 1.02448 1.45745 1.38912 0.85507 0.78401 0.78307 0.79458 1.18660 1.20559 1.20636 1.60375 1.58869 1.09409 1.02948 1.21381 0.96094 0.94126 0.89642 0.92838 1.21485 0.98332 0.96736 0.97620 1.20338 1.02297 0.98199 0.89263 1.20886 0.94330 0.91175 0.92806 1.66910 1.21327 1.38353 0.99584 1.19372 0.93491 0.90866 0.84994 1.84744 1.49475 1.54062 1.42158 1.22335 1.00886 0.95322 1.01953 1.21896 0.95832 1.00213 0.90129 1.20560 1.00495 0.95582 0.97071 1.20524 1.03881 0.96799 0.89435 0.91804 0.91721 0.92048 0.93560 0.93255 0.97485 1.00684 0.93176 0.83261 0.92962 0.92593 0.90617 0.89146 0.72153 0.81381 0.80903 0.87785 0.89616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.88 9.16 71.98 0.66 -3.23 16 2 C 0.09 2.88 2.39 44.91 0.11 2.98 16 3 H 0.06 1.99 7.19 -2.39 -0.02 1.97 16 4 C -0.09 -3.56 4.83 30.59 0.15 -3.41 16 5 C 0.04 2.17 4.86 29.85 0.15 2.31 16 6 C -0.54 -31.49 9.11 25.60 0.23 -31.25 16 7 H 0.05 3.05 7.74 -2.91 -0.02 3.02 16 8 C 0.00 -0.11 5.46 84.65 0.46 0.36 16 9 N -0.93 -58.34 13.29 21.45 0.28 -58.06 16 10 Si 0.96 45.49 29.54 68.60 2.03 47.51 16 11 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 13 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 14 N -0.68 -19.97 5.52 -469.35 -2.59 -22.55 16 15 C 0.10 2.43 2.30 44.94 0.10 2.53 16 16 H 0.05 1.25 7.03 -2.39 -0.02 1.23 16 17 C -0.10 -3.12 5.50 30.61 0.17 -2.95 16 18 C -0.06 -1.69 5.91 29.77 0.18 -1.51 16 19 C 0.14 3.72 6.62 42.25 0.28 4.00 16 20 N -0.54 -14.99 10.21 -297.25 -3.03 -18.03 16 21 C 0.29 6.59 7.75 84.85 0.66 7.25 16 22 O -0.49 -9.36 13.56 -89.92 -1.22 -10.57 16 23 C -0.18 -3.04 10.06 22.42 0.23 -2.82 16 24 C -0.06 -0.88 9.74 22.52 0.22 -0.66 16 25 C -0.13 -2.86 5.74 -19.83 -0.11 -2.97 16 26 C -0.07 -1.34 4.96 29.71 0.15 -1.20 16 27 H 0.06 1.24 7.34 -2.39 -0.02 1.23 16 28 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 32 H 0.01 0.39 7.75 -2.39 -0.02 0.37 16 33 H -0.03 -1.49 8.14 -2.39 -0.02 -1.51 16 34 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 35 H 0.35 8.53 8.13 -89.69 -0.73 7.80 16 36 H 0.05 1.79 8.10 -2.39 -0.02 1.77 16 37 H 0.06 1.97 7.45 -2.39 -0.02 1.95 16 38 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.42 3.41 9.06 -74.06 -0.67 2.74 16 41 H 0.17 1.71 8.06 -2.91 -0.02 1.68 16 42 H 0.17 1.52 8.06 -2.91 -0.02 1.49 16 43 H 0.10 1.42 8.13 -2.38 -0.02 1.41 16 44 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -74.35 355.31 -1.32 -75.67 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -0.40 Total: 16.60 kcal Atomic # 6 Polarization: -34.18 SS G_CDS: 3.62 Total: -30.56 kcal Atomic # 7 Polarization: -93.30 SS G_CDS: -5.34 Total: -98.64 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -1.22 Total: -10.57 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Total: -74.35 -1.32 -75.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479658.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.380 kcal (2) G-P(sol) polarization free energy of solvation -74.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds